Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008359

Physical Location & Seq

Genomic Coordinates Forward (+)

6461555 .. 6463099

Gene Structure 1545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G093700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCAGAACGAAGAGGGAGTTATCACTGAGCTTTACATTCCCAGGAAATGCTCGGCCACCAACAGGTTGATAACTTCAAAGGACCACGCGTCCGTTCAGATCAACGTCGGGCATCTGGATGAGAATGGCATCTACACAGGCCAGTTCTCCACTTTTGCTCTCTGTGGTTACGTCCGCGCTCAGGGAGATGCCGACAGTGGTCTGGACCGACTCTGGCAGAAGAAGAAAGATGAAGTTAAACAACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030490 GO:0031123 GO:0031125 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S21e

Protein Analysis

83

Amino Acids

9.23

Weight (kDa)

6.25

Isoelectric Point (pI)

11.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53890 AT3G53890 AT5G27700
fragaria_vesca	FvH4_4g17990 FvH4_4g17990 FvH4_4g17990 FvH4_4g17990 FvH4_6g28030 FvH4_6g28030
malus_domestica	MD11G1125000.v1.1 MD13G1168900.v1.1 MD16G1170000.v1.1
prunus_persica	Prupe.1G137200_v2.0.a1 Prupe.6G093700_v2.0.a1
pyrus_communis	pycom13g14450 pycom16g14260
rosa_chinensis	RchiOBHm_Chr4g0422191
rosa_multiflora	Rmu_sc0000801.1_g000004 Rmu_sc0003930.1_g000011
rosa_roxburghii	Rroxscaffold_5G00364310
rosa_rugosa	Rorug04G0178400
rosa_samantha	Rh4CG252500
rosa_wichuraiana	Rw4G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	89, 177
AciI	CCGC	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	54
AfiI	CCNNNNNNNGG	2 cut(s)	63, 181
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	78
AhdI	GACNNNNNGTC	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
AoxI	GGCC	2 cut(s)	54, 139
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	82, 205
AvaII	GGWCC	2 cut(s)	82, 205
BciT130I	CCWGG	1 cut(s)	43
BfaI	CTAG	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	43
Bme18I	GGWCC	2 cut(s)	82, 205
BmeRI	GACNNNNNGTC	1 cut(s)	88
BmgT120I	GGNCC	2 cut(s)	82, 205
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	3 cut(s)	121, 138, 178
BoxI	GACNNNNGTC	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 181
Bse1I	ACTGG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	41
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	2 cut(s)	63, 181
BseMII	CTCAG	2 cut(s)	18, 194
BseNI	ACTGG	1 cut(s)	142
Bsh1236I	CGCG	2 cut(s)	89, 177
BshFI	GGCC	2 cut(s)	56, 141
BslI	CCNNNNNNNGG	2 cut(s)	63, 181
BsnI	GGCC	2 cut(s)	56, 141
Bsp143I	GATC	1 cut(s)	99
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	2 cut(s)	56, 141
BspCNI	CTCAG	2 cut(s)	19, 193
BspFNI	CGCG	2 cut(s)	89, 177
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	27, 180
BstF5I	GGATG	1 cut(s)	124
BstFNI	CGCG	2 cut(s)	89, 177
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	1 cut(s)	102
BstMBI	GATC	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	43
BstPAI	GACNNNNGTC	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	41
BstUI	CGCG	2 cut(s)	89, 177
BsuRI	GGCC	2 cut(s)	56, 141
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	2 cut(s)	24, 202
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	82, 205
CseI	GACGC	1 cut(s)	78
CviJI	RGCY	3 cut(s)	31, 56, 141
CviKI_1	RGCY	3 cut(s)	31, 56, 141
DdeI	CTNAG	2 cut(s)	27, 180
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
DriI	GACNNNNNGTC	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	6
Eam1105I	GACNNNNNGTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	6
Eco47I	GGWCC	2 cut(s)	82, 205
EcoRII	CCWGG	1 cut(s)	41
FokI	GGATG	1 cut(s)	131
FspBI	CTAG	1 cut(s)	247
GlaI	GCGC	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	56, 141
HgaI	GACGC	1 cut(s)	78
HhaI	GCGC	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HinfI	GANTC	1 cut(s)	210
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	2 cut(s)	116, 203
Hpy99I	CGWCG	1 cut(s)	110
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	2 cut(s)	105, 171
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	27, 180
HpySE526I	ACGT	2 cut(s)	105, 171
HspAI	GCGC	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	99
LpnPI	CCDG	9 cut(s)	28, 49, 55, 101, 123, 155, 167, 188, 199
LweI	GCATC	3 cut(s)	121, 138, 178
MaeI	CTAG	1 cut(s)	247
MaeII	ACGT	2 cut(s)	105, 171
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	1 cut(s)	101
MboI	GATC	1 cut(s)	99
MboII	GAAGA	3 cut(s)	23, 232, 235
MluI	ACGCGT	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	204
MnlI	CCTC	1 cut(s)	7
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	43
MvnI	CGCG	2 cut(s)	89, 177
NdeII	GATC	1 cut(s)	99
NmeAIII	GCCGAG	1 cut(s)	32
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
PshAI	GACNNNNGTC	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspPI	GGNCC	2 cut(s)	82, 205
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	99
Sau96I	GGNCC	2 cut(s)	82, 205
SchI	GAGTC	1 cut(s)	204
ScrFI	CCNGG	1 cut(s)	43
SetI	ASST	4 cut(s)	33, 68, 108, 174
SfaNI	GCATC	3 cut(s)	121, 138, 178
SinI	GGWCC	2 cut(s)	82, 205
SmiMI	CAYNNNNRTG	1 cut(s)	117
SsiI	CCGC	1 cut(s)	175
SspMI	CTAG	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	2 cut(s)	108, 174
TaqII	GACCGA	1 cut(s)	222
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	2 cut(s)	31, 202
TspDTI	ATGAA	1 cut(s)	246
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	2 cut(s)	31, 202
VpaK11BI	GGWCC	2 cut(s)	82, 205
XspI	CTAG	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.