Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000801.1

Orthogroup ID

OG0008359

Physical Location & Seq

Genomic Coordinates Forward (+)

12657 .. 15303

Gene Structure 2647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000801.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgaagaagttatggctggaagaaggtgaagaggtcgaagaggatgacggaatcggggagagagaagagacagagctcggatttgttgtgtttgcggaagtaatcaactcattcatcaagatgcagaacgaagagggtcaaatcactgagctctacattcccaggaaatgctcagcaactaacaggctgatcacctcgaaggatcatgcatctgttcagatcaacatcgggcatcttgatgagaatggcatctatactggccagttctccacttttgctctttgtggttacgtccgtgctcagggagacgctgacagtggtcttgaccgactctggcagaagaagaaagcagaagtgaaacaacagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030490 GO:0031123 GO:0031125 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S21e

Protein Analysis

122

Amino Acids

13.84

Weight (kDa)

4.7

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53890 AT3G53890 AT5G27700
fragaria_vesca	FvH4_4g17990 FvH4_4g17990 FvH4_4g17990 FvH4_4g17990 FvH4_6g28030 FvH4_6g28030
malus_domestica	MD11G1125000.v1.1 MD13G1168900.v1.1 MD16G1170000.v1.1
prunus_persica	Prupe.1G137200_v2.0.a1 Prupe.6G093700_v2.0.a1
pyrus_communis	pycom13g14450 pycom16g14260
rosa_chinensis	RchiOBHm_Chr4g0422191
rosa_multiflora	Rmu_sc0000801.1_g000004 Rmu_sc0003930.1_g000011
rosa_roxburghii	Rroxscaffold_5G00364310
rosa_rugosa	Rorug04G0178400
rosa_samantha	Rh4CG252500
rosa_wichuraiana	Rw4G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	95
AclWI	GGATC	1 cut(s)	210
AcoI	YGGCCR	1 cut(s)	259
AfiI	CCNNNNNNNGG	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	2 cut(s)	76, 151
AluI	AGCT	2 cut(s)	76, 151
Alw21I	GWGCWC	3 cut(s)	78, 153, 301
Alw26I	GTCTC	2 cut(s)	62, 300
AlwI	GGATC	1 cut(s)	210
AoxI	GGCC	1 cut(s)	259
AsuHPI	GGTGA	2 cut(s)	38, 184
BalI	TGGCCA	1 cut(s)	261
BanII	GRGCYC	2 cut(s)	78, 153
Bbv12I	GWGCWC	3 cut(s)	78, 153, 301
BciT130I	CCWGG	1 cut(s)	163
BclI	TGATCA	1 cut(s)	189
BcoDI	GTCTC	2 cut(s)	62, 300
BlpI	GCTNAGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	4 cut(s)	111, 218, 241, 258
BoxI	GACNNNNGTC	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	300
Bpu1102I	GCTNAGC	1 cut(s)	172
BsaBI	GATNNNNATC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	262, 262
Bse8I	GATNNNNATC	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	1 cut(s)	49
BseJI	GATNNNNATC	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	3 cut(s)	138, 186, 314
BseNI	ACTGG	2 cut(s)	262, 262
BshFI	GGCC	1 cut(s)	261
BsiHKAI	GWGCWC	3 cut(s)	78, 153, 301
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	2 cut(s)	62, 300
BsmBI	CGTCTC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	261
Bsp1286I	GDGCHC	3 cut(s)	78, 153, 301
Bsp143I	GATC	3 cut(s)	189, 202, 219
Bsp1720I	GCTNAGC	1 cut(s)	172
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	3 cut(s)	139, 185, 313
BspPI	GGATC	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	262, 262
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	3 cut(s)	189, 202, 219
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	2 cut(s)	317, 366
Bst6I	CTCTTC	4 cut(s)	24, 33, 60, 126
BstDEI	CTNAG	3 cut(s)	147, 172, 300
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	3 cut(s)	192, 205, 222
