Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007630

Physical Location & Seq

Genomic Coordinates Reverse (-)

5546748 .. 5548350

Gene Structure 1603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0070100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGTGAAGTGTTGCAAAATGCCAAAGGAGATGATGGTGCATGTCCTATCAAGATTGCCTCCCAAATCGCTGGTCCGATTCAAGTGCGTCCATAAATCATGGTCTGCTCTGATCAACAATTCTTCGTTTGTAGGCAAGCACCTCCAGTTGTACAACCAACTTTGCTCCTCCACTAGCATCTTTCTCAAGCGTTCTGTCAAAAGTAGAACCGGAACTAACAATGAGGAAATTCTACTTTCATTCTTTAATCTTCGCAAGGATAACGGTGACGATGATGACCTTAATCCTATTGTGGAGGACTTTCATTTGCCGCCTTCTATAGGAATACTTGGTAAAGGACCATTTATTGAGGTAGAACCTGGTGAATCTATATATATAGTAGGTCATTGTGAGGGGATCATTTGCCTTATTATTTATACCGGTGACCTTGTCTTATGCAATCCTGCAACCAAGGAATTCAAGATTCTTCCCGAGTCGTGCCTTCAAGATACGACCTCAGAGATTGTTGGATTTGGCTATGATCCCAAAGCTAATGATTTTAAAATTGTCAACATTGGATCTTGCGGTGAAGAAAGTTATGGTGAGCGTCTTGTTATTAATCCTCCTAAAGCAGAGGTATACACTCCAAGTACTGATTCTTGGAGAAACATCACCATTGATTATTTAGAAACAGAAACTACCAACTTTTGGCCTGATGTTTTCCATGAGTACTTCAAGGGAATTTGTTATTGGTTAGGACATGAGCAAAATAAGGAATTCATCGACACAATTGAACAGGAAATCATTAGGCAAGTGATCGTTTCGTTTGATATGAGTAATGAAAGGTTTCATATTATATTGCTGCCAGATAGATTTTATATACCATCAGTGCTTATTAAGCGTGATTTGCACATTGCAGTTTGGAATGAATCCATTGTTCTTTTTATCTTTCAATTTTATGGTTCGAGTTATGAAGAGTATTCATTTGATATATGGGTGAAGGATGAGTATGGTGATACTCGCGGTTCTTGGACAAAACACATAACCATTGAGCCTATAGTGGGCCTTGCATTGCCATTGACATTCTGGAAGAGCGATGAGTTTATTATGGTTGCCCCAGATGGACATATAGTCTCCTACAATCTTCATAGTTCATACCCAAAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

382

Amino Acids

43.93

Weight (kDa)

5.21

Isoelectric Point (pI)

