Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007630

Physical Location & Seq

Genomic Coordinates Reverse (-)

7376576 .. 7383564

Gene Structure 6989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g12220.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGTGGCCGATAACAAGAAATCCGACATTTCCTTCGCCGGAACTTTTGCCAGCAGCGCCTTCTCCGCTTGCTTTGCTGAGATTTGTACTATTCCGTTGGACACTGCTAAAGTCAGGCTTCAGCTCCAAAAGAAAGGTGTTGCGGCGGCGGGTGATGCAGCGGCCTTACCTAAATACAGGGGCATGCTGGGGACGGTTGCTACTGTGGCTCGGGAAGAAGGTCTATCAGCATTATGGAAAGGAATTGTACCCGGGTTGCATCGTCAGTGCCTGTATGGTGGTTTGAGAATTGGGTTGTATGAGCCAATTAAGACCTTATATGTGGGTGATGACTTTGTTGGAGATGTTCCTCTAACAAAGAAAATTCTCGCTGCCTTGACAACAGGTGCTCTAGCAATCACAGTGGCAAACCCAACTGATCTGGTAAAAGTTAGACTTCAAGCTGAGGGACGATTGCCACCAGGTGTTCCTAAGCGTTATTCTGGCGCACTAAACGCGTATTCCACCATCTTGAGACAGGAGGGAGTTGGGGCTCTCTGGACTGGAATTGGACCTAACATTGCACGTAATGCTATCATTAATGCTGCTGAACTAGCCAGTTATGATCAAGTGAAGCAAACACTTTTGAAAATTCCTGGGTTTAAGGACAATATTGTCACTCATCTTTTTGCCGGTCTGGGAGCTGGTTTCTTTGCCGTCTGCATTGGCTCACCAGTTGATGTGGTTAAGTCAAGAATGATGGGAGATTCTTCTGCTTACAAAAGCACGATTGATTGCTTCGTTAAAACTTTGAAGAATGATATTTGTTGTTTTGCAGGGACCTTTGGCCTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

279

Amino Acids

29.32

Weight (kDa)

9.2

Isoelectric Point (pI)

