Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007630

Physical Location & Seq

Genomic Coordinates Forward (+)

20038670 .. 20041210

Gene Structure 2541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G54110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGTGGCGGCTGGTAAATCCGACCTTTCCTTGCCCAAAACTTTCGCCTGCAGTGCCTTCGCTGCTTGCGTCGGCGAGGTATGCACAATTCCATTGGACACTGCTAAAGTTAGGCTTCAGCTCCAAAAGTCTGCTCTTGCTGGTGATGTTACTCTGCCTAAATATCGAGGATTGTTGGGAACTGTTGGTACCATAGCAAGGGAAGAAGGGTTACGTTCACTATGGAAAGGTGTTGTACCTGGATTGCATCGTCAATGCCTATTTGGAGGTCTTAGGATTGGAATGTATGAGCCGGTGAAAAACTTGTATGTTGGAAAAGACTTTGTAGGTGATGTTCCATTGAGCAAGAAAATTCTTGCTGGTTTGACAACAGGTGCACTGGGTATCATGGTAGCAAATCCCACTGATCTTGTGAAAGTTAGGCTTCAGGCCGAAGGAAAACTAGCTGCAGGTGCGCCAAGACGGTATTCTGGAGCGCTGAATGCTTATTCAACAATTGTGAGACAGGAAGGAGTCCGAGCTCTTTGGACTGGTCTTGGACCTAACGTAGCAAGAAACGCTATTATCAATGCTGCTGAATTAGCGAGTTACGATCAAGTGAAAGAGACGATCTTGAAGATTCCGGGTTTCACTGACAACGTTGTCACACATATTCTATCTGGACTGGGAGCAGGATTCTTTGCTGTCTGCATCGGCTCTCCTGTCGACGTGGTTAAGTCAAGAATGATGGGAGATTCTGGTGCTTACAAGGGCACCATTGACTGCTTCGTCAAAACTCTGAAGAGCGACGGTCCTATGGCATTTTACAAGGGTTTCATCCCCAACTTTGGACGCCTTGGCTCATGGAACGTAATCATGTTTTTGACCCTCGAACAGGCAAAGAAGTATGTCCGGGAACTCGATGCGTCCAAAAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

306

Amino Acids

32.66

Weight (kDa)

9.62

Isoelectric Point (pI)