44.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	6 - 43	2.6e-08	F-box domain
F-box-like	PF12937	6 - 42	4.4e-07	F-box-like
FBA_1	PF07734	105 - 354	1.1e-25	F-box associated beta propeller domain
FBA_3	PF08268	125 - 345	2e-16	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54110
fragaria_vesca	FvH4_6g12220 FvH4_6g12220 FvH4_6g12220 FvH4_6g12220 FvH4_6g12220
malus_domestica	MD04G1145100.v1.1
prunus_persica	Prupe.6G269400_v2.0.a1
pyrus_communis	pycom04g13130
rosa_chinensis	RchiOBHm_Chr3g0464011
rosa_laevigata	RLG00000013105 RLG00000024728 RLG00000030582
rosa_multiflora	Rmu_co8256601.1_g000001 Rmu_sc0004616.1_g000008
rosa_roxburghii	Rroxscaffold_6G00416060
rosa_rugosa	Rorug01G0017800 Rorug03G0070000 Rorug03G0070100
rosa_samantha	Rh3AG126900 Rh3BG131000 Rh3CG133400 Rh3DG132300
rosa_wichuraiana	Rw3G010720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	687
AccI	GTMKAC	1 cut(s)	618
AccII	CGCG	1 cut(s)	1002
AciI	CCGC	3 cut(s)	311, 564, 1002
AclWI	GGATC	3 cut(s)	404, 515, 565
AcsI	RAATTY	4 cut(s)	228, 455, 720, 755
AfaI	GTAC	3 cut(s)	152, 631, 710
AfiI	CCNNNNNNNGG	3 cut(s)	320, 687, 1040
AgeI	ACCGGT	1 cut(s)	419
AgsI	TTSAA	6 cut(s)	82, 460, 485, 715, 773, 932
AhdI	GACNNNNNGTC	1 cut(s)	1109
AjnI	CCWGG	1 cut(s)	358
AjuI	GAANNNNNNNTTGG	4 cut(s)	619, 651, 712, 744
AluBI	AGCT	1 cut(s)	530
AluI	AGCT	1 cut(s)	530
Alw26I	GTCTC	1 cut(s)	1117
AlwI	GGATC	3 cut(s)	404, 515, 565
Ama87I	CYCGRG	1 cut(s)	470
AoxI	GGCC	2 cut(s)	689, 1042
ApeKI	GCWGC	1 cut(s)	841
ApoI	RAATTY	4 cut(s)	228, 455, 720, 755
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
AseI	ATTAAT	1 cut(s)	597
AsiGI	ACCGGT	1 cut(s)	419
Asp700I	GAANNNNTTC	1 cut(s)	825
AspS9I	GGNCC	3 cut(s)	73, 338, 1042
AsuHPI	GGTGA	9 cut(s)	16, 278, 374, 434, 578, 593, 643, 988, 1004
AvaI	CYCGRG	1 cut(s)	470
AvaII	GGWCC	2 cut(s)	73, 338
BbvI	GCAGC	1 cut(s)	828
BccI	CCATC	3 cut(s)	28, 871, 1094
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BciT130I	CCWGG	1 cut(s)	360
BclI	TGATCA	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	1117
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	2 cut(s)	318, 1035
BisI	GCNGC	2 cut(s)	311, 842
BlsI	GCNGC	2 cut(s)	312, 843
BmcAI	AGTACT	2 cut(s)	631, 710
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	2 cut(s)	73, 338
BmeRI	GACNNNNNGTC	1 cut(s)	1109
BmeT110I	CYCGRG	1 cut(s)	470
BmgT120I	GGNCC	3 cut(s)	73, 338, 1042
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	450
BsaWI	WCCGGW	2 cut(s)	209, 419
Bsc4I	CCNNNNNNNGG	3 cut(s)	320, 687, 1040
Bse118I	RCCGGY	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	145
Bse3DI	GCAATG	2 cut(s)	891, 1049
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	450
BseGI	GGATG	1 cut(s)	988
BseLI	CCNNNNNNNGG	3 cut(s)	320, 687, 1040
BseMI	GCAATG	2 cut(s)	891, 1049
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	828
Bsh1236I	CGCG	1 cut(s)	1002
BshFI	GGCC	2 cut(s)	691, 1044
BshTI	ACCGGT	1 cut(s)	419
BsiHKCI	CYCGRG	1 cut(s)	470
BsiSI	CCGG	2 cut(s)	210, 420
BslI	CCNNNNNNNGG	3 cut(s)	320, 687, 1040
BsmAI	GTCTC	1 cut(s)	1117
BsnI	GGCC	2 cut(s)	691, 1044
BsoBI	CYCGRG	1 cut(s)	470
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	5 cut(s)	111, 396, 520, 557, 795