30.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	10 - 109	1.5e-19	Mitochondrial carrier protein
Mito_carr	PF00153	116 - 210	6.5e-22	Mitochondrial carrier protein
Mito_carr	PF00153	216 - 302	5.1e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54110
fragaria_vesca	FvH4_6g12220 FvH4_6g12220 FvH4_6g12220 FvH4_6g12220 FvH4_6g12220
malus_domestica	MD04G1145100.v1.1
prunus_persica	Prupe.6G269400_v2.0.a1
pyrus_communis	pycom04g13130
rosa_chinensis	RchiOBHm_Chr3g0464011
rosa_laevigata	RLG00000013105 RLG00000024728 RLG00000030582
rosa_multiflora	Rmu_co8256601.1_g000001 Rmu_sc0004616.1_g000008
rosa_roxburghii	Rroxscaffold_6G00416060
rosa_rugosa	Rorug01G0017800 Rorug03G0070000 Rorug03G0070100
rosa_samantha	Rh3AG126900 Rh3BG131000 Rh3CG133400 Rh3DG132300
rosa_wichuraiana	Rw3G010720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	653
AccII	CGCG	1 cut(s)	497
AciI	CCGC	5 cut(s)	66, 143, 146, 149, 161
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	2 cut(s)	363, 630
AcuI	CTGAAG	1 cut(s)	104
AdeI	CACNNNGTG	1 cut(s)	464
AfaI	GTAC	2 cut(s)	88, 249
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	3 cut(s)	440, 628, 793
AjnI	CCWGG	2 cut(s)	460, 634
AluBI	AGCT	3 cut(s)	124, 443, 683
AluI	AGCT	3 cut(s)	124, 443, 683
Alw21I	GWGCWC	1 cut(s)	391
Alw26I	GTCTC	1 cut(s)	508
AlwNI	CAGNNNCTG	1 cut(s)	271
Ama87I	CYCGRG	2 cut(s)	210, 251
AoxI	GGCC	3 cut(s)	6, 162, 826
ApeKI	GCWGC	4 cut(s)	54, 158, 371, 584
ApoI	RAATTY	2 cut(s)	363, 630
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AseI	ATTAAT	1 cut(s)	579
AspLEI	GCGC	2 cut(s)	59, 488
AspS9I	GGNCC	2 cut(s)	551, 819
AsuC2I	CCSGG	2 cut(s)	252, 253
AsuHPI	GGTGA	3 cut(s)	164, 338, 702
AvaI	CYCGRG	2 cut(s)	210, 251
AvaII	GGWCC	2 cut(s)	551, 819
BanII	GRGCYC	1 cut(s)	535
Bbv12I	GWGCWC	1 cut(s)	391
BbvCI	CCTCAGC	1 cut(s)	444
BbvI	GCAGC	4 cut(s)	66, 170, 358, 571
BccI	CCATC	2 cut(s)	515, 733
BceAI	ACGGC	1 cut(s)	680
BciT130I	CCWGG	2 cut(s)	462, 636
BclI	TGATCA	1 cut(s)	604
BcnI	CCSGG	2 cut(s)	252, 253
BcoDI	GTCTC	1 cut(s)	508
BfaI	CTAG	2 cut(s)	392, 593
BfoI	RGCGCY	1 cut(s)	60
BisI	GCNGC	7 cut(s)	55, 144, 147, 159, 162, 372, 585
BlsI	GCNGC	7 cut(s)	56, 145, 148, 160, 163, 373, 586
Bme1390I	CCNGG	4 cut(s)	252, 253, 462, 636
Bme18I	GGWCC	2 cut(s)	551, 819
BmeT110I	CYCGRG	2 cut(s)	210, 251
BmgT120I	GGNCC	2 cut(s)	551, 819
BmiI	GGNNCC	1 cut(s)	820
BmrFI	CCNGG	4 cut(s)	252, 253, 462, 636
BmsI	GCATC	2 cut(s)	145, 268
Bpu10I	CCTNAGC	2 cut(s)	444, 471
BpuEI	CTTGAG	1 cut(s)	532
BpuMI	CCSGG	2 cut(s)	252, 253
BsaAI	YACGTR	1 cut(s)	566
BsaJI	CCNNGG	2 cut(s)	251, 635
Bse118I	RCCGGY	1 cut(s)	671
Bse1I	ACTGG	3 cut(s)	547, 597, 713
Bse3DI	GCAATG	1 cut(s)	558
BseBI	CCWGG	2 cut(s)	462, 636
BseDI	CCNNGG	2 cut(s)	251, 635
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	2 cut(s)	69, 435
BseNI	ACTGG	3 cut(s)	547, 597, 713
BseXI	GCAGC	4 cut(s)	66, 170, 358, 571
BseYI	CCCAGC	1 cut(s)	187
Bsh1236I	CGCG	1 cut(s)	497
BshFI	GGCC	3 cut(s)	8, 164, 828
BsiHKAI	GWGCWC	1 cut(s)	391
BsiHKCI	CYCGRG	2 cut(s)	210, 251
BsiSI	CCGG	3 cut(s)	39, 252, 672
BslFI	GGGAC	3 cut(s)	205, 462, 832
