Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007630

Physical Location & Seq

Genomic Coordinates Forward (+)

38587740 .. 38590435

Gene Structure 2696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024728

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTTTATCAACTTGGTGCAGATTTGTACTATTCCTTTGGACACTGCTAAAGTTAGGCTTCAGCTCCAAAAGAAAGGTGTTGCGGTTGCGGGTGATGTAGTGGCGTTACCTAAATACCGGGGTATGCTGGGCACGGTTGCTACTGTAGCCAGGGAAGAAGGTCTATCAGCTCTATGGAAAGGAATTGTACCCGGGTTGCATCGTCAGTGCCTGTATGGAGGTGCTCTGGCAATCACAGTGGCAAATCCAACTGATCTTGTAAAAGTTAGACTTCAAGCTGAGGGAAAATTGCCACCAGGCGCACCAAGGCGCTATTCTGGCGCATTGAATGCGTATTCCACCATCTTGAGACAGGAGGGAGTTGGGGCTCTCTGGACTGGAATTGGACCTAACATTGCACGTAATGCTATCATTAATGCTGCTGAACTAGCCAGTTATGATCAAGTGAAGCAGACACTTTTGAAAATTCCCGGGTTTAAGGACAACGTTGTCACTCATCTTTTTGCTGGTCTAGGGGCAGGTTTCTTTGCTGTCTGCATTGGCTCCCCAGTTGATGTGGTTAAGTCAAGAATGATGGGAGATTCTTCTGCTTACAAAAGCACGATCGATTGCTTCGTTAAAACTTTGAAGAATGATGGACCTTTGGCCTTTTATAAGGGCTTCATCCCAAATTTTGGGCGGCTAGGATCTTGGAATGTGATCATGTTTCTAACCTTTGAGCAGCTAGCTGAGGAGAAGAATCTTCTGAAGGAAAACTGCTTATTGGAAACTCAGAAGTTTAGAAATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

264

Amino Acids

28.49

Weight (kDa)

9.51

Isoelectric Point (pI)

