Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007630

Physical Location & Seq

Genomic Coordinates Forward (+)

16136830 .. 16139916

Gene Structure 3087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13130.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGTGGCCGATAGCAAGTCCAAATCCGACATTTCTTTCGCCGGCACTTTTGCAAGCAGCGCCTTCTCCGCCTGTTTTGCTGAGATTTGTACTATTCCGTTGGACACGGCTAAAGTCAGGCTTCAACTCCAGAAGAAAGCTGTTGCAGGTGATGGAGTGGCCTTACCTAAATACAGGGGTATGCTGGGCACAGTTGCTACCATAGCCAGGGAAGAAGGTCTGACGGCACTCTGGAAAGGAATTATACCTGGATTGCATCGTCAATGCCTATATGGAGGTTTAAGAATTGGGTTGTATGATCCTATCAAGTCCTTCTATTGTGGAGGCAGTGACTTTGTTGGTGATGTTCCTTTAACAAAGAAAATACTTGCTGCCTTAACAACTGGTGCTTTAGCAATCACAGTGGCAAATCCAACTGATCTTGTGAAAGTTAGACTTCAAGCTGAAGGAAAATTACCACCTGGTGCCCCAAGGCGTTATTCGGGATCACTGAATGCGTATTCCACCATTGTGAGACAGGAGGGAGTTGGGGCACTCTGGACTGGGATCGGACCCAACATTGCACGTAATTCTATTATTAATGCTGCCGAACTAGCCAGTTATGATCAAGTGAAGGAGACACTTCTAAAACTTCCAGGGTTCTCGGATAATGTTGTCACTCATCTTCTTTCTGGTCTGGGGGCTGGTTTCTTTGCTGTCTGTATTGGCTCACCAGTTGATGTGGTTAAGTCAAGGATGATGGGAGATTCTGCTTACAAAAACACGATGGATTGCTTCCTCAAAACTCTGAAGAATGATGGACCTTTGGCCTTTTACAAGGGCTTCATCCCAAATTTTGGACGGCTAGGATCGTGGAATGTCATCATGTTTCTAACCCTTGAGCAGGTTAAGAAGGTTGTGAGAAATATAGAGTCATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

307

Amino Acids

32.65

Weight (kDa)