BsmAI	GTCTC	1 cut(s)	508
BsmFI	GGGAC	3 cut(s)	205, 462, 832
BsnI	GGCC	3 cut(s)	8, 164, 828
BsoBI	CYCGRG	2 cut(s)	210, 251
Bsp1286I	GDGCHC	2 cut(s)	391, 535
Bsp143I	GATC	2 cut(s)	418, 604
BspACI	CCGC	5 cut(s)	66, 143, 146, 149, 161
BspANI	GGCC	3 cut(s)	8, 164, 828
BspCNI	CTCAG	2 cut(s)	70, 436
BspFNI	CGCG	1 cut(s)	497
BspLI	GGNNCC	1 cut(s)	820
BsrDI	GCAATG	1 cut(s)	558
BsrFI	RCCGGY	1 cut(s)	671
BsrI	ACTGG	3 cut(s)	547, 597, 713
BssAI	RCCGGY	1 cut(s)	671
BssECI	CCNNGG	2 cut(s)	251, 635
BssMI	GATC	2 cut(s)	418, 604
Bst2UI	CCWGG	2 cut(s)	462, 636
Bst4CI	ACNGT	3 cut(s)	196, 205, 403
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstBAI	YACGTR	1 cut(s)	566
BstC8I	GCNNGC	3 cut(s)	52, 70, 185
BstDEI	CTNAG	3 cut(s)	78, 444, 471
BstFNI	CGCG	1 cut(s)	497
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	59, 488
BstKTI	GATC	2 cut(s)	421, 607
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	2 cut(s)	418, 604
BstMWI	GCNNNNNNNGC	8 cut(s)	56, 65, 74, 155, 206, 494, 569, 593
BstNI	CCWGG	2 cut(s)	462, 636
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	4 cut(s)	250, 251, 460, 634
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	4 cut(s)	66, 170, 358, 571
BsuRI	GGCC	3 cut(s)	8, 164, 828
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	3 cut(s)	102, 272, 408
Cac8I	GCNNGC	3 cut(s)	52, 70, 185
CaiI	CAGNNNCTG	1 cut(s)	271
CfoI	GCGC	2 cut(s)	59, 488
Cfr10I	RCCGGY	1 cut(s)	671
Cfr13I	GGNCC	2 cut(s)	551, 819
Cfr9I	CCCGGG	1 cut(s)	251
CsiI	ACCWGGT	1 cut(s)	460
Csp6I	GTAC	2 cut(s)	87, 248
CspCI	CAANNNNNGTGG	2 cut(s)	384, 419
CviAII	CATG	1 cut(s)	184
CviQI	GTAC	2 cut(s)	87, 248
DdeI	CTNAG	3 cut(s)	78, 444, 471
DpnI	GATC	2 cut(s)	420, 606
DpnII	GATC	2 cut(s)	418, 604
DraIII	CACNNNGTG	1 cut(s)	464
DrdI	GACNNNNNNGTC	1 cut(s)	653
DseDI	GACNNNNNNGTC	1 cut(s)	653
EaeI	YGGCCR	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	535
Eco47I	GGWCC	2 cut(s)	551, 819
Eco57I	CTGAAG	1 cut(s)	104
Eco88I	CYCGRG	2 cut(s)	210, 251
EcoO109I	RGGNCCY	1 cut(s)	819
EcoRII	CCWGG	2 cut(s)	460, 634
EcoT38I	GRGCYC	1 cut(s)	535
FaeI	CATG	1 cut(s)	187
FaiI	YATR	8 cut(s)	185, 235, 276, 300, 319, 321, 603, 835
FalI	AAGNNNNNCTT	4 cut(s)	102, 134, 420, 452
FaqI	GGGAC	3 cut(s)	205, 462, 832
FatI	CATG	1 cut(s)	183
FauI	CCCGC	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	7 cut(s)	55, 144, 147, 159, 162, 372, 585
FriOI	GRGCYC	1 cut(s)	535
Fsp4HI	GCNGC	7 cut(s)	55, 144, 147, 159, 162, 372, 585
FspBI	CTAG	2 cut(s)	392, 593
GlaI	GCGC	2 cut(s)	58, 487
GluI	GCNGC	7 cut(s)	55, 144, 147, 159, 162, 372, 585
GsaI	CCCAGC	1 cut(s)	191
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	3 cut(s)	8, 164, 828
HapII	CCGG	3 cut(s)	39, 252, 672
HhaI	GCGC	2 cut(s)	59, 488
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	2 cut(s)	57, 486
HinP1I	GCGC	2 cut(s)	57, 486
HinfI	GANTC	1 cut(s)	746
HpaII	CCGG	3 cut(s)	39, 252, 672
HphI	GGTGA	3 cut(s)	164, 338, 702
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	4 cut(s)	212, 511, 538, 732
HpyAV	CCTTC	3 cut(s)	43, 70, 212
HpyCH4III	ACNGT	3 cut(s)	196, 205, 403