28.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	7 - 74	1.1e-10	Mitochondrial carrier protein
Mito_carr	PF00153	73 - 155	1.7e-19	Mitochondrial carrier protein
Mito_carr	PF00153	161 - 243	1.3e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54110
fragaria_vesca	FvH4_6g12220 FvH4_6g12220 FvH4_6g12220 FvH4_6g12220 FvH4_6g12220
malus_domestica	MD04G1145100.v1.1
prunus_persica	Prupe.6G269400_v2.0.a1
pyrus_communis	pycom04g13130
rosa_chinensis	RchiOBHm_Chr3g0464011
rosa_laevigata	RLG00000013105 RLG00000024728 RLG00000030582
rosa_multiflora	Rmu_co8256601.1_g000001 Rmu_sc0004616.1_g000008
rosa_roxburghii	Rroxscaffold_6G00416060
rosa_rugosa	Rorug01G0017800 Rorug03G0070000 Rorug03G0070100
rosa_samantha	Rh3AG126900 Rh3BG131000 Rh3CG133400 Rh3DG132300
rosa_wichuraiana	Rw3G010720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	654
AasI	GACNNNNNNGTC	1 cut(s)	488
Acc36I	ACCTGC	1 cut(s)	509
AccB7I	CCANNNNNTGG	1 cut(s)	674
AciI	CCGC	3 cut(s)	83, 89, 679
AclI	AACGTT	1 cut(s)	486
AclWI	GGATC	1 cut(s)	694
AcsI	RAATTY	2 cut(s)	465, 670
AcuI	CTGAAG	2 cut(s)	44, 767
AfaI	GTAC	2 cut(s)	28, 189
AfiI	CCNNNNNNNGG	1 cut(s)	674
AgsI	TTSAA	4 cut(s)	275, 328, 463, 628
AjnI	CCWGG	2 cut(s)	149, 295
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
AluBI	AGCT	5 cut(s)	64, 170, 278, 724, 728
AluI	AGCT	5 cut(s)	64, 170, 278, 724, 728
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	1 cut(s)	694
AlwNI	CAGNNNCTG	1 cut(s)	211
Ama87I	CYCGRG	2 cut(s)	191, 470
AoxI	GGCC	1 cut(s)	645
ApeKI	GCWGC	2 cut(s)	419, 721
ApoI	RAATTY	2 cut(s)	465, 670
AseI	ATTAAT	1 cut(s)	414
AspLEI	GCGC	3 cut(s)	302, 312, 323
AspS9I	GGNCC	2 cut(s)	386, 638
AsuC2I	CCSGG	5 cut(s)	119, 192, 193, 471, 472
AsuHPI	GGTGA	1 cut(s)	104
AsuNHI	GCTAGC	1 cut(s)	724
AvaI	CYCGRG	2 cut(s)	191, 470
AvaII	GGWCC	2 cut(s)	386, 638
BaeGI	GKGCMC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	226
BbvCI	CCTCAGC	2 cut(s)	279, 729
BbvI	GCAGC	2 cut(s)	406, 733
BccI	CCATC	3 cut(s)	350, 568, 629
BciT130I	CCWGG	2 cut(s)	151, 297
BclI	TGATCA	2 cut(s)	439, 699
BcnI	CCSGG	5 cut(s)	119, 192, 193, 471, 472
BcoDI	GTCTC	1 cut(s)	343
BfaI	CTAG	4 cut(s)	428, 512, 683, 725
BfmI	CTRYAG	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	313
BfuAI	ACCTGC	1 cut(s)	509
BisI	GCNGC	3 cut(s)	420, 680, 722
BlsI	GCNGC	3 cut(s)	421, 681, 723
Bme1390I	CCNGG	7 cut(s)	119, 151, 192, 193, 297, 471, 472
Bme18I	GGWCC	2 cut(s)	386, 638
BmeT110I	CYCGRG	2 cut(s)	191, 470
BmgT120I	GGNCC	2 cut(s)	386, 638
BmiI	GGNNCC	1 cut(s)	544
BmrFI	CCNGG	7 cut(s)	119, 151, 192, 193, 297, 471, 472
BmrI	ACTGGG	1 cut(s)	542
BmsI	GCATC	1 cut(s)	208
BmtI	GCTAGC	1 cut(s)	728
BmuI	ACTGGG	1 cut(s)	542
Bpu10I	CCTNAGC	2 cut(s)	279, 729
BpuEI	CTTGAG	1 cut(s)	367
BpuMI	CCSGG	5 cut(s)	119, 192, 193, 471, 472
Bsa29I	ATCGAT	1 cut(s)	606
BsaAI	YACGTR	1 cut(s)	401
BsaJI	CCNNGG	5 cut(s)	118, 150, 191, 305, 470
Bsc4I	CCNNNNNNNGG	1 cut(s)	674
Bse1I	ACTGG	3 cut(s)	382, 432, 548
Bse3DI	GCAATG	1 cut(s)	393
BseBI	CCWGG	2 cut(s)	151, 297
BseCI	ATCGAT	1 cut(s)	606
BseDI	CCNNGG	5 cut(s)	118, 150, 191, 305, 470
BseGI	GGATG	1 cut(s)	663
BseLI	CCNNNNNNNGG	1 cut(s)	674
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	3 cut(s)	270, 720, 785
BseNI	ACTGG	3 cut(s)	382, 432, 548
BseRI	GAGGAG	1 cut(s)	746
BseSI	GKGCMC	1 cut(s)	134
BseXI	GCAGC	2 cut(s)	406, 733
BseYI	CCCAGC	1 cut(s)	127
BsgI	GTGCAG	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	606
BshFI	GGCC	1 cut(s)	647