BstMAI	GTCTC	2 cut(s)	62, 300
BstMBI	GATC	3 cut(s)	189, 202, 219
BstNI	CCWGG	1 cut(s)	163
BstPAI	GACNNNNGTC	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	49
BtsIMutI	CAGTG	2 cut(s)	144, 322
CseI	GACGC	1 cut(s)	317
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	5 cut(s)	16, 76, 151, 187, 261
CviKI_1	RGCY	5 cut(s)	16, 76, 151, 187, 261
DdeI	CTNAG	3 cut(s)	147, 172, 300
DpnI	GATC	3 cut(s)	191, 204, 221
DpnII	GATC	3 cut(s)	189, 202, 219
EaeI	YGGCCR	1 cut(s)	259
Eam1104I	CTCTTC	4 cut(s)	24, 33, 60, 126
EarI	CTCTTC	4 cut(s)	24, 33, 60, 126
Ecl136II	GAGCTC	2 cut(s)	76, 151
Eco24I	GRGCYC	2 cut(s)	78, 153
Eco53kI	GAGCTC	2 cut(s)	76, 151
EcoICRI	GAGCTC	2 cut(s)	76, 151
EcoRII	CCWGG	1 cut(s)	161
EcoT22I	ATGCAT	1 cut(s)	211
EcoT38I	GRGCYC	2 cut(s)	78, 153
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	1 cut(s)	209
FaiI	YATR	3 cut(s)	13, 207, 255
FatI	CATG	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	189
FokI	GGATG	1 cut(s)	56
FriOI	GRGCYC	2 cut(s)	78, 153
HaeIII	GGCC	1 cut(s)	261
HgaI	GACGC	1 cut(s)	317
Hin1II	CATG	1 cut(s)	209
HinfI	GANTC	2 cut(s)	51, 330
HphI	GGTGA	2 cut(s)	38, 184
Hpy188I	TCNGA	2 cut(s)	80, 219
Hpy188III	TCNNGA	3 cut(s)	118, 236, 323
HpyAV	CCTTC	2 cut(s)	17, 193
HpyCH4III	ACNGT	2 cut(s)	317, 366
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	2 cut(s)	124, 209
HpyF3I	CTNAG	3 cut(s)	147, 172, 300
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	209
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	3 cut(s)	189, 202, 219
LpnPI	CCDG	8 cut(s)	2, 148, 169, 175, 243, 275, 287, 319
LweI	GCATC	4 cut(s)	111, 218, 241, 258
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	3 cut(s)	191, 204, 221
MboI	GATC	3 cut(s)	189, 202, 219
MboII	GAAGA	8 cut(s)	16, 32, 41, 50, 77, 143, 352, 355
MhlI	GDGCHC	3 cut(s)	78, 153, 301
MlsI	TGGCCA	1 cut(s)	261
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	1 cut(s)	324
MnlI	CCTC	4 cut(s)	25, 34, 127, 205
Mox20I	TGGCCA	1 cut(s)	261
Mph1103I	ATGCAT	1 cut(s)	211
MscI	TGGCCA	1 cut(s)	261
MslI	CAYNNNNRTG	2 cut(s)	119, 237
Msp20I	TGGCCA	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
NdeII	GATC	3 cut(s)	189, 202, 219
NlaIII	CATG	1 cut(s)	209
NsiI	ATGCAT	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	51
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
PshAI	GACNNNNGTC	1 cut(s)	318
Psp124BI	GAGCTC	2 cut(s)	78, 153
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
RseI	CAYNNNNRTG	2 cut(s)	119, 237
SacI	GAGCTC	2 cut(s)	78, 153
Sau3AI	GATC	3 cut(s)	189, 202, 219
SchI	GAGTC	1 cut(s)	324
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	3 cut(s)	78, 153, 301
SetI	ASST	6 cut(s)	28, 36, 78, 153, 197, 294
SfaNI	GCATC	4 cut(s)	111, 218, 241, 258
SmiMI	CAYNNNNRTG	2 cut(s)	119, 237
SsiI	CCGC	1 cut(s)	95
SstI	GAGCTC	2 cut(s)	78, 153
StyD4I	CCNGG	1 cut(s)	161
TaaI	ACNGT	2 cut(s)	317, 366
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	36, 197
TaqII	GACCGA	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	51
TscAI	CASTG	2 cut(s)	151, 322
TspDTI	ATGAA	2 cut(s)	17, 103
TspGWI	ACGGA	2 cut(s)	63, 284
TspRI	CASTG	2 cut(s)	151, 322
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.