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	5 cut(s)	158, 259, 563, 702, 815
HpyF10VI	GCNNNNNNNGC	8 cut(s)	56, 65, 74, 155, 206, 494, 569, 593
HpyF3I	CTNAG	3 cut(s)	78, 444, 471
HpySE526I	ACGT	1 cut(s)	565
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	2 cut(s)	57, 486
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	2 cut(s)	418, 604
LmnI	GCTCC	2 cut(s)	129, 680
Lsp1109I	GCAGC	4 cut(s)	66, 170, 358, 571
LweI	GCATC	2 cut(s)	145, 268
MabI	ACCWGGT	1 cut(s)	460
MaeI	CTAG	2 cut(s)	392, 593
MaeII	ACGT	1 cut(s)	565
MaeIII	GTNAC	1 cut(s)	655
MalI	GATC	2 cut(s)	420, 606
MboI	GATC	2 cut(s)	418, 604
MboII	GAAGA	3 cut(s)	227, 741, 805
MhlI	GDGCHC	2 cut(s)	391, 535
MluCI	AATT	6 cut(s)	243, 288, 306, 363, 546, 630
MluI	ACGCGT	1 cut(s)	495
MmeI	TCCRAC	3 cut(s)	48, 78, 319
MnlI	CCTC	3 cut(s)	360, 439, 514
MseI	TTAA	5 cut(s)	309, 579, 642, 726, 783
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	3 cut(s)	39, 252, 672
MspR9I	CCNGG	4 cut(s)	252, 253, 462, 636
MvaI	CCWGG	2 cut(s)	462, 636
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	8 cut(s)	56, 65, 74, 155, 206, 494, 569, 593
NciI	CCSGG	2 cut(s)	252, 253
NdeII	GATC	2 cut(s)	418, 604
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	820
NmuCI	GTSAC	1 cut(s)	655
NspI	RCATGY	1 cut(s)	187
PaeI	GCATGC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	746
PkrI	GCNGC	7 cut(s)	56, 145, 148, 160, 163, 373, 586
Ppu21I	YACGTR	1 cut(s)	566
PpuMI	RGGWCCY	1 cut(s)	819
PshBI	ATTAAT	1 cut(s)	579
Psp5II	RGGWCCY	1 cut(s)	819
Psp6I	CCWGG	2 cut(s)	460, 634
PspFI	CCCAGC	1 cut(s)	187
PspGI	CCWGG	2 cut(s)	460, 634
PspN4I	GGNNCC	1 cut(s)	820
PspPI	GGNCC	2 cut(s)	551, 819
PspPPI	RGGWCCY	1 cut(s)	819
PstNI	CAGNNNCTG	1 cut(s)	271
RsaI	GTAC	2 cut(s)	88, 249
RsaNI	GTAC	2 cut(s)	87, 248
SaqAI	TTAA	5 cut(s)	309, 579, 642, 726, 783
SatI	GCNGC	7 cut(s)	55, 144, 147, 159, 162, 372, 585
Sau3AI	GATC	2 cut(s)	418, 604
Sau96I	GGNCC	2 cut(s)	551, 819
ScrFI	CCNGG	4 cut(s)	252, 253, 462, 636
SduI	GDGCHC	2 cut(s)	391, 535
SexAI	ACCWGGT	1 cut(s)	460
SfaNI	GCATC	2 cut(s)	145, 268
SinI	GGWCC	2 cut(s)	551, 819
SmaI	CCCGGG	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
SphI	GCATGC	1 cut(s)	187
Sse9I	AATT	6 cut(s)	243, 288, 306, 363, 546, 630
SsiI	CCGC	5 cut(s)	66, 143, 146, 149, 161
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	2 cut(s)	392, 593
StyD4I	CCNGG	4 cut(s)	250, 251, 460, 634
TaaI	ACNGT	3 cut(s)	196, 205, 403
TaiI	ACGT	1 cut(s)	568
TasI	AATT	6 cut(s)	243, 288, 306, 363, 546, 630
TatI	WGTACW	1 cut(s)	86
TauI	GCSGC	3 cut(s)	146, 149, 164
TfiI	GAWTC	1 cut(s)	746
Tru1I	TTAA	5 cut(s)	309, 579, 642, 726, 783
Tru9I	TTAA	5 cut(s)	309, 579, 642, 726, 783
TscAI	CASTG	3 cut(s)	109, 272, 408
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	4 cut(s)	54, 158, 371, 584
Tsp45I	GTSAC	1 cut(s)	655
TspGWI	ACGGA	1 cut(s)	84
TspMI	CCCGGG	1 cut(s)	251
TspRI	CASTG	3 cut(s)	109, 272, 408
VpaK11BI	GGWCC	2 cut(s)	551, 819
VspI	ATTAAT	1 cut(s)	579
XapI	RAATTY	2 cut(s)	363, 630
XceI	RCATGY	1 cut(s)	187
XmaI	CCCGGG	1 cut(s)	251
XspI	CTAG	2 cut(s)	392, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.