BshVI	ATCGAT	1 cut(s)	606
BsiEI	CGRYCG	1 cut(s)	606
BsiHKAI	GWGCWC	1 cut(s)	226
BsiHKCI	CYCGRG	2 cut(s)	191, 470
BsiSI	CCGG	3 cut(s)	118, 192, 471
BslI	CCNNNNNNNGG	1 cut(s)	674
BsmAI	GTCTC	1 cut(s)	343
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	647
BsoBI	CYCGRG	2 cut(s)	191, 470
Bsp1286I	GDGCHC	3 cut(s)	134, 226, 370
Bsp143I	GATC	5 cut(s)	253, 439, 603, 686, 699
BspACI	CCGC	3 cut(s)	83, 89, 679
BspANI	GGCC	1 cut(s)	647
BspCNI	CTCAG	3 cut(s)	271, 721, 784
BspDI	ATCGAT	1 cut(s)	606
BspLI	GGNNCC	1 cut(s)	544
BspMI	ACCTGC	1 cut(s)	509
BspOI	GCTAGC	1 cut(s)	728
BspPI	GGATC	1 cut(s)	694
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	3 cut(s)	382, 432, 548
BssECI	CCNNGG	5 cut(s)	118, 150, 191, 305, 470
BssMI	GATC	5 cut(s)	253, 439, 603, 686, 699
BssT1I	CCWWGG	1 cut(s)	305
Bst2UI	CCWGG	2 cut(s)	151, 297
Bst4CI	ACNGT	3 cut(s)	136, 145, 238
BstAPI	GCANNNNNTGC	2 cut(s)	329, 404
BstBAI	YACGTR	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	726
BstDEI	CTNAG	3 cut(s)	279, 729, 771
BstF5I	GGATG	1 cut(s)	663
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	3 cut(s)	302, 312, 323
BstKTI	GATC	5 cut(s)	256, 442, 606, 689, 702
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	5 cut(s)	253, 439, 603, 686, 699
BstMCI	CGRYCG	1 cut(s)	606
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 318, 329, 404, 428
BstNI	CCWGG	2 cut(s)	151, 297
BstSCI	CCNGG	7 cut(s)	117, 149, 190, 191, 295, 469, 470
BstSFI	CTRYAG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	134
BstV1I	GCAGC	2 cut(s)	406, 733
BstX2I	RGATCY	1 cut(s)	686
BstYI	RGATCY	1 cut(s)	686
Bsu15I	ATCGAT	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	647
BsuTUI	ATCGAT	1 cut(s)	606
BtsCI	GGATG	1 cut(s)	663
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	3 cut(s)	42, 212, 243
BveI	ACCTGC	1 cut(s)	509
Cac8I	GCNNGC	1 cut(s)	726
CaiI	CAGNNNCTG	1 cut(s)	211
CfoI	GCGC	3 cut(s)	302, 312, 323
Cfr13I	GGNCC	2 cut(s)	386, 638
Cfr9I	CCCGGG	2 cut(s)	191, 470
ClaI	ATCGAT	1 cut(s)	606
Csp6I	GTAC	2 cut(s)	27, 188
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviAII	CATG	1 cut(s)	703
CviQI	GTAC	2 cut(s)	27, 188
DdeI	CTNAG	3 cut(s)	279, 729, 771
DpnI	GATC	5 cut(s)	255, 441, 605, 688, 701
DpnII	GATC	5 cut(s)	253, 439, 603, 686, 699
DrdI	GACNNNNNNGTC	1 cut(s)	488
DseDI	GACNNNNNNGTC	1 cut(s)	488
Eco130I	CCWWGG	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	370
Eco47I	GGWCC	2 cut(s)	386, 638
Eco57I	CTGAAG	2 cut(s)	44, 767
Eco88I	CYCGRG	2 cut(s)	191, 470
EcoRII	CCWGG	2 cut(s)	149, 295
EcoT14I	CCWWGG	1 cut(s)	305
EcoT38I	GRGCYC	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	305
FaeI	CATG	1 cut(s)	706
FaiI	YATR	6 cut(s)	125, 175, 216, 438, 654, 704
FalI	AAGNNNNNCTT	4 cut(s)	42, 74, 255, 287
FatI	CATG	1 cut(s)	702
FauI	CCCGC	1 cut(s)	82
FbaI	TGATCA	2 cut(s)	439, 699
Fnu4HI	GCNGC	3 cut(s)	420, 680, 722
FokI	GGATG	1 cut(s)	650
FriOI	GRGCYC	1 cut(s)	370
Fsp4HI	GCNGC	3 cut(s)	420, 680, 722
FspBI	CTAG	4 cut(s)	428, 512, 683, 725
GlaI	GCGC	3 cut(s)	301, 311, 322
GluI	GCNGC	3 cut(s)	420, 680, 722
GsaI	CCCAGC	1 cut(s)	131
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	1 cut(s)	647
HapII	CCGG	3 cut(s)	118, 192, 471
HhaI	GCGC	3 cut(s)	302, 312, 323
Hin1II	CATG	1 cut(s)	706
Hin6I	GCGC	3 cut(s)	300, 310, 321
HinP1I	GCGC	3 cut(s)	300, 310, 321
HinfI	GANTC	2 cut(s)	581, 739
HpaII	CCGG	3 cut(s)	118, 192, 471
HphI	GGTGA	1 cut(s)	104
Hpy188I	TCNGA	2 cut(s)	747, 774
Hpy188III	TCNNGA	3 cut(s)	346, 373, 567
