Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007630

Physical Location & Seq

Genomic Coordinates Reverse (-)

10926481 .. 10929417

Gene Structure 2937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG133400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGTGGCGGATAACAAGAAACCCGACATTTCCTTCGCCGGAACTTTTGCCAGCAGCGCCTTCTCCGCTTGCTTTGCTGAGATTTGTACTATTCCTTTGGACACTGCTAAAGTTAGGCTTCAGCTCCAAAAGAAAGGTGTTGCGGTTGCGGGTGATGTAGTGGCCTTACCTAAATACAGGGGTATGCTGGGCACGGTTGCTACTGTAGCCAGGGAAGAAGGTCTATCAGCTCTTTGGAAAGGAATTGTACCCGGGTTGCATCGTCAGTGCCTGTATGGTGGTTTGAGAATTGGGTTGTATGATCCTGGACCTTTGGCCTTTTATAAGGGCTTCATCCCAAATTTTGGAAGGCTAGGATCTTGGAATGTGATCATGTTTCTAACCTTCGAGCAGGCTAAGAAGTTCGTGAAAAGTATAGAGTCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

142

Amino Acids

15.39

Weight (kDa)

9.6

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	10 - 101	1.1e-17	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54110
fragaria_vesca	FvH4_6g12220 FvH4_6g12220 FvH4_6g12220 FvH4_6g12220 FvH4_6g12220
malus_domestica	MD04G1145100.v1.1
prunus_persica	Prupe.6G269400_v2.0.a1
pyrus_communis	pycom04g13130
rosa_chinensis	RchiOBHm_Chr3g0464011
rosa_laevigata	RLG00000013105 RLG00000024728 RLG00000030582
rosa_multiflora	Rmu_co8256601.1_g000001 Rmu_sc0004616.1_g000008
rosa_roxburghii	Rroxscaffold_6G00416060
rosa_rugosa	Rorug01G0017800 Rorug03G0070000 Rorug03G0070100
rosa_samantha	Rh3AG126900 Rh3BG131000 Rh3CG133400 Rh3DG132300
rosa_wichuraiana	Rw3G010720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	324
AccB7I	CCANNNNNTGG	1 cut(s)	344
AciI	CCGC	4 cut(s)	8, 66, 143, 149
AclWI	GGATC	2 cut(s)	296, 364
AcsI	RAATTY	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	2 cut(s)	88, 249
AfiI	CCNNNNNNNGG	1 cut(s)	344
AjnI	CCWGG	2 cut(s)	209, 304
AluBI	AGCT	2 cut(s)	124, 230
AluI	AGCT	2 cut(s)	124, 230
AlwI	GGATC	2 cut(s)	296, 364
AlwNI	CAGNNNCTG	1 cut(s)	271
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	2 cut(s)	162, 315
ApeKI	GCWGC	1 cut(s)	54
ApoI	RAATTY	1 cut(s)	340
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	308
AsuC2I	CCSGG	2 cut(s)	252, 253
AsuHPI	GGTGA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	308
BaeGI	GKGCMC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	66
BciT130I	CCWGG	2 cut(s)	211, 306
BclI	TGATCA	1 cut(s)	369
BcnI	CCSGG	2 cut(s)	252, 253
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	1 cut(s)	204
BfoI	RGCGCY	1 cut(s)	60
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
Bme1390I	CCNGG	4 cut(s)	211, 252, 253, 306
Bme18I	GGWCC	1 cut(s)	308
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	308
BmrFI	CCNGG	4 cut(s)	211, 252, 253, 306
BmsI	GCATC	1 cut(s)	268
BpuMI	CCSGG	2 cut(s)	252, 253
BsaJI	CCNNGG	2 cut(s)	210, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
BseBI	CCWGG	2 cut(s)	211, 306
BseDI	CCNNGG	2 cut(s)	210, 251
BseGI	GGATG	1 cut(s)	333
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMII	CTCAG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	66
BseYI	CCCAGC	1 cut(s)	187
BshFI	GGCC	2 cut(s)	164, 317
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	2 cut(s)	39, 252
BslI	CCNNNNNNNGG	1 cut(s)	344
BsnI	GGCC	2 cut(s)	164, 317
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp143I	GATC	3 cut(s)	301, 356, 369
BspACI	CCGC	4 cut(s)	8, 66, 143, 149
BspANI	GGCC	2 cut(s)	164, 317
BspCNI	CTCAG	1 cut(s)	70
BspPI	GGATC	2 cut(s)	296, 364
BssECI	CCNNGG	2 cut(s)	210, 251
BssMI	GATC	3 cut(s)	301, 356, 369
Bst2UI	CCWGG	2 cut(s)	211, 306
Bst4CI	ACNGT	2 cut(s)	196, 205
BstC8I	GCNNGC	3 cut(s)	52, 70, 393
BstDEI	CTNAG	2 cut(s)	78, 396
BstF5I	GGATG	1 cut(s)	333
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	3 cut(s)	304, 359, 372
BstMBI	GATC	3 cut(s)	301, 356, 369
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 65, 74, 206
