Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0007630

Physical Location & Seq

Genomic Coordinates Reverse (-)

10955829 .. 10961182

Gene Structure 5354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG126900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGTGGCGGATAACAAGAAACCCGACATTTCCTTCGCCGGAACTTTTGCCAGCAGCGCCTTCTCCGCTTGCTTTGCTGAGATTTGTACTATTCCTTTGGACACTGCTAAAGTTAGGCTTCAGCTCCAAAAGAAAGGTGTTGCGGTTGCGGGTGATGTAGTGGCCTTACCTAAATACAGGGGTATGCTGGGCACGGTTGCTACTGTAGCCAGGGAAGAAGGTCTATCAGCTCTTTGGAAAGGAATTGTACCCGGGTTGCATCGTCAGTGCCTGTATGGTGGTTTGAGAATTGGGTTGTATGATCCTATTAAGACCTTATATGTGGGCAATGACTTCGTTGGAGATGTTCCTTTAACAAAGAAAATTCTTGCTGCCTTGACAACAGGTGCTCTAGCAATCACAGTGGCAAATCCAACTGATCTTGTAAAAGTTAGACTTCAAGCTGAGGGAAAATTACCACCAGGTGCACCAAGGCGCTATTCTGGCGCACTGAATGCATATTCCACCATTTTGAGACAGGAGGGAGTTGGGGCTCTCTGGACTGGAATTGGACCTAACATTGCACGTAATGCTATCATTAATGCTGCTGAACTAGCTAGTTATGATCAAGTGAAGCAGACACTTTTGAAAATTCCCGGGTTTAAGGACAATATTGTCACTCATCTATTTGCCGGTCTGGGGGCAGGTTTCTTTGCCGTCTGTATTGGCTCACCAGTTGATGTGGTTAAGTCAAGAATGATGGGAGATTCTGCTGCTTACAAAAGCACAATTGATTGCTTTGTTAAAACTTTAAAGAATGATGGACCTTTGGCCTTTTATAAGGGCTTCATCCCAAATTTTGGAAGGCTAGGATCTTGGAATGTGATCATGTTTCTAACCTTCGAGCAGGTACATGTCTCAAAACCTCCTCCTTCTATATCTCTTCAGCCTTTTGTGTTTTCCGGTCTGTGCATTGGTTTTCTAATTTCACATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

325

Amino Acids

34.68

Weight (kDa)

9.45

Isoelectric Point (pI)

