Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007630

Physical Location & Seq

Genomic Coordinates Forward (+)

63795889 .. 63798326

Gene Structure 2438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030582

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGTACTTTGCAAAAAAAATCAGGAGGGAGTTGGGGATCTCTGGACTGGAATCGGACCTAACATTGCACGTAATGCTATCATTAATGCTGCTGAACTAGCCAGTTATGATCAAGTGAAGCAGGTTTCTTTGCCGTCTGTATTGGCTCACCAGTTGATGTGGTTAAGTCAAGATTCAAGAATGATGGGAGATTCTTCTGCTTACAAAAACACGACCGATTGCTTCGTTAAAACTTTGAAGAATGATGGACCTTTGGCCTTTTATAAGGGCTTCATCCCAAATTTTGGACGGCTAGGATCTTGGAATGCGATCATGTTTCTAACCCTTGAGCAGTACATAACAAGGACCTTTGCTACTCAATCATCTACCAAAGACGTCCCCTACTCAATAACTTTGTTACGTGGCCTAGTCCCACTTCTTCCAAACAAAGACTCTTCCAAGTTCTGCCAAGTGCCAAGCAAAGTCAACCTTGGTGTTCAAGCCCTTAACAACTGGAGCATCTACTGGCAAGAAACAGCTAGAGATGTCCACAACCACTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

181

Amino Acids

20.14

Weight (kDa)