30.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	8 - 106	9.2e-20	Mitochondrial carrier protein
Mito_carr	PF00153	112 - 206	2.6e-23	Mitochondrial carrier protein
Mito_carr	PF00153	212 - 298	9.3e-22	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54110
fragaria_vesca	FvH4_6g12220 FvH4_6g12220 FvH4_6g12220 FvH4_6g12220 FvH4_6g12220
malus_domestica	MD04G1145100.v1.1
prunus_persica	Prupe.6G269400_v2.0.a1
pyrus_communis	pycom04g13130
rosa_chinensis	RchiOBHm_Chr3g0464011
rosa_laevigata	RLG00000013105 RLG00000024728 RLG00000030582
rosa_multiflora	Rmu_co8256601.1_g000001 Rmu_sc0004616.1_g000008
rosa_roxburghii	Rroxscaffold_6G00416060
rosa_rugosa	Rorug01G0017800 Rorug03G0070000 Rorug03G0070100
rosa_samantha	Rh3AG126900 Rh3BG131000 Rh3CG133400 Rh3DG132300
rosa_wichuraiana	Rw3G010720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	440
AasI	GACNNNNNNGTC	2 cut(s)	641, 767
Acc36I	ACCTGC	1 cut(s)	440
Acc65I	GGTACC	1 cut(s)	188
AccB1I	GGYRCC	2 cut(s)	188, 752
AccI	GTMKAC	1 cut(s)	705
AciI	CCGC	1 cut(s)	8
AclI	AACGTT	1 cut(s)	639
AcsI	RAATTY	1 cut(s)	351
AcuI	CTGAAG	3 cut(s)	101, 410, 800
AcyI	GRCGYC	1 cut(s)	832
AfaI	GTAC	2 cut(s)	190, 237
AfeI	AGCGCT	1 cut(s)	477
AfiI	CCNNNNNNNGG	3 cut(s)	198, 827, 874
AgsI	TTSAA	2 cut(s)	492, 616
AjiI	CACGTC	1 cut(s)	709
AjnI	CCWGG	1 cut(s)	238
AjuI	GAANNNNNNNTTGG	2 cut(s)	451, 483
AluBI	AGCT	3 cut(s)	121, 446, 521
AluI	AGCT	3 cut(s)	121, 446, 521
Alw21I	GWGCWC	2 cut(s)	379, 523
Alw26I	GTCTC	2 cut(s)	496, 599
Alw44I	GTGCAC	1 cut(s)	375
Aor51HI	AGCGCT	1 cut(s)	477
AoxI	GGCC	1 cut(s)	429
ApaLI	GTGCAC	1 cut(s)	375
ApeKI	GCWGC	3 cut(s)	62, 446, 572
ApoI	RAATTY	1 cut(s)	351
Asp718I	GGTACC	1 cut(s)	188
AspLEI	GCGC	2 cut(s)	457, 478
AspS9I	GGNCC	2 cut(s)	539, 791
AsuC2I	CCSGG	2 cut(s)	624, 893
AsuHPI	GGTGA	3 cut(s)	155, 307, 341
AvaII	GGWCC	2 cut(s)	539, 791
BaeGI	GKGCMC	2 cut(s)	379, 755
BanI	GGYRCC	2 cut(s)	188, 752
BanII	GRGCYC	1 cut(s)	523
BarI	GAAGNNNNNNTAC	2 cut(s)	195, 227
Bbv12I	GWGCWC	2 cut(s)	379, 523
BbvI	GCAGC	3 cut(s)	49, 433, 559
BccI	CCATC	1 cut(s)	721
BcgI	CGANNNNNNTGC	2 cut(s)	40, 74
BciT130I	CCWGG	1 cut(s)	240
BcnI	CCSGG	2 cut(s)	624, 893
BcoDI	GTCTC	2 cut(s)	496, 599
BfaI	CTAG	1 cut(s)	443
BfmI	CTRYAG	2 cut(s)	49, 447
BfoI	RGCGCY	1 cut(s)	479
BfuAI	ACCTGC	1 cut(s)	440
BisI	GCNGC	4 cut(s)	9, 63, 447, 573
BlsI	GCNGC	4 cut(s)	10, 64, 448, 574
Bme1390I	CCNGG	3 cut(s)	240, 624, 893
Bme18I	GGWCC	2 cut(s)	539, 791
BmgBI	CACGTC	1 cut(s)	709
BmgT120I	GGNCC	2 cut(s)	539, 791
BmiI	GGNNCC	2 cut(s)	190, 754
BmrFI	CCNGG	3 cut(s)	240, 624, 893
BmrI	ACTGGG	2 cut(s)	389, 674
BmsI	GCATC	3 cut(s)	256, 699, 892
BmuI	ACTGGG	2 cut(s)	389, 674
BpmI	CTGGAG	1 cut(s)	492
BpuMI	CCSGG	2 cut(s)	624, 893
BsaHI	GRCGYC	1 cut(s)	832
BsaJI	CCNNGG	1 cut(s)	835
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 827, 874
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	3 cut(s)	384, 535, 669
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	835
BseGI	GGATG	1 cut(s)	816
BseLI	CCNNNNNNNGG	3 cut(s)	198, 827, 874
BseNI	ACTGG	3 cut(s)	384, 535, 669
BseSI	GKGCMC	2 cut(s)	379, 755
BseXI	GCAGC	3 cut(s)	49, 433, 559
BshFI	GGCC	1 cut(s)	431
BshNI	GGYRCC	2 cut(s)	188, 752
BsiHKAI	GWGCWC	2 cut(s)	379, 523
BsiSI	CCGG	3 cut(s)	293, 623, 892
BslI	CCNNNNNNNGG	3 cut(s)	198, 827, 874
BsmAI	GTCTC	2 cut(s)	496, 599
BsmBI	CGTCTC	1 cut(s)	599