30.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	10 - 109	1.1e-18	Mitochondrial carrier protein
Mito_carr	PF00153	116 - 210	3.1e-22	Mitochondrial carrier protein
Mito_carr	PF00153	216 - 298	2e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54110
fragaria_vesca	FvH4_6g12220 FvH4_6g12220 FvH4_6g12220 FvH4_6g12220 FvH4_6g12220
malus_domestica	MD04G1145100.v1.1
prunus_persica	Prupe.6G269400_v2.0.a1
pyrus_communis	pycom04g13130
rosa_chinensis	RchiOBHm_Chr3g0464011
rosa_laevigata	RLG00000013105 RLG00000024728 RLG00000030582
rosa_multiflora	Rmu_co8256601.1_g000001 Rmu_sc0004616.1_g000008
rosa_roxburghii	Rroxscaffold_6G00416060
rosa_rugosa	Rorug01G0017800 Rorug03G0070000 Rorug03G0070100
rosa_samantha	Rh3AG126900 Rh3BG131000 Rh3CG133400 Rh3DG132300
rosa_wichuraiana	Rw3G010720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	819
AasI	GACNNNNNNGTC	1 cut(s)	653
Acc36I	ACCTGC	2 cut(s)	674, 877
AccB7I	CCANNNNNTGG	1 cut(s)	839
AciI	CCGC	4 cut(s)	8, 66, 143, 149
AclWI	GGATC	2 cut(s)	296, 859
AcsI	RAATTY	3 cut(s)	363, 630, 835
AcuI	CTGAAG	2 cut(s)	104, 908
AdeI	CACNNNGTG	1 cut(s)	464
AfaI	GTAC	3 cut(s)	88, 249, 891
AfiI	CCNNNNNNNGG	2 cut(s)	678, 839
AflIII	ACRYGT	1 cut(s)	892
AgsI	TTSAA	2 cut(s)	440, 628
AjnI	CCWGG	2 cut(s)	209, 460
AjuI	GAANNNNNNNTTGG	2 cut(s)	463, 495
AluBI	AGCT	4 cut(s)	124, 230, 443, 596
AluI	AGCT	4 cut(s)	124, 230, 443, 596
Alw21I	GWGCWC	2 cut(s)	391, 469
Alw26I	GTCTC	2 cut(s)	508, 901
Alw44I	GTGCAC	1 cut(s)	465
AlwI	GGATC	2 cut(s)	296, 859
AlwNI	CAGNNNCTG	1 cut(s)	271
Ama87I	CYCGRG	2 cut(s)	251, 635
AoxI	GGCC	2 cut(s)	162, 810
ApaLI	GTGCAC	1 cut(s)	465
ApeKI	GCWGC	4 cut(s)	54, 371, 584, 752
ApoI	RAATTY	3 cut(s)	363, 630, 835
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AseI	ATTAAT	1 cut(s)	579
AspLEI	GCGC	3 cut(s)	59, 477, 488
AspS9I	GGNCC	2 cut(s)	551, 803
AsuC2I	CCSGG	4 cut(s)	252, 253, 636, 637
AsuHPI	GGTGA	2 cut(s)	164, 702
AvaI	CYCGRG	2 cut(s)	251, 635
AvaII	GGWCC	2 cut(s)	551, 803
BaeGI	GKGCMC	2 cut(s)	194, 469
BanII	GRGCYC	1 cut(s)	535
Bbv12I	GWGCWC	2 cut(s)	391, 469
BbvCI	CCTCAGC	1 cut(s)	444
BbvI	GCAGC	4 cut(s)	66, 358, 571, 739
BccI	CCATC	2 cut(s)	733, 794
BceAI	ACGGC	1 cut(s)	680
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciT130I	CCWGG	2 cut(s)	211, 462
BclI	TGATCA	2 cut(s)	604, 864
BcnI	CCSGG	4 cut(s)	252, 253, 636, 637
BcoDI	GTCTC	2 cut(s)	508, 901
BfaI	CTAG	4 cut(s)	392, 593, 597, 848
BfmI	CTRYAG	1 cut(s)	204
BfoI	RGCGCY	2 cut(s)	60, 478
BfuAI	ACCTGC	2 cut(s)	674, 877
BisI	GCNGC	4 cut(s)	55, 372, 585, 753
BlsI	GCNGC	4 cut(s)	56, 373, 586, 754
Bme1390I	CCNGG	6 cut(s)	211, 252, 253, 462, 636, 637
Bme18I	GGWCC	2 cut(s)	551, 803