9.38

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54110
fragaria_vesca	FvH4_6g12220 FvH4_6g12220 FvH4_6g12220 FvH4_6g12220 FvH4_6g12220
malus_domestica	MD04G1145100.v1.1
prunus_persica	Prupe.6G269400_v2.0.a1
pyrus_communis	pycom04g13130
rosa_chinensis	RchiOBHm_Chr3g0464011
rosa_laevigata	RLG00000013105 RLG00000024728 RLG00000030582
rosa_multiflora	Rmu_co8256601.1_g000001 Rmu_sc0004616.1_g000008
rosa_roxburghii	Rroxscaffold_6G00416060
rosa_rugosa	Rorug01G0017800 Rorug03G0070000 Rorug03G0070100
rosa_samantha	Rh3AG126900 Rh3BG131000 Rh3CG133400 Rh3DG132300
rosa_wichuraiana	Rw3G010720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	137
Acc36I	ACCTGC	2 cut(s)	137, 874
AccB1I	GGYRCC	1 cut(s)	464
AccB7I	CCANNNNNTGG	1 cut(s)	836
AciI	CCGC	1 cut(s)	69
AclWI	GGATC	4 cut(s)	293, 493, 554, 856
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	832
AcuI	CTGAAG	2 cut(s)	465, 809
AdeI	CACNNNGTG	1 cut(s)	464
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	3 cut(s)	207, 836, 883
AgsI	TTSAA	2 cut(s)	125, 440
AjnI	CCWGG	4 cut(s)	206, 247, 460, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	463, 495
AleI	CACNNNNGTG	1 cut(s)	509
AluBI	AGCT	2 cut(s)	140, 443
AluI	AGCT	2 cut(s)	140, 443
Alw26I	GTCTC	2 cut(s)	508, 611
AlwI	GGATC	4 cut(s)	293, 493, 554, 856
AoxI	GGCC	3 cut(s)	6, 159, 807
ApeKI	GCWGC	3 cut(s)	57, 371, 584
ApoI	RAATTY	1 cut(s)	832
ArsI	GACNNNNNNTTYG	2 cut(s)	20, 52
AseI	ATTAAT	1 cut(s)	579
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	2 cut(s)	551, 800
AsuHPI	GGTGA	3 cut(s)	161, 353, 702
AvaII	GGWCC	2 cut(s)	551, 800
BaeGI	GKGCMC	3 cut(s)	191, 469, 535
BanI	GGYRCC	1 cut(s)	464
BarI	GAAGNNNNNNTAC	2 cut(s)	438, 470
BbvI	GCAGC	3 cut(s)	69, 358, 571
BccI	CCATC	4 cut(s)	146, 733, 760, 791
BceAI	ACGGC	3 cut(s)	123, 240, 857
BciT130I	CCWGG	4 cut(s)	208, 249, 462, 636
BclI	TGATCA	1 cut(s)	604
BcoDI	GTCTC	2 cut(s)	508, 611
BfaI	CTAG	2 cut(s)	593, 845
BfoI	RGCGCY	1 cut(s)	63
BfuAI	ACCTGC	2 cut(s)	137, 874
BisI	GCNGC	3 cut(s)	58, 372, 585
BlsI	GCNGC	3 cut(s)	59, 373, 586
Bme1390I	CCNGG	4 cut(s)	208, 249, 462, 636
Bme18I	GGWCC	2 cut(s)	551, 800
BmgT120I	GGNCC	2 cut(s)	551, 800
BmiI	GGNNCC	2 cut(s)	466, 553
BmrFI	CCNGG	4 cut(s)	208, 249, 462, 636
BmrI	ACTGGG	1 cut(s)	552
BmsI	GCATC	1 cut(s)	265
BmuI	ACTGGG	1 cut(s)	552
BpmI	CTGGAG	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	899
BsaAI	YACGTR	1 cut(s)	566
BsaJI	CCNNGG	3 cut(s)	207, 470, 635
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 836, 883
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	4 cut(s)	388, 547, 597, 713
Bse3DI	GCAATG	1 cut(s)	558
BseBI	CCWGG	4 cut(s)	208, 249, 462, 636
BseDI	CCNNGG	3 cut(s)	207, 470, 635
BseGI	GGATG	2 cut(s)	741, 825
BseLI	CCNNNNNNNGG	3 cut(s)	207, 836, 883
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	4 cut(s)	388, 547, 597, 713
BseSI	GKGCMC	3 cut(s)	191, 469, 535
BseXI	GCAGC	3 cut(s)	69, 358, 571
BseYI	CCCAGC	1 cut(s)	184
BshFI	GGCC	3 cut(s)	8, 161, 809
BshNI	GGYRCC	1 cut(s)	464
BsiSI	CCGG	1 cut(s)	42
BslI	CCNNNNNNNGG	3 cut(s)	207, 836, 883
BsmAI	GTCTC	2 cut(s)	508, 611
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	3 cut(s)	8, 161, 809