BspACI	CCGC	3 cut(s)	311, 564, 1002
BspANI	GGCC	2 cut(s)	691, 1044
BspCNI	CTCAG	1 cut(s)	509
BspFNI	CGCG	1 cut(s)	1002
BspPI	GGATC	3 cut(s)	404, 515, 565
BspQI	GCTCTTC	1 cut(s)	1064
BsrDI	GCAATG	2 cut(s)	891, 1049
BsrFI	RCCGGY	1 cut(s)	419
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	145
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	1 cut(s)	450
BssMI	GATC	5 cut(s)	111, 396, 520, 557, 795
BssNAI	GTATAC	1 cut(s)	619
BssT1I	CCWWGG	1 cut(s)	450
Bst1107I	GTATAC	1 cut(s)	619
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	2 cut(s)	948, 1064
BstAUI	TGTACA	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	1 cut(s)	496
BstEII	GGTNACC	1 cut(s)	422
BstENI	CCTNNNNNAGG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	988
BstFNI	CGCG	1 cut(s)	1002
BstKTI	GATC	5 cut(s)	114, 399, 523, 560, 798
BstMAI	GTCTC	1 cut(s)	1117
BstMBI	GATC	5 cut(s)	111, 396, 520, 557, 795
BstMWI	GCNNNNNNNGC	2 cut(s)	877, 886
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	1 cut(s)	44
BstPI	GGTNACC	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	2 cut(s)	318, 1035
BstUI	CGCG	1 cut(s)	1002
BstV1I	GCAGC	1 cut(s)	828
BstX2I	RGATCY	1 cut(s)	557
BstXI	CCANNNNNNTGG	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	557
BstZ17I	GTATAC	1 cut(s)	619
BsuRI	GGCC	2 cut(s)	691, 1044
BtgZI	GCGATG	1 cut(s)	1089
BtsCI	GGATG	1 cut(s)	988
BtsIMutI	CAGTG	1 cut(s)	873
Cac8I	GCNNGC	1 cut(s)	137
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	3 cut(s)	73, 338, 1042
CseI	GACGC	2 cut(s)	76, 575
CsiI	ACCWGGT	1 cut(s)	358
Csp6I	GTAC	3 cut(s)	151, 630, 709
CspAI	ACCGGT	1 cut(s)	419
CviAII	CATG	4 cut(s)	41, 99, 704, 740
CviJI	RGCY	5 cut(s)	516, 530, 691, 1033, 1044
CviKI_1	RGCY	5 cut(s)	516, 530, 691, 1033, 1044
CviQI	GTAC	3 cut(s)	151, 630, 709
DdeI	CTNAG	1 cut(s)	496
DpnI	GATC	5 cut(s)	113, 398, 522, 559, 797
DpnII	GATC	5 cut(s)	111, 396, 520, 557, 795
DraI	TTTAAA	1 cut(s)	541
DriI	GACNNNNNGTC	1 cut(s)	1109
Eam1104I	CTCTTC	2 cut(s)	948, 1064
Eam1105I	GACNNNNNGTC	1 cut(s)	1109
EarI	CTCTTC	2 cut(s)	948, 1064
Eco130I	CCWWGG	1 cut(s)	450
Eco47I	GGWCC	2 cut(s)	73, 338
Eco88I	CYCGRG	1 cut(s)	470
Eco91I	GGTNACC	1 cut(s)	422
EcoNI	CCTNNNNNAGG	1 cut(s)	318
EcoO65I	GGTNACC	1 cut(s)	422
EcoRI	GAATTC	2 cut(s)	455, 755
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	450
FaeI	CATG	4 cut(s)	44, 102, 707, 743
FatI	CATG	4 cut(s)	40, 98, 703, 739
FbaI	TGATCA	1 cut(s)	111
FblI	GTMKAC	1 cut(s)	618
Fnu4HI	GCNGC	2 cut(s)	311, 842
FokI	GGATG	1 cut(s)	995
Fsp4HI	GCNGC	2 cut(s)	311, 842
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	2 cut(s)	311, 842
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	691, 1044
HapII	CCGG	2 cut(s)	210, 420
HgaI	GACGC	2 cut(s)	76, 575
Hin1II	CATG	4 cut(s)	44, 102, 707, 743
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HinfI	GANTC	6 cut(s)	78, 365, 463, 473, 635, 908
HpaII	CCGG	2 cut(s)	210, 420
HphI	GGTGA	9 cut(s)	16, 278, 374, 434, 578, 593, 643, 988, 1004
Hpy166II	GTNNAC	2 cut(s)	550, 619
Hpy188I	TCNGA	3 cut(s)	77, 111, 499
Hpy188III	TCNNGA	5 cut(s)	51, 460, 470, 485, 1066
Hpy8I	GTNNAC	2 cut(s)	550, 619
HpyAV	CCTTC	3 cut(s)	324, 491, 973