BmeT110I	CYCGRG	2 cut(s)	251, 635
BmgT120I	GGNCC	2 cut(s)	551, 803
BmrFI	CCNGG	6 cut(s)	211, 252, 253, 462, 636, 637
BmsI	GCATC	1 cut(s)	268
Bpu10I	CCTNAGC	1 cut(s)	444
BpuMI	CCSGG	4 cut(s)	252, 253, 636, 637
BsaAI	YACGTR	1 cut(s)	566
BsaJI	CCNNGG	4 cut(s)	210, 251, 470, 635
BsaWI	WCCGGW	1 cut(s)	941
Bsc4I	CCNNNNNNNGG	2 cut(s)	678, 839
Bse118I	RCCGGY	1 cut(s)	671
Bse1I	ACTGG	2 cut(s)	547, 713
Bse3DI	GCAATG	2 cut(s)	334, 558
BseBI	CCWGG	2 cut(s)	211, 462
BseDI	CCNNGG	4 cut(s)	210, 251, 470, 635
BseGI	GGATG	1 cut(s)	828
BseLI	CCNNNNNNNGG	2 cut(s)	678, 839
BseMI	GCAATG	2 cut(s)	334, 558
BseMII	CTCAG	2 cut(s)	69, 435
BseNI	ACTGG	2 cut(s)	547, 713
BseRI	GAGGAG	1 cut(s)	897
BseSI	GKGCMC	2 cut(s)	194, 469
BseXI	GCAGC	4 cut(s)	66, 358, 571, 739
BseYI	CCCAGC	1 cut(s)	187
BshFI	GGCC	2 cut(s)	164, 812
BsiHKAI	GWGCWC	2 cut(s)	391, 469
BsiHKCI	CYCGRG	2 cut(s)	251, 635
BsiSI	CCGG	5 cut(s)	39, 252, 636, 672, 942
BslI	CCNNNNNNNGG	2 cut(s)	678, 839
BsmAI	GTCTC	2 cut(s)	508, 901
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	2 cut(s)	164, 812
BsoBI	CYCGRG	2 cut(s)	251, 635
Bsp1286I	GDGCHC	4 cut(s)	194, 391, 469, 535
Bsp143I	GATC	5 cut(s)	301, 418, 604, 851, 864
BspACI	CCGC	4 cut(s)	8, 66, 143, 149
BspANI	GGCC	2 cut(s)	164, 812
BspCNI	CTCAG	2 cut(s)	70, 436
BspMI	ACCTGC	2 cut(s)	674, 877
BspPI	GGATC	2 cut(s)	296, 859
BsrDI	GCAATG	2 cut(s)	334, 558
BsrFI	RCCGGY	1 cut(s)	671
BsrI	ACTGG	2 cut(s)	547, 713
BssAI	RCCGGY	1 cut(s)	671
BssECI	CCNNGG	4 cut(s)	210, 251, 470, 635
BssMI	GATC	5 cut(s)	301, 418, 604, 851, 864
BssT1I	CCWWGG	1 cut(s)	470
Bst2UI	CCWGG	2 cut(s)	211, 462
Bst4CI	ACNGT	3 cut(s)	196, 205, 403
Bst6I	CTCTTC	1 cut(s)	927
BstAPI	GCANNNNNTGC	2 cut(s)	494, 569
BstBAI	YACGTR	1 cut(s)	566
BstC8I	GCNNGC	2 cut(s)	52, 70
BstDEI	CTNAG	2 cut(s)	78, 444
BstF5I	GGATG	1 cut(s)	828
BstH2I	RGCGCY	2 cut(s)	60, 478
BstHHI	GCGC	3 cut(s)	59, 477, 488
BstKTI	GATC	5 cut(s)	304, 421, 607, 854, 867
BstMAI	GTCTC	2 cut(s)	508, 901
BstMBI	GATC	5 cut(s)	301, 418, 604, 851, 864
BstMWI	GCNNNNNNNGC	8 cut(s)	56, 65, 74, 206, 483, 494, 569, 593
BstNI	CCWGG	2 cut(s)	211, 462
BstNSI	RCATGY	1 cut(s)	896
BstSCI	CCNGG	6 cut(s)	209, 250, 251, 460, 634, 635
BstSFI	CTRYAG	1 cut(s)	204
BstSLI	GKGCMC	2 cut(s)	194, 469
BstV1I	GCAGC	4 cut(s)	66, 358, 571, 739
BstX2I	RGATCY	1 cut(s)	851
BstYI	RGATCY	1 cut(s)	851
BsuRI	GGCC	2 cut(s)	164, 812
BtsCI	GGATG	1 cut(s)	828
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	4 cut(s)	102, 272, 408, 488
BveI	ACCTGC	2 cut(s)	674, 877
Cac8I	GCNNGC	2 cut(s)	52, 70
CaiI	CAGNNNCTG	1 cut(s)	271
CfoI	GCGC	3 cut(s)	59, 477, 488
Cfr10I	RCCGGY	1 cut(s)	671
Cfr13I	GGNCC	2 cut(s)	551, 803