HpyAV	CCTTC	2 cut(s)	152, 742
HpyCH4III	ACNGT	3 cut(s)	136, 145, 238
HpyCH4IV	ACGT	2 cut(s)	400, 486
HpyCH4V	TGCA	4 cut(s)	19, 199, 398, 537
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 318, 329, 404, 428
HpyF3I	CTNAG	3 cut(s)	279, 729, 771
HpySE526I	ACGT	2 cut(s)	400, 486
Hsp92II	CATG	1 cut(s)	706
HspAI	GCGC	3 cut(s)	300, 310, 321
Ksp22I	TGATCA	2 cut(s)	439, 699
Kzo9I	GATC	5 cut(s)	253, 439, 603, 686, 699
LmnI	GCTCC	2 cut(s)	69, 548
Lsp1109I	GCAGC	2 cut(s)	406, 733
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	4 cut(s)	428, 512, 683, 725
MaeII	ACGT	2 cut(s)	400, 486
MaeIII	GTNAC	2 cut(s)	105, 490
MalI	GATC	5 cut(s)	255, 441, 605, 688, 701
MboI	GATC	5 cut(s)	253, 439, 603, 686, 699
MboII	GAAGA	5 cut(s)	167, 576, 640, 734, 748
MflI	RGATCY	1 cut(s)	686
MhlI	GDGCHC	3 cut(s)	134, 226, 370
MluCI	AATT	6 cut(s)	183, 287, 381, 465, 670, 787
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	4 cut(s)	212, 274, 349, 724
MseI	TTAA	4 cut(s)	414, 477, 561, 618
MspI	CCGG	3 cut(s)	118, 192, 471
MspR9I	CCNGG	7 cut(s)	119, 151, 192, 193, 297, 471, 472
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	2 cut(s)	151, 297
MwoI	GCNNNNNNNGC	5 cut(s)	146, 318, 329, 404, 428
NciI	CCSGG	5 cut(s)	119, 192, 193, 471, 472
NdeII	GATC	5 cut(s)	253, 439, 603, 686, 699
NheI	GCTAGC	1 cut(s)	724
NlaIII	CATG	1 cut(s)	706
NlaIV	GGNNCC	1 cut(s)	544
NmuCI	GTSAC	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	1 cut(s)	612
PctI	GAATGC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	581, 739
PflMI	CCANNNNNTGG	1 cut(s)	674
PkrI	GCNGC	3 cut(s)	421, 681, 723
Ple19I	CGATCG	1 cut(s)	606
Ppu21I	YACGTR	1 cut(s)	401
PshBI	ATTAAT	1 cut(s)	414
PsiI	TTATAA	1 cut(s)	654
Psp1406I	AACGTT	1 cut(s)	486
Psp6I	CCWGG	2 cut(s)	149, 295
PspFI	CCCAGC	1 cut(s)	127
PspGI	CCWGG	2 cut(s)	149, 295
PspN4I	GGNNCC	1 cut(s)	544
PspPI	GGNCC	2 cut(s)	386, 638
PstNI	CAGNNNCTG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	686
PvuI	CGATCG	1 cut(s)	606
RsaI	GTAC	2 cut(s)	28, 189
RsaNI	GTAC	2 cut(s)	27, 188
SaqAI	TTAA	4 cut(s)	414, 477, 561, 618
SatI	GCNGC	3 cut(s)	420, 680, 722
Sau3AI	GATC	5 cut(s)	253, 439, 603, 686, 699
Sau96I	GGNCC	2 cut(s)	386, 638
ScrFI	CCNGG	7 cut(s)	119, 151, 192, 193, 297, 471, 472
SduI	GDGCHC	3 cut(s)	134, 226, 370
SfaNI	GCATC	1 cut(s)	208
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	2 cut(s)	386, 638
SmaI	CCCGGG	2 cut(s)	193, 472
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	6 cut(s)	183, 287, 381, 465, 670, 787
SsiI	CCGC	3 cut(s)	83, 89, 679
SspMI	CTAG	4 cut(s)	428, 512, 683, 725
StyD4I	CCNGG	7 cut(s)	117, 149, 190, 191, 295, 469, 470
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	3 cut(s)	136, 145, 238
TaiI	ACGT	2 cut(s)	403, 489
TaqI	TCGA	1 cut(s)	606
TasI	AATT	6 cut(s)	183, 287, 381, 465, 670, 787
TatI	WGTACW	1 cut(s)	26
TauI	GCSGC	1 cut(s)	682
TfiI	GAWTC	2 cut(s)	581, 739
Tru1I	TTAA	4 cut(s)	414, 477, 561, 618
Tru9I	TTAA	4 cut(s)	414, 477, 561, 618
TscAI	CASTG	3 cut(s)	49, 212, 243
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	2 cut(s)	419, 721
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	1 cut(s)	652
TspMI	CCCGGG	2 cut(s)	191, 470
TspRI	CASTG	3 cut(s)	49, 212, 243
Van91I	CCANNNNNTGG	1 cut(s)	674
VpaK11BI	GGWCC	2 cut(s)	386, 638
VspI	ATTAAT	1 cut(s)	414
XapI	RAATTY	2 cut(s)	465, 670
XmaI	CCCGGG	2 cut(s)	191, 470
XspI	CTAG	4 cut(s)	428, 512, 683, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.