Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008359

Physical Location & Seq

Genomic Coordinates Reverse (-)

9807236 .. 9808513

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCAAAACGAAGAGGGTCAGGTCACTGAGCTTTACATTCCTAGGAAATGTTCTGCTACTAACCGGTTGATCACATCCAAGGATCATGCCTCTGTTCAGCTCAACATTGGTCATTTAGATGCTAATGGCTTGTACACCGGACAGTTCACAACCTTTGCTCTCTGCGGTTTTGTCCGTGCTCAGGGAGACGCTGACAGTGGTGTCGACAGGTTGTGGCAGAAGAAGAAGGTTGAAGCCAAACAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030490 GO:0031123 GO:0031125 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S21e

Protein Analysis

82

Amino Acids

9.11

Weight (kDa)

7.8

Isoelectric Point (pI)

15.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S21e	PF01249	1 - 77	1.7e-37	Ribosomal protein S21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53890 AT3G53890 AT5G27700
fragaria_vesca	FvH4_4g17990 FvH4_4g17990 FvH4_4g17990 FvH4_4g17990 FvH4_6g28030 FvH4_6g28030
malus_domestica	MD11G1125000.v1.1 MD13G1168900.v1.1 MD16G1170000.v1.1
prunus_persica	Prupe.1G137200_v2.0.a1 Prupe.6G093700_v2.0.a1
pyrus_communis	pycom13g14450 pycom16g14260
rosa_chinensis	RchiOBHm_Chr4g0422191
rosa_multiflora	Rmu_sc0000801.1_g000004 Rmu_sc0003930.1_g000011
rosa_roxburghii	Rroxscaffold_5G00364310
rosa_rugosa	Rorug04G0178400
rosa_samantha	Rh4CG252500
rosa_wichuraiana	Rw4G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgeI	ACCGGT	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	233
AluBI	AGCT	2 cut(s)	31, 100
AluI	AGCT	2 cut(s)	31, 100
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	90
AsiGI	ACCGGT	1 cut(s)	63
AspA2I	CCTAGG	1 cut(s)	41
AvrII	CCTAGG	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	181
BclI	TGATCA	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	1 cut(s)	42
BlnI	CCTAGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	109
Bpu10I	CCTNAGC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	41, 78
BsaWI	WCCGGW	2 cut(s)	63, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse118I	RCCGGY	1 cut(s)	63
BseDI	CCNNGG	2 cut(s)	41, 78
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	2 cut(s)	18, 194
BshTI	ACCGGT	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	64, 138
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	180
BsmBI	CGTCTC	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	69, 82
BspACI	CCGC	1 cut(s)	165
BspCNI	CTCAG	2 cut(s)	19, 193
BspPI	GGATC	1 cut(s)	90
BsrFI	RCCGGY	1 cut(s)	63
BsrGI	TGTACA	1 cut(s)	132
BssAI	RCCGGY	1 cut(s)	63
BssECI	CCNNGG	2 cut(s)	41, 78
BssMI	GATC	2 cut(s)	69, 82
BssT1I	CCWWGG	2 cut(s)	41, 78
Bst4CI	ACNGT	2 cut(s)	144, 197
Bst6I	CTCTTC	1 cut(s)	6
BstAUI	TGTACA	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	27, 180
BstF5I	GGATG	1 cut(s)	74
BstKTI	GATC	2 cut(s)	72, 85
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	2 cut(s)	69, 82
BtsCI	GGATG	1 cut(s)	74
BtsIMutI	CAGTG	2 cut(s)	24, 202
Cfr10I	RCCGGY	1 cut(s)	63
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	133
CspAI	ACCGGT	1 cut(s)	63
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	4 cut(s)	31, 100, 129, 236
CviKI_1	RGCY	4 cut(s)	31, 100, 129, 236
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	2 cut(s)	27, 180
DpnI	GATC	2 cut(s)	71, 84
DpnII	GATC	2 cut(s)	69, 82
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	41, 78
EcoT14I	CCWWGG	2 cut(s)	41, 78
ErhI	CCWWGG	2 cut(s)	41, 78
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	1 cut(s)	89
FaiI	YATR	1 cut(s)	87
FatI	CATG	1 cut(s)	85
FbaI	TGATCA	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	204
FokI	GGATG	1 cut(s)	61
FspBI	CTAG	1 cut(s)	42
HapII	CCGG	2 cut(s)	64, 138
HgaI	GACGC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	89
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HpaII	CCGG	2 cut(s)	64, 138
Hpy166II	GTNNAC	3 cut(s)	135, 147, 205
Hpy8I	GTNNAC	3 cut(s)	135, 147, 205
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	2 cut(s)	144, 197
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	27, 180
Hsp92II	CATG	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	69, 82
LpnPI	CCDG	5 cut(s)	5, 77, 151, 167, 193
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	2 cut(s)	71, 84
MboI	GATC	2 cut(s)	69, 82
MboII	GAAGA	3 cut(s)	23, 232, 235
MhlI	GDGCHC	1 cut(s)	181
MnlI	CCTC	2 cut(s)	7, 100
MslI	CAYNNNNRTG	1 cut(s)	117
MspI	CCGG	2 cut(s)	64, 138
NdeII	GATC	2 cut(s)	69, 82
NlaIII	CATG	1 cut(s)	89
NmuCI	GTSAC	1 cut(s)	22
PinAI	ACCGGT	1 cut(s)	63
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	117
SalI	GTCGAC	1 cut(s)	203
Sau3AI	GATC	2 cut(s)	69, 82
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	6 cut(s)	24, 33, 102, 155, 212, 231
SfaNI	GCATC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	117
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	42
StyI	CCWWGG	2 cut(s)	41, 78
TaaI	ACNGT	2 cut(s)	144, 197
TaqI	TCGA	1 cut(s)	204
TatI	WGTACW	1 cut(s)	132
TscAI	CASTG	2 cut(s)	31, 202
TseFI	GTSAC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	22
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	31, 202
XmaJI	CCTAGG	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.