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	7 cut(s)	15, 40, 438, 446, 889, 896, 1049
HpyF10VI	GCNNNNNNNGC	2 cut(s)	877, 886
HpyF3I	CTNAG	1 cut(s)	496
Hsp92II	CATG	4 cut(s)	44, 102, 707, 743
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	5 cut(s)	111, 396, 520, 557, 795
LguI	GCTCTTC	1 cut(s)	1064
LmnI	GCTCC	1 cut(s)	170
Lsp1109I	GCAGC	1 cut(s)	828
LweI	GCATC	1 cut(s)	186
MabI	ACCWGGT	1 cut(s)	358
MaeI	CTAG	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	266, 422
MalI	GATC	5 cut(s)	113, 398, 522, 559, 797
MboI	GATC	5 cut(s)	111, 396, 520, 557, 795
MboII	GAAGA	7 cut(s)	114, 242, 458, 581, 965, 1081, 1115
MfeI	CAATTG	1 cut(s)	768
MflI	RGATCY	1 cut(s)	557
MluCI	AATT	8 cut(s)	118, 228, 455, 543, 720, 755, 768, 932
MlyI	GAGTC	1 cut(s)	482
MmeI	TCCRAC	1 cut(s)	487
MroXI	GAANNNNTTC	1 cut(s)	825
MseI	TTAA	5 cut(s)	246, 282, 540, 597, 876
MspI	CCGG	2 cut(s)	210, 420
MspR9I	CCNGG	1 cut(s)	360
MunI	CAATTG	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	360
MvnI	CGCG	1 cut(s)	1002
MwoI	GCNNNNNNNGC	2 cut(s)	877, 886
NdeII	GATC	5 cut(s)	111, 396, 520, 557, 795
NlaIII	CATG	4 cut(s)	44, 102, 707, 743
NmuCI	GTSAC	2 cut(s)	266, 422
NspI	RCATGY	1 cut(s)	44
PciSI	GCTCTTC	1 cut(s)	1064
PdmI	GAANNNNTTC	1 cut(s)	825
PfeI	GAWTC	5 cut(s)	78, 365, 463, 635, 908
PflFI	GACNNNGTC	1 cut(s)	428
PflMI	CCANNNNNTGG	1 cut(s)	687
PinAI	ACCGGT	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	312, 843
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
PshBI	ATTAAT	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	358
PspEI	GGTNACC	1 cut(s)	422
PspGI	CCWGG	1 cut(s)	358
PspPI	GGNCC	3 cut(s)	73, 338, 1042
PsuI	RGATCY	1 cut(s)	557
PsyI	GACNNNGTC	1 cut(s)	428
RsaI	GTAC	3 cut(s)	152, 631, 710
RsaNI	GTAC	3 cut(s)	151, 630, 709
SapI	GCTCTTC	1 cut(s)	1064
SaqAI	TTAA	5 cut(s)	246, 282, 540, 597, 876
SatI	GCNGC	2 cut(s)	311, 842
Sau3AI	GATC	5 cut(s)	111, 396, 520, 557, 795
Sau96I	GGNCC	3 cut(s)	73, 338, 1042
ScaI	AGTACT	2 cut(s)	631, 710
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	360
SexAI	ACCWGGT	1 cut(s)	358
SfaNI	GCATC	1 cut(s)	186
SfcI	CTRYAG	2 cut(s)	318, 1035
SinI	GGWCC	2 cut(s)	73, 338
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	8 cut(s)	118, 228, 455, 543, 720, 755, 768, 932
SsiI	CCGC	3 cut(s)	311, 564, 1002
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	1 cut(s)	266
TaqI	TCGA	2 cut(s)	762, 944
TasI	AATT	8 cut(s)	118, 228, 455, 543, 720, 755, 768, 932
TatI	WGTACW	3 cut(s)	150, 629, 708
TauI	GCSGC	1 cut(s)	313
TfiI	GAWTC	5 cut(s)	78, 365, 463, 635, 908
Tru1I	TTAA	5 cut(s)	246, 282, 540, 597, 876
Tru9I	TTAA	5 cut(s)	246, 282, 540, 597, 876
TscAI	CASTG	1 cut(s)	873
TseFI	GTSAC	2 cut(s)	266, 422
TseI	GCWGC	1 cut(s)	841
Tsp45I	GTSAC	2 cut(s)	266, 422
TspRI	CASTG	1 cut(s)	873
Tth111I	GACNNNGTC	1 cut(s)	428
Van91I	CCANNNNNTGG	1 cut(s)	687
VpaK11BI	GGWCC	2 cut(s)	73, 338
VspI	ATTAAT	1 cut(s)	597
XagI	CCTNNNNNAGG	1 cut(s)	318
XapI	RAATTY	4 cut(s)	228, 455, 720, 755
XceI	RCATGY	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1062
XmiI	GTMKAC	1 cut(s)	618
XmnI	GAANNNNTTC	1 cut(s)	825
XspI	CTAG	1 cut(s)	174
ZrmI	AGTACT	2 cut(s)	631, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.