BsmI	GAATGC	1 cut(s)	487
BsnI	GGCC	1 cut(s)	431
Bsp1286I	GDGCHC	3 cut(s)	379, 523, 755
Bsp143I	GATC	3 cut(s)	406, 592, 609
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	431
BspLI	GGNNCC	2 cut(s)	190, 754
BspMAI	CTGCAG	2 cut(s)	53, 451
BspMI	ACCTGC	1 cut(s)	440
BspQI	GCTCTTC	1 cut(s)	776
BspT107I	GGYRCC	2 cut(s)	188, 752
BsrFI	RCCGGY	1 cut(s)	292
BsrI	ACTGG	3 cut(s)	384, 535, 669
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	835
BssMI	GATC	3 cut(s)	406, 592, 609
BssNI	GRCGYC	1 cut(s)	832
BssT1I	CCWWGG	1 cut(s)	835
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	3 cut(s)	184, 465, 791
Bst6I	CTCTTC	1 cut(s)	776
BstACI	GRCGYC	1 cut(s)	832
BstC8I	GCNNGC	2 cut(s)	49, 67
BstDEI	CTNAG	1 cut(s)	272
BstENI	CCTNNNNNAGG	1 cut(s)	872
BstF5I	GGATG	1 cut(s)	816
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	2 cut(s)	457, 478
BstKTI	GATC	3 cut(s)	409, 595, 612
BstMAI	GTCTC	2 cut(s)	496, 599
BstMBI	GATC	3 cut(s)	406, 592, 609
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 62, 81, 452, 482, 557, 581
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	3 cut(s)	238, 622, 891
BstSFI	CTRYAG	2 cut(s)	49, 447
BstSLI	GKGCMC	2 cut(s)	379, 755
BstV1I	GCAGC	3 cut(s)	49, 433, 559
BsuRI	GGCC	1 cut(s)	431
BtrI	CACGTC	1 cut(s)	709
BtsCI	GGATG	1 cut(s)	816
BtsI	GCAGTG	2 cut(s)	58, 99
BtsIMutI	CAGTG	5 cut(s)	58, 99, 377, 402, 630
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	2 cut(s)	49, 67
CfoI	GCGC	2 cut(s)	457, 478
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	2 cut(s)	539, 791
CseI	GACGC	3 cut(s)	58, 840, 894
Csp6I	GTAC	2 cut(s)	189, 236
CspCI	CAANNNNNGTGG	2 cut(s)	391, 426
CviAII	CATG	3 cut(s)	388, 843, 856
CviQI	GTAC	2 cut(s)	189, 236
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	3 cut(s)	408, 594, 611
DpnII	GATC	3 cut(s)	406, 592, 609
DrdI	GACNNNNNNGTC	2 cut(s)	641, 767
DseDI	GACNNNNNNGTC	2 cut(s)	641, 767
Eam1104I	CTCTTC	1 cut(s)	776
EarI	CTCTTC	1 cut(s)	776
Ecl136II	GAGCTC	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	835
Eco24I	GRGCYC	1 cut(s)	523
Eco47I	GGWCC	2 cut(s)	539, 791
Eco47III	AGCGCT	1 cut(s)	477
Eco53kI	GAGCTC	1 cut(s)	521
Eco57I	CTGAAG	3 cut(s)	101, 410, 800
EcoICRI	GAGCTC	1 cut(s)	521
EcoNI	CCTNNNNNAGG	1 cut(s)	872
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	835
EcoT38I	GRGCYC	1 cut(s)	523
ErhI	CCWWGG	1 cut(s)	835
Esp3I	CGTCTC	1 cut(s)	599
FaeI	CATG	3 cut(s)	391, 846, 859
FalI	AAGNNNNNCTT	4 cut(s)	99, 131, 408, 440
FatI	CATG	3 cut(s)	387, 842, 855
FblI	GTMKAC	1 cut(s)	705
Fnu4HI	GCNGC	4 cut(s)	9, 63, 447, 573
FokI	GGATG	1 cut(s)	803
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	4 cut(s)	9, 63, 447, 573
FspBI	CTAG	1 cut(s)	443
GlaI	GCGC	2 cut(s)	456, 477
GluI	GCNGC	4 cut(s)	9, 63, 447, 573
GsuI	CTGGAG	1 cut(s)	492
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	1 cut(s)	431
HapII	CCGG	3 cut(s)	293, 623, 892
HgaI	GACGC	3 cut(s)	58, 840, 894
HhaI	GCGC	2 cut(s)	457, 478
Hin1I	GRCGYC	1 cut(s)	832
Hin1II	CATG	3 cut(s)	391, 846, 859
Hin6I	GCGC	2 cut(s)	455, 476
HinP1I	GCGC	2 cut(s)	455, 476
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HinfI	GANTC	4 cut(s)	513, 619, 675, 734
HpaII	CCGG	3 cut(s)	293, 623, 892
HphI	GGTGA	3 cut(s)	155, 307, 341
Hpy166II	GTNNAC	3 cut(s)	218, 377, 706
Hpy188I	TCNGA	3 cut(s)	22, 518, 780
Hpy188III	TCNNGA	4 cut(s)	471, 613, 660, 720
Hpy8I	GTNNAC	3 cut(s)	218, 377, 706
