Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0008359

Physical Location & Seq

Genomic Coordinates Forward (+)

11511519 .. 11512588

Gene Structure 1070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1125000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTCTCCGACAGTCGATTCGTCGACCAAGATGCAGAACGAAGAGGGCGTTATCACTGAGCTTTACATTCCTAGGAAATGCTCGGCGACCAACAGGTTGATTACATCAAAGGACCACGCCTCCGTTCAGATTAACGTTGGTCATCTGGACGAACATGGCATCTACACTGGCCGGTTCTCCACTGTCGCTCTATGTGGTTACGTCCGCGCTCAGGGAGATGCTGACGGCGGTCTAGACCGACTATGGGAGAAGAAGAAAATTAAAGCCAAACAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030490 GO:0031123 GO:0031125 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S21e

Protein Analysis

93

Amino Acids

10.18

Weight (kDa)

8.62

Isoelectric Point (pI)

23.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S21e	PF01249	11 - 87	7e-36	Ribosomal protein S21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53890 AT3G53890 AT5G27700
fragaria_vesca	FvH4_4g17990 FvH4_4g17990 FvH4_4g17990 FvH4_4g17990 FvH4_6g28030 FvH4_6g28030
malus_domestica	MD11G1125000.v1.1 MD13G1168900.v1.1 MD16G1170000.v1.1
prunus_persica	Prupe.1G137200_v2.0.a1 Prupe.6G093700_v2.0.a1
pyrus_communis	pycom13g14450 pycom16g14260
rosa_chinensis	RchiOBHm_Chr4g0422191
rosa_multiflora	Rmu_sc0000801.1_g000004 Rmu_sc0003930.1_g000011
rosa_roxburghii	Rroxscaffold_5G00364310
rosa_rugosa	Rorug04G0178400
rosa_samantha	Rh4CG252500
rosa_wichuraiana	Rw4G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	23
AccII	CGCG	1 cut(s)	207
AciI	CCGC	2 cut(s)	205, 228
AclI	AACGTT	1 cut(s)	135
AcoI	YGGCCR	1 cut(s)	169
AfiI	CCNNNNNNNGG	2 cut(s)	211, 244
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	9
AoxI	GGCC	1 cut(s)	169
ArsI	GACNNNNNNTTYG	1 cut(s)	33
AspA2I	CCTAGG	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	112
AvrII	CCTAGG	1 cut(s)	71
BceAI	ACGGC	1 cut(s)	241
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	3 cut(s)	72, 233, 277
BlnI	CCTAGG	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	112
BmsI	GCATC	3 cut(s)	21, 168, 208
BoxI	GACNNNNGTC	1 cut(s)	228
Bpu10I	CCTNAGC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 244
Bse118I	RCCGGY	1 cut(s)	171
Bse1I	ACTGG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	71
BseLI	CCNNNNNNNGG	2 cut(s)	211, 244
BseMII	CTCAG	2 cut(s)	48, 224
BseNI	ACTGG	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	172
BslI	CCNNNNNNNGG	2 cut(s)	211, 244
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	171
BspACI	CCGC	2 cut(s)	205, 228
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	2 cut(s)	49, 223
BspFNI	CGCG	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	172
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	13, 184
Bst6I	CTCTTC	1 cut(s)	36
BstDEI	CTNAG	2 cut(s)	57, 210
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	209
BstMAI	GTCTC	1 cut(s)	9
BstPAI	GACNNNNGTC	1 cut(s)	228
BstUI	CGCG	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	171
BtsIMutI	CAGTG	3 cut(s)	54, 165, 180
CfoI	GCGC	1 cut(s)	209
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	112
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	3 cut(s)	61, 171, 266
CviKI_1	RGCY	3 cut(s)	61, 171, 266
DdeI	CTNAG	2 cut(s)	57, 210
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	1 cut(s)	158
FaiI	YATR	3 cut(s)	156, 193, 244
FatI	CATG	1 cut(s)	154
FblI	GTMKAC	1 cut(s)	23
FspBI	CTAG	3 cut(s)	72, 233, 277
GlaI	GCGC	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	1 cut(s)	172
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	2 cut(s)	9, 129
Hpy188III	TCNNGA	2 cut(s)	146, 233
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	1 cut(s)	25
HpyCH4III	ACNGT	2 cut(s)	13, 184
HpyCH4IV	ACGT	2 cut(s)	135, 201
HpyCH4V	TGCA	1 cut(s)	34
HpyF3I	CTNAG	2 cut(s)	57, 210
HpySE526I	ACGT	2 cut(s)	135, 201
Hsp92II	CATG	1 cut(s)	158
HspAI	GCGC	1 cut(s)	207
LpnPI	CCDG	5 cut(s)	79, 131, 153, 185, 197
LweI	GCATC	3 cut(s)	21, 168, 208
MaeI	CTAG	3 cut(s)	72, 233, 277
MaeII	ACGT	2 cut(s)	135, 201
MaeIII	GTNAC	1 cut(s)	197
MboII	GAAGA	3 cut(s)	53, 262, 265
MluCI	AATT	1 cut(s)	258
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	2 cut(s)	37, 130
MseI	TTAA	2 cut(s)	132, 261
MspI	CCGG	1 cut(s)	172
MvnI	CGCG	1 cut(s)	207
NlaIII	CATG	1 cut(s)	158
NmeAIII	GCCGAG	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	17
PshAI	GACNNNNGTC	1 cut(s)	228
Psp1406I	AACGTT	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	112
SalI	GTCGAC	1 cut(s)	22
SaqAI	TTAA	2 cut(s)	132, 261
Sau96I	GGNCC	1 cut(s)	112
SetI	ASST	4 cut(s)	63, 98, 138, 204
SfaNI	GCATC	3 cut(s)	21, 168, 208
SinI	GGWCC	1 cut(s)	112
Sse9I	AATT	1 cut(s)	258
SsiI	CCGC	2 cut(s)	205, 228
SspMI	CTAG	3 cut(s)	72, 233, 277
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	2 cut(s)	13, 184
TaiI	ACGT	2 cut(s)	138, 204
TaqI	TCGA	2 cut(s)	15, 23
TaqII	GACCGA	1 cut(s)	252
TasI	AATT	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	132, 261
Tru9I	TTAA	2 cut(s)	132, 261
TscAI	CASTG	3 cut(s)	61, 172, 187
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	3 cut(s)	61, 172, 187
VpaK11BI	GGWCC	1 cut(s)	112
XbaI	TCTAGA	1 cut(s)	232
XmaJI	CCTAGG	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	23
XspI	CTAG	3 cut(s)	72, 233, 277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.