Bsp1286I	GDGCHC	3 cut(s)	191, 469, 535
Bsp143I	GATC	6 cut(s)	298, 418, 485, 546, 604, 848
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	3 cut(s)	8, 161, 809
BspCNI	CTCAG	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	466, 553
BspMI	ACCTGC	2 cut(s)	137, 874
BspPI	GGATC	4 cut(s)	293, 493, 554, 856
BspT107I	GGYRCC	1 cut(s)	464
BsrDI	GCAATG	1 cut(s)	558
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	4 cut(s)	388, 547, 597, 713
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	3 cut(s)	207, 470, 635
BssMI	GATC	6 cut(s)	298, 418, 485, 546, 604, 848
BssT1I	CCWWGG	1 cut(s)	470
Bst2UI	CCWGG	4 cut(s)	208, 249, 462, 636
Bst4CI	ACNGT	2 cut(s)	193, 403
BstBAI	YACGTR	1 cut(s)	566
BstC8I	GCNNGC	2 cut(s)	43, 55
BstDEI	CTNAG	1 cut(s)	81
BstENI	CCTNNNNNAGG	1 cut(s)	881
BstF5I	GGATG	2 cut(s)	741, 825
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	6 cut(s)	301, 421, 488, 549, 607, 851
BstMAI	GTCTC	2 cut(s)	508, 611
BstMBI	GATC	6 cut(s)	298, 418, 485, 546, 604, 848
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 68, 77, 203, 593
BstNI	CCWGG	4 cut(s)	208, 249, 462, 636
BstSCI	CCNGG	4 cut(s)	206, 247, 460, 634
BstSLI	GKGCMC	3 cut(s)	191, 469, 535
BstV1I	GCAGC	3 cut(s)	69, 358, 571
BsuRI	GGCC	3 cut(s)	8, 161, 809
BtsCI	GGATG	2 cut(s)	741, 825
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	3 cut(s)	334, 408, 488
BveI	ACCTGC	2 cut(s)	137, 874
Cac8I	GCNNGC	2 cut(s)	43, 55
CfoI	GCGC	1 cut(s)	62
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	551, 800
CsiI	ACCWGGT	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	90
CspCI	CAANNNNNGTGG	2 cut(s)	384, 419
CviAII	CATG	1 cut(s)	865
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	6 cut(s)	300, 420, 487, 548, 606, 850
DpnII	GATC	6 cut(s)	298, 418, 485, 546, 604, 848
DraIII	CACNNNGTG	1 cut(s)	464
EaeI	YGGCCR	1 cut(s)	6
EciI	GGCGGA	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	470
Eco47I	GGWCC	2 cut(s)	551, 800
Eco57I	CTGAAG	2 cut(s)	465, 809
EcoNI	CCTNNNNNAGG	1 cut(s)	881
EcoRII	CCWGG	4 cut(s)	206, 247, 460, 634
EcoT14I	CCWWGG	1 cut(s)	470
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	1 cut(s)	868
FaiI	YATR	9 cut(s)	182, 203, 245, 271, 273, 297, 603, 866, 908
FalI	AAGNNNNNCTT	4 cut(s)	105, 137, 420, 452
FatI	CATG	1 cut(s)	864
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	3 cut(s)	58, 372, 585
FokI	GGATG	2 cut(s)	748, 812
Fsp4HI	GCNGC	3 cut(s)	58, 372, 585
FspBI	CTAG	2 cut(s)	593, 845
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	3 cut(s)	58, 372, 585
GsaI	CCCAGC	1 cut(s)	188
GsuI	CTGGAG	1 cut(s)	113
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	3 cut(s)	8, 161, 809
HapII	CCGG	1 cut(s)	42
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	868
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HinfI	GANTC	2 cut(s)	746, 911
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	3 cut(s)	161, 353, 702
Hpy188I	TCNGA	5 cut(s)	28, 222, 551, 646, 789
Hpy188III	TCNNGA	5 cut(s)	130, 232, 483, 538, 918
HpyAV	CCTTC	6 cut(s)	73, 209, 322, 440, 607, 886
HpyCH4III	ACNGT	2 cut(s)	193, 403
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	4 cut(s)	53, 146, 256, 563