BstNI	CCWGG	2 cut(s)	211, 306
BstSCI	CCNGG	4 cut(s)	209, 250, 251, 304
BstSFI	CTRYAG	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
BsuRI	GGCC	2 cut(s)	164, 317
BtsCI	GGATG	1 cut(s)	333
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	2 cut(s)	102, 272
Cac8I	GCNNGC	3 cut(s)	52, 70, 393
CaiI	CAGNNNCTG	1 cut(s)	271
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	308
Cfr9I	CCCGGG	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	87, 248
CviAII	CATG	1 cut(s)	373
CviJI	RGCY	9 cut(s)	118, 124, 164, 209, 230, 317, 330, 352, 395
CviKI_1	RGCY	9 cut(s)	118, 124, 164, 209, 230, 317, 330, 352, 395
CviQI	GTAC	2 cut(s)	87, 248
DdeI	CTNAG	2 cut(s)	78, 396
DpnI	GATC	3 cut(s)	303, 358, 371
DpnII	GATC	3 cut(s)	301, 356, 369
EciI	GGCGGA	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	209, 304
FaeI	CATG	1 cut(s)	376
FaiI	YATR	6 cut(s)	185, 276, 300, 324, 374, 416
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FatI	CATG	1 cut(s)	372
FauI	CCCGC	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	1 cut(s)	55
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	1 cut(s)	353
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	55
GsaI	CCCAGC	1 cut(s)	191
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	164, 317
HapII	CCGG	2 cut(s)	39, 252
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	376
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HinfI	GANTC	1 cut(s)	419
HpaII	CCGG	2 cut(s)	39, 252
HphI	GGTGA	1 cut(s)	164
Hpy188III	TCNNGA	1 cut(s)	406
HpyAV	CCTTC	5 cut(s)	43, 70, 212, 342, 394
HpyCH4III	ACNGT	2 cut(s)	196, 205
HpyCH4V	TGCA	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 65, 74, 206
HpyF3I	CTNAG	2 cut(s)	78, 396
Hsp92II	CATG	1 cut(s)	376
HspAI	GCGC	1 cut(s)	57
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	3 cut(s)	301, 356, 369
LmnI	GCTCC	1 cut(s)	129
Lsp1109I	GCAGC	1 cut(s)	66
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	1 cut(s)	353
MalI	GATC	3 cut(s)	303, 358, 371
MboI	GATC	3 cut(s)	301, 356, 369
MboII	GAAGA	1 cut(s)	227
MflI	RGATCY	1 cut(s)	356
MhlI	GDGCHC	1 cut(s)	194
MluCI	AATT	3 cut(s)	243, 288, 340
MlyI	GAGTC	1 cut(s)	428
MspI	CCGG	2 cut(s)	39, 252
MspR9I	CCNGG	4 cut(s)	211, 252, 253, 306
MvaI	CCWGG	2 cut(s)	211, 306
MwoI	GCNNNNNNNGC	4 cut(s)	56, 65, 74, 206
NciI	CCSGG	2 cut(s)	252, 253
NdeII	GATC	3 cut(s)	301, 356, 369
NlaIII	CATG	1 cut(s)	376
PflMI	CCANNNNNTGG	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	304
PkrI	GCNGC	1 cut(s)	56
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PsiI	TTATAA	1 cut(s)	324
Psp6I	CCWGG	2 cut(s)	209, 304
PspFI	CCCAGC	1 cut(s)	187
PspGI	CCWGG	2 cut(s)	209, 304
PspPI	GGNCC	1 cut(s)	308
PstNI	CAGNNNCTG	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	356
RsaI	GTAC	2 cut(s)	88, 249
RsaNI	GTAC	2 cut(s)	87, 248
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	3 cut(s)	301, 356, 369
Sau96I	GGNCC	1 cut(s)	308
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	4 cut(s)	211, 252, 253, 306
SduI	GDGCHC	1 cut(s)	194
SetI	ASST	7 cut(s)	126, 139, 172, 223, 232, 313, 386
SfaNI	GCATC	1 cut(s)	268
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	308
SmaI	CCCGGG	1 cut(s)	253
Sse9I	AATT	3 cut(s)	243, 288, 340
SsiI	CCGC	4 cut(s)	8, 66, 143, 149
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	4 cut(s)	209, 250, 251, 304
TaaI	ACNGT	2 cut(s)	196, 205
TaqI	TCGA	1 cut(s)	387
TasI	AATT	3 cut(s)	243, 288, 340
TatI	WGTACW	1 cut(s)	86
TscAI	CASTG	2 cut(s)	109, 272
TseI	GCWGC	1 cut(s)	54
TspDTI	ATGAA	1 cut(s)	322
TspMI	CCCGGG	1 cut(s)	251
TspRI	CASTG	2 cut(s)	109, 272
Van91I	CCANNNNNTGG	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	308
XapI	RAATTY	1 cut(s)	340
XmaI	CCCGGG	1 cut(s)	251
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.