Hpy99I	CGWCG	3 cut(s)	74, 710, 791
HpyAV	CCTTC	4 cut(s)	67, 200, 428, 503
HpyCH4III	ACNGT	3 cut(s)	184, 465, 791
HpyCH4IV	ACGT	5 cut(s)	214, 546, 639, 708, 849
HpyCH4V	TGCA	6 cut(s)	51, 84, 247, 377, 449, 690
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 62, 81, 452, 482, 557, 581
HpyF3I	CTNAG	1 cut(s)	272
HpySE526I	ACGT	5 cut(s)	214, 546, 639, 708, 849
Hsp92I	GRCGYC	1 cut(s)	832
Hsp92II	CATG	3 cut(s)	391, 846, 859
HspAI	GCGC	2 cut(s)	455, 476
KpnI	GGTACC	1 cut(s)	192
Kzo9I	GATC	3 cut(s)	406, 592, 609
LguI	GCTCTTC	1 cut(s)	776
LmnI	GCTCC	3 cut(s)	126, 473, 668
Lsp1109I	GCAGC	3 cut(s)	49, 433, 559
LweI	GCATC	3 cut(s)	256, 699, 892
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	5 cut(s)	214, 546, 639, 708, 849
MaeIII	GTNAC	4 cut(s)	148, 210, 587, 643
MalI	GATC	3 cut(s)	408, 594, 611
MboI	GATC	3 cut(s)	406, 592, 609
MboII	GAAGA	3 cut(s)	215, 628, 793
MfeI	CAATTG	1 cut(s)	495
MhlI	GDGCHC	3 cut(s)	379, 523, 755
MluCI	AATT	4 cut(s)	87, 351, 495, 578
MlyI	GAGTC	1 cut(s)	522
MmeI	TCCRAC	2 cut(s)	45, 292
MnlI	CCTC	4 cut(s)	70, 161, 260, 878
MseI	TTAA	1 cut(s)	714
MspI	CCGG	3 cut(s)	293, 623, 892
MspR9I	CCNGG	3 cut(s)	240, 624, 893
MunI	CAATTG	1 cut(s)	495
Mva1269I	GAATGC	1 cut(s)	487
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	7 cut(s)	53, 62, 81, 452, 482, 557, 581
NciI	CCSGG	2 cut(s)	624, 893
NdeII	GATC	3 cut(s)	406, 592, 609
NlaIII	CATG	3 cut(s)	391, 846, 859
NlaIV	GGNNCC	2 cut(s)	190, 754
NmuCI	GTSAC	1 cut(s)	643
PaqCI	CACCTGC	1 cut(s)	440
PciSI	GCTCTTC	1 cut(s)	776
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PctI	GAATGC	1 cut(s)	487
PfeI	GAWTC	3 cut(s)	619, 675, 734
PfoI	TCCNGGA	1 cut(s)	891
PkrI	GCNGC	4 cut(s)	10, 64, 448, 574
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
Psp124BI	GAGCTC	1 cut(s)	523
Psp1406I	AACGTT	1 cut(s)	639
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	190, 754
PspPI	GGNCC	2 cut(s)	539, 791
PsrI	GAACNNNNNNTAC	4 cut(s)	172, 204, 318, 350
PstI	CTGCAG	2 cut(s)	53, 451
RsaI	GTAC	2 cut(s)	190, 237
RsaNI	GTAC	2 cut(s)	189, 236
SacI	GAGCTC	1 cut(s)	523
SalI	GTCGAC	1 cut(s)	704
SapI	GCTCTTC	1 cut(s)	776
SaqAI	TTAA	1 cut(s)	714
SatI	GCNGC	4 cut(s)	9, 63, 447, 573
Sau3AI	GATC	3 cut(s)	406, 592, 609
Sau96I	GGNCC	2 cut(s)	539, 791
SchI	GAGTC	1 cut(s)	522
ScrFI	CCNGG	3 cut(s)	240, 624, 893
SduI	GDGCHC	3 cut(s)	379, 523, 755
SfaNI	GCATC	3 cut(s)	256, 699, 892
SfcI	CTRYAG	2 cut(s)	49, 447
SinI	GGWCC	2 cut(s)	539, 791
Sse9I	AATT	4 cut(s)	87, 351, 495, 578
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	443
SstI	GAGCTC	1 cut(s)	523
StyD4I	CCNGG	3 cut(s)	238, 622, 891
StyI	CCWWGG	1 cut(s)	835
TaaI	ACNGT	3 cut(s)	184, 465, 791
TaiI	ACGT	5 cut(s)	217, 549, 642, 711, 852
TaqI	TCGA	4 cut(s)	166, 705, 870, 900
TasI	AATT	4 cut(s)	87, 351, 495, 578
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	3 cut(s)	619, 675, 734
Tru1I	TTAA	1 cut(s)	714
Tru9I	TTAA	1 cut(s)	714
TscAI	CASTG	5 cut(s)	58, 106, 384, 409, 637
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	3 cut(s)	62, 446, 572
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	1 cut(s)	805
TspRI	CASTG	5 cut(s)	58, 106, 384, 409, 637
VneI	GTGCAC	1 cut(s)	375
VpaK11BI	GGWCC	2 cut(s)	539, 791
XagI	CCTNNNNNAGG	1 cut(s)	872
XapI	RAATTY	1 cut(s)	351
XmiI	GTMKAC	1 cut(s)	705
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.