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 68, 77, 203, 593
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	1 cut(s)	565
Hsp92II	CATG	1 cut(s)	868
HspAI	GCGC	1 cut(s)	60
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	6 cut(s)	298, 418, 485, 546, 604, 848
Lsp1109I	GCAGC	3 cut(s)	69, 358, 571
LweI	GCATC	1 cut(s)	265
MabI	ACCWGGT	1 cut(s)	460
MaeI	CTAG	2 cut(s)	593, 845
MaeII	ACGT	1 cut(s)	565
MaeIII	GTNAC	2 cut(s)	329, 655
MalI	GATC	6 cut(s)	300, 420, 487, 548, 606, 850
MboI	GATC	6 cut(s)	298, 418, 485, 546, 604, 848
MboII	GAAGA	4 cut(s)	145, 224, 656, 802
MhlI	GDGCHC	3 cut(s)	191, 469, 535
MluCI	AATT	5 cut(s)	240, 285, 452, 568, 832
MlyI	GAGTC	1 cut(s)	920
MmeI	TCCRAC	3 cut(s)	51, 81, 437
MnlI	CCTC	4 cut(s)	269, 317, 514, 788
MroNI	GCCGGC	1 cut(s)	41
MseI	TTAA	6 cut(s)	281, 353, 377, 579, 726, 888
MslI	CAYNNNNRTG	1 cut(s)	509
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	4 cut(s)	208, 249, 462, 636
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	4 cut(s)	208, 249, 462, 636
MwoI	GCNNNNNNNGC	5 cut(s)	59, 68, 77, 203, 593
NaeI	GCCGGC	1 cut(s)	43
NdeII	GATC	6 cut(s)	298, 418, 485, 546, 604, 848
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	1 cut(s)	868
NlaIV	GGNNCC	2 cut(s)	466, 553
NmuCI	GTSAC	2 cut(s)	329, 655
OliI	CACNNNNGTG	1 cut(s)	509
PaqCI	CACCTGC	1 cut(s)	137
PctI	GAATGC	1 cut(s)	499
PdiI	GCCGGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	746
PflMI	CCANNNNNTGG	1 cut(s)	836
PkrI	GCNGC	3 cut(s)	59, 373, 586
PleI	GAGTC	1 cut(s)	919
PpsI	GAGTC	1 cut(s)	919
Ppu21I	YACGTR	1 cut(s)	566
PshBI	ATTAAT	1 cut(s)	579
Psp6I	CCWGG	4 cut(s)	206, 247, 460, 634
PspFI	CCCAGC	1 cut(s)	184
PspGI	CCWGG	4 cut(s)	206, 247, 460, 634
PspN4I	GGNNCC	2 cut(s)	466, 553
PspPI	GGNCC	2 cut(s)	551, 800
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	509
SaqAI	TTAA	6 cut(s)	281, 353, 377, 579, 726, 888
SatI	GCNGC	3 cut(s)	58, 372, 585
Sau3AI	GATC	6 cut(s)	298, 418, 485, 546, 604, 848
Sau96I	GGNCC	2 cut(s)	551, 800
SchI	GAGTC	1 cut(s)	920
ScrFI	CCNGG	4 cut(s)	208, 249, 462, 636
SduI	GDGCHC	3 cut(s)	191, 469, 535
SexAI	ACCWGGT	1 cut(s)	460
SfaNI	GCATC	1 cut(s)	265
SinI	GGWCC	2 cut(s)	551, 800
SmiMI	CAYNNNNRTG	1 cut(s)	509
SmlI	CTYRAG	1 cut(s)	878
SmoI	CTYRAG	1 cut(s)	878
Sse9I	AATT	5 cut(s)	240, 285, 452, 568, 832
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	2 cut(s)	593, 845
StyD4I	CCNGG	4 cut(s)	206, 247, 460, 634
StyI	CCWWGG	1 cut(s)	470
TaaI	ACNGT	2 cut(s)	193, 403
TaiI	ACGT	1 cut(s)	568
TasI	AATT	5 cut(s)	240, 285, 452, 568, 832
TatI	WGTACW	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	746
Tru1I	TTAA	6 cut(s)	281, 353, 377, 579, 726, 888
Tru9I	TTAA	6 cut(s)	281, 353, 377, 579, 726, 888
TscAI	CASTG	3 cut(s)	334, 408, 495
TseFI	GTSAC	2 cut(s)	329, 655
TseI	GCWGC	3 cut(s)	57, 371, 584
Tsp45I	GTSAC	2 cut(s)	329, 655
TspDTI	ATGAA	1 cut(s)	814
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	3 cut(s)	334, 408, 495
Van91I	CCANNNNNTGG	1 cut(s)	836
VpaK11BI	GGWCC	2 cut(s)	551, 800
VspI	ATTAAT	1 cut(s)	579
XagI	CCTNNNNNAGG	1 cut(s)	881
XapI	RAATTY	1 cut(s)	832
XspI	CTAG	2 cut(s)	593, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.