Cfr9I	CCCGGG	2 cut(s)	251, 635
CsiI	ACCWGGT	1 cut(s)	460
Csp6I	GTAC	3 cut(s)	87, 248, 890
CspCI	CAANNNNNGTGG	2 cut(s)	384, 419
CviAII	CATG	2 cut(s)	868, 893
CviQI	GTAC	3 cut(s)	87, 248, 890
DdeI	CTNAG	2 cut(s)	78, 444
DpnI	GATC	5 cut(s)	303, 420, 606, 853, 866
DpnII	GATC	5 cut(s)	301, 418, 604, 851, 864
DraI	TTTAAA	1 cut(s)	792
DraIII	CACNNNGTG	1 cut(s)	464
DrdI	GACNNNNNNGTC	1 cut(s)	653
DseDI	GACNNNNNNGTC	1 cut(s)	653
Eam1104I	CTCTTC	1 cut(s)	927
EarI	CTCTTC	1 cut(s)	927
EciI	GGCGGA	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	470
Eco24I	GRGCYC	1 cut(s)	535
Eco47I	GGWCC	2 cut(s)	551, 803
Eco57I	CTGAAG	2 cut(s)	104, 908
Eco88I	CYCGRG	2 cut(s)	251, 635
EcoRII	CCWGG	2 cut(s)	209, 460
EcoT14I	CCWWGG	1 cut(s)	470
EcoT22I	ATGCAT	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	535
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	2 cut(s)	871, 896
FalI	AAGNNNNNCTT	4 cut(s)	102, 134, 420, 452
FatI	CATG	2 cut(s)	867, 892
FauI	CCCGC	1 cut(s)	142
FbaI	TGATCA	2 cut(s)	604, 864
Fnu4HI	GCNGC	4 cut(s)	55, 372, 585, 753
FokI	GGATG	1 cut(s)	815
FriOI	GRGCYC	1 cut(s)	535
Fsp4HI	GCNGC	4 cut(s)	55, 372, 585, 753
FspBI	CTAG	4 cut(s)	392, 593, 597, 848
GlaI	GCGC	3 cut(s)	58, 476, 487
GluI	GCNGC	4 cut(s)	55, 372, 585, 753
GsaI	CCCAGC	1 cut(s)	191
HaeII	RGCGCY	2 cut(s)	60, 478
HaeIII	GGCC	2 cut(s)	164, 812
HapII	CCGG	5 cut(s)	39, 252, 636, 672, 942
HhaI	GCGC	3 cut(s)	59, 477, 488
Hin1II	CATG	2 cut(s)	871, 896
Hin6I	GCGC	3 cut(s)	57, 475, 486
HinP1I	GCGC	3 cut(s)	57, 475, 486
HinfI	GANTC	1 cut(s)	746
HpaII	CCGG	5 cut(s)	39, 252, 636, 672, 942
HphI	GGTGA	2 cut(s)	164, 702
Hpy166II	GTNNAC	1 cut(s)	467
Hpy188III	TCNNGA	2 cut(s)	538, 732
Hpy8I	GTNNAC	1 cut(s)	467
HpyAV	CCTTC	6 cut(s)	43, 70, 212, 837, 889, 921
HpyCH4III	ACNGT	3 cut(s)	196, 205, 403
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	5 cut(s)	259, 467, 497, 563, 951
HpyF10VI	GCNNNNNNNGC	8 cut(s)	56, 65, 74, 206, 483, 494, 569, 593
HpyF3I	CTNAG	2 cut(s)	78, 444
HpySE526I	ACGT	1 cut(s)	565
Hsp92II	CATG	2 cut(s)	871, 896
HspAI	GCGC	3 cut(s)	57, 475, 486
Ksp22I	TGATCA	2 cut(s)	604, 864
Kzo9I	GATC	5 cut(s)	301, 418, 604, 851, 864
LmnI	GCTCC	1 cut(s)	129
Lsp1109I	GCAGC	4 cut(s)	66, 358, 571, 739
LweI	GCATC	1 cut(s)	268
MabI	ACCWGGT	1 cut(s)	460
MaeI	CTAG	4 cut(s)	392, 593, 597, 848
MaeII	ACGT	1 cut(s)	565
MaeIII	GTNAC	1 cut(s)	655
MalI	GATC	5 cut(s)	303, 420, 606, 853, 866
MboI	GATC	5 cut(s)	301, 418, 604, 851, 864
MboII	GAAGA	2 cut(s)	227, 914
MfeI	CAATTG	1 cut(s)	768
MflI	RGATCY	1 cut(s)	851
MhlI	GDGCHC	4 cut(s)	194, 391, 469, 535
MluCI	AATT	9 cut(s)	243, 288, 363, 452, 546, 630, 768, 835, 963
MmeI	TCCRAC	2 cut(s)	319, 437
