RchiOBHm_Chr4g0422191

Belongs to the eukaryotic ribosomal protein eS21 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0008359
Physical Location & Seq
Reverse (-)
47893497 .. 47896591
3095 bp
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UTR
Exon/CDS
Intron
PRQ39179

Sequence Viewer

Length: 249 bp
ATGCAGAACGAAGAGGGTCAAATCACTGAGCTCTACATTCCCAGGAAATGCTCAGCAACTAACAGGCTGATCACCTCGAAGGATCATGCATCTGTTCAGATCAACATCGGGCATCTTGATGAGAATGGCATCTATACTGGCCAGTTCTCCACTTTTGCTCTTTGTGGTTACGTCCGTGCTCAGGGAGACGCTGACAGTGGTCTTGACCGACTCTGGCAGAAGAAGAAAGCAGAAGTGAAACAACAGTAG

Protein Analysis

82

Amino Acids

9.22

Weight (kDa)

6.71

Isoelectric Point (pI)

20.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S21e PF01249 1 - 76 5.5e-38 Ribosomal protein S21e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 139
AfiI CCNNNNNNNGG 1 cut(s) 181
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw21I GWGCWC 2 cut(s) 33, 181
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 1 cut(s) 90
AoxI GGCC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 64
BalI TGGCCA 1 cut(s) 141
BanII GRGCYC 1 cut(s) 33
Bbv12I GWGCWC 2 cut(s) 33, 181
BciT130I CCWGG 1 cut(s) 43
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 180
BlpI GCTNAGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 3 cut(s) 98, 121, 138
BoxI GACNNNNGTC 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 180
Bpu1102I GCTNAGC 1 cut(s) 52
BsaBI GATNNNNATC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 41
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 2 cut(s) 142, 142
Bse8I GATNNNNATC 1 cut(s) 104
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 41
BseJI GATNNNNATC 1 cut(s) 104
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMII CTCAG 3 cut(s) 18, 66, 194
BseNI ACTGG 2 cut(s) 142, 142
BshFI GGCC 1 cut(s) 141
BsiHKAI GWGCWC 2 cut(s) 33, 181
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 180
BsmBI CGTCTC 1 cut(s) 180
BsnI GGCC 1 cut(s) 141
Bsp1286I GDGCHC 2 cut(s) 33, 181
Bsp143I GATC 3 cut(s) 69, 82, 99
Bsp1720I GCTNAGC 1 cut(s) 52
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 3 cut(s) 19, 65, 193
BspPI GGATC 1 cut(s) 90
BsrI ACTGG 2 cut(s) 142, 142
BssECI CCNNGG 1 cut(s) 41
BssMI GATC 3 cut(s) 69, 82, 99
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 2 cut(s) 197, 246
Bst6I CTCTTC 1 cut(s) 6
BstDEI CTNAG 3 cut(s) 27, 52, 180
BstKTI GATC 3 cut(s) 72, 85, 102
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 3 cut(s) 69, 82, 99
BstNI CCWGG 1 cut(s) 43
BstPAI GACNNNNGTC 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 41
BsuRI GGCC 1 cut(s) 141
BtsIMutI CAGTG 2 cut(s) 24, 202
CseI GACGC 1 cut(s) 197
CviAII CATG 1 cut(s) 86
CviJI RGCY 3 cut(s) 31, 67, 141
CviKI_1 RGCY 3 cut(s) 31, 67, 141
DdeI CTNAG 3 cut(s) 27, 52, 180
DpnI GATC 3 cut(s) 71, 84, 101
DpnII GATC 3 cut(s) 69, 82, 99
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Ecl136II GAGCTC 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 33
Eco53kI GAGCTC 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 41
EcoT22I ATGCAT 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 33
Esp3I CGTCTC 1 cut(s) 180
FaeI CATG 1 cut(s) 89
FaiI YATR 2 cut(s) 87, 135
FatI CATG 1 cut(s) 85
FbaI TGATCA 1 cut(s) 69
FriOI GRGCYC 1 cut(s) 33
HaeIII GGCC 1 cut(s) 141
HgaI GACGC 1 cut(s) 197
Hin1II CATG 1 cut(s) 89
HinfI GANTC 1 cut(s) 210
HphI GGTGA 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 2 cut(s) 116, 203
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 2 cut(s) 197, 246
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 4, 89
HpyF3I CTNAG 3 cut(s) 27, 52, 180
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 1 cut(s) 89
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 3 cut(s) 69, 82, 99
LpnPI CCDG 7 cut(s) 28, 49, 55, 123, 155, 167, 199
LweI GCATC 3 cut(s) 98, 121, 138
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 167
MalI GATC 3 cut(s) 71, 84, 101
MboI GATC 3 cut(s) 69, 82, 99
MboII GAAGA 3 cut(s) 23, 232, 235
MhlI GDGCHC 2 cut(s) 33, 181
MlsI TGGCCA 1 cut(s) 141
MluNI TGGCCA 1 cut(s) 141
MlyI GAGTC 1 cut(s) 204
MnlI CCTC 2 cut(s) 7, 85
Mox20I TGGCCA 1 cut(s) 141
Mph1103I ATGCAT 1 cut(s) 91
MscI TGGCCA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 117
Msp20I TGGCCA 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 43
MvaI CCWGG 1 cut(s) 43
NdeII GATC 3 cut(s) 69, 82, 99
NlaIII CATG 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 91
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
PshAI GACNNNNGTC 1 cut(s) 198
Psp124BI GAGCTC 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 117
SacI GAGCTC 1 cut(s) 33
Sau3AI GATC 3 cut(s) 69, 82, 99
SchI GAGTC 1 cut(s) 204
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 2 cut(s) 33, 181
SetI ASST 3 cut(s) 33, 77, 174
SfaNI GCATC 3 cut(s) 98, 121, 138
SmiMI CAYNNNNRTG 1 cut(s) 117
SstI GAGCTC 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 2 cut(s) 197, 246
TaiI ACGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 77
TaqII GACCGA 1 cut(s) 222
TscAI CASTG 2 cut(s) 31, 202
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 2 cut(s) 31, 202
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.