MnlI	CCTC	4 cut(s)	439, 514, 915, 918
Mph1103I	ATGCAT	1 cut(s)	499
MseI	TTAA	7 cut(s)	309, 353, 579, 642, 726, 783, 791
MspI	CCGG	5 cut(s)	39, 252, 636, 672, 942
MspR9I	CCNGG	6 cut(s)	211, 252, 253, 462, 636, 637
MunI	CAATTG	1 cut(s)	768
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	2 cut(s)	211, 462
MwoI	GCNNNNNNNGC	8 cut(s)	56, 65, 74, 206, 483, 494, 569, 593
NciI	CCSGG	4 cut(s)	252, 253, 636, 637
NdeII	GATC	5 cut(s)	301, 418, 604, 851, 864
NlaIII	CATG	2 cut(s)	871, 896
NmuCI	GTSAC	1 cut(s)	655
NsiI	ATGCAT	1 cut(s)	499
NspI	RCATGY	1 cut(s)	896
PciI	ACATGT	1 cut(s)	892
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	1 cut(s)	746
PflMI	CCANNNNNTGG	1 cut(s)	839
PkrI	GCNGC	4 cut(s)	56, 373, 586, 754
Ppu21I	YACGTR	1 cut(s)	566
PscI	ACATGT	1 cut(s)	892
PshBI	ATTAAT	1 cut(s)	579
PsiI	TTATAA	1 cut(s)	819
Psp6I	CCWGG	2 cut(s)	209, 460
PspFI	CCCAGC	1 cut(s)	187
PspGI	CCWGG	2 cut(s)	209, 460
PspPI	GGNCC	2 cut(s)	551, 803
PstNI	CAGNNNCTG	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	851
RsaI	GTAC	3 cut(s)	88, 249, 891
RsaNI	GTAC	3 cut(s)	87, 248, 890
SaqAI	TTAA	7 cut(s)	309, 353, 579, 642, 726, 783, 791
SatI	GCNGC	4 cut(s)	55, 372, 585, 753
Sau3AI	GATC	5 cut(s)	301, 418, 604, 851, 864
Sau96I	GGNCC	2 cut(s)	551, 803
ScrFI	CCNGG	6 cut(s)	211, 252, 253, 462, 636, 637
SduI	GDGCHC	4 cut(s)	194, 391, 469, 535
SexAI	ACCWGGT	1 cut(s)	460
SfaNI	GCATC	1 cut(s)	268
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	2 cut(s)	551, 803
SmaI	CCCGGG	2 cut(s)	253, 637
Sse9I	AATT	9 cut(s)	243, 288, 363, 452, 546, 630, 768, 835, 963
SsiI	CCGC	4 cut(s)	8, 66, 143, 149
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	4 cut(s)	392, 593, 597, 848
StyD4I	CCNGG	6 cut(s)	209, 250, 251, 460, 634, 635
StyI	CCWWGG	1 cut(s)	470
TaaI	ACNGT	3 cut(s)	196, 205, 403
TaiI	ACGT	1 cut(s)	568
TaqI	TCGA	1 cut(s)	882
TasI	AATT	9 cut(s)	243, 288, 363, 452, 546, 630, 768, 835, 963
TatI	WGTACW	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	746
Tru1I	TTAA	7 cut(s)	309, 353, 579, 642, 726, 783, 791
Tru9I	TTAA	7 cut(s)	309, 353, 579, 642, 726, 783, 791
TscAI	CASTG	4 cut(s)	109, 272, 408, 495
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	4 cut(s)	54, 371, 584, 752
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	1 cut(s)	817
TspMI	CCCGGG	2 cut(s)	251, 635
TspRI	CASTG	4 cut(s)	109, 272, 408, 495
Van91I	CCANNNNNTGG	1 cut(s)	839
VneI	GTGCAC	1 cut(s)	465
VpaK11BI	GGWCC	2 cut(s)	551, 803
VspI	ATTAAT	1 cut(s)	579
XapI	RAATTY	3 cut(s)	363, 630, 835
XceI	RCATGY	1 cut(s)	896
XmaI	CCCGGG	2 cut(s)	251, 635
XspI	CTAG	4 cut(s)	392, 593, 597, 848
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.