8.9

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	8 - 42	3.8e-06	Mitochondrial carrier protein
Mito_carr	PF00153	60 - 113	2.8e-10	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54110
fragaria_vesca	FvH4_6g12220 FvH4_6g12220 FvH4_6g12220 FvH4_6g12220 FvH4_6g12220
malus_domestica	MD04G1145100.v1.1
prunus_persica	Prupe.6G269400_v2.0.a1
pyrus_communis	pycom04g13130
rosa_chinensis	RchiOBHm_Chr3g0464011
rosa_laevigata	RLG00000013105 RLG00000024728 RLG00000030582
rosa_multiflora	Rmu_co8256601.1_g000001 Rmu_sc0004616.1_g000008
rosa_roxburghii	Rroxscaffold_6G00416060
rosa_rugosa	Rorug01G0017800 Rorug03G0070000 Rorug03G0070100
rosa_samantha	Rh3AG126900 Rh3BG131000 Rh3CG133400 Rh3DG132300
rosa_wichuraiana	Rw3G010720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	264
AatII	GACGTC	1 cut(s)	378
Acc36I	ACCTGC	1 cut(s)	112
AccB7I	CCANNNNNTGG	1 cut(s)	284
AclWI	GGATC	2 cut(s)	45, 304
AcsI	RAATTY	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	375
AfaI	GTAC	2 cut(s)	6, 335
AfiI	CCNNNNNNNGG	1 cut(s)	284
AgsI	TTSAA	3 cut(s)	177, 238, 479
AluBI	AGCT	1 cut(s)	518
AluI	AGCT	1 cut(s)	518
AlwI	GGATC	2 cut(s)	45, 304
AoxI	GGCC	2 cut(s)	255, 403
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	280
AseI	ATTAAT	1 cut(s)	84
AspS9I	GGNCC	3 cut(s)	56, 248, 345
AsuHPI	GGTGA	1 cut(s)	140
AvaII	GGWCC	3 cut(s)	56, 248, 345
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	2 cut(s)	178, 239
BceAI	ACGGC	2 cut(s)	118, 305
BclI	TGATCA	1 cut(s)	109
BfaI	CTAG	4 cut(s)	98, 293, 407, 519
BfuAI	ACCTGC	1 cut(s)	112
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme18I	GGWCC	3 cut(s)	56, 248, 345
BmgT120I	GGNCC	3 cut(s)	56, 248, 345
BmsI	GCATC	1 cut(s)	507
BpmI	CTGGAG	1 cut(s)	514
BpuEI	CTTGAG	1 cut(s)	347
BsaAI	YACGTR	2 cut(s)	71, 401
BsaHI	GRCGYC	1 cut(s)	375
BsaJI	CCNNGG	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse1I	ACTGG	5 cut(s)	52, 102, 151, 497, 509
Bse3DI	GCAATG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	469
BseGI	GGATG	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMI	GCAATG	1 cut(s)	63
BseNI	ACTGG	5 cut(s)	52, 102, 151, 497, 509
BseXI	GCAGC	1 cut(s)	76
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	2 cut(s)	257, 405
BsiEI	CGRYCG	1 cut(s)	216
BslFI	GGGAC	2 cut(s)	362, 395
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmFI	GGGAC	2 cut(s)	362, 395
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	2 cut(s)	257, 405
Bsp143I	GATC	4 cut(s)	37, 109, 296, 309
BspANI	GGCC	2 cut(s)	257, 405
BspMI	ACCTGC	1 cut(s)	112
BspPI	GGATC	2 cut(s)	45, 304
BsrDI	GCAATG	1 cut(s)	63
BsrI	ACTGG	5 cut(s)	52, 102, 151, 497, 509
BssECI	CCNNGG	1 cut(s)	469
BssMI	GATC	4 cut(s)	37, 109, 296, 309
BssNI	GRCGYC	1 cut(s)	375
BssT1I	CCWWGG	1 cut(s)	469
Bst4CI	ACNGT	1 cut(s)	539
Bst6I	CTCTTC	1 cut(s)	439
BstACI	GRCGYC	1 cut(s)	375
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstBAI	YACGTR	2 cut(s)	71, 401
BstF5I	GGATG	1 cut(s)	273
BstKTI	GATC	4 cut(s)	40, 112, 299, 312
BstMBI	GATC	4 cut(s)	37, 109, 296, 309
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 98
BstV1I	GCAGC	1 cut(s)	76
BstX2I	RGATCY	2 cut(s)	37, 296
BstYI	RGATCY	2 cut(s)	37, 296
BsuRI	GGCC	2 cut(s)	257, 405
BtsCI	GGATG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	535
BveI	ACCTGC	1 cut(s)	112
Cfr13I	GGNCC	3 cut(s)	56, 248, 345
Csp6I	GTAC	2 cut(s)	5, 334
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	8 cut(s)	101, 146, 257, 270, 292, 405, 482, 518
CviKI_1	RGCY	8 cut(s)	101, 146, 257, 270, 292, 405, 482, 518
CviQI	GTAC	2 cut(s)	5, 334
DpnI	GATC	4 cut(s)	39, 111, 298, 311
DpnII	GATC	4 cut(s)	37, 109, 296, 309
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	469
Eco47I	GGWCC	3 cut(s)	56, 248, 345
EcoO109I	RGGNCCY	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	469
FaeI	CATG	1 cut(s)	316
FaiI	YATR	4 cut(s)	108, 264, 314, 338
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	2 cut(s)	362, 395
FatI	CATG	1 cut(s)	312
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	4 cut(s)	98, 293, 407, 519
GluI	GCNGC	1 cut(s)	90
GsuI	CTGGAG	1 cut(s)	514
HaeIII	GGCC	2 cut(s)	257, 405
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	1 cut(s)	316
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	4 cut(s)	51, 173, 191, 431
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	2 cut(s)	466, 529
Hpy188I	TCNGA	1 cut(s)	56
Hpy188III	TCNNGA	4 cut(s)	23, 43, 170, 177
Hpy8I	GTNNAC	2 cut(s)	466, 529
HpyCH4III	ACNGT	1 cut(s)	539
HpyCH4IV	ACGT	3 cut(s)	70, 375, 400
HpyCH4V	TGCA	2 cut(s)	12, 68
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 98
HpySE526I	ACGT	3 cut(s)	70, 375, 400
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	1 cut(s)	316
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	37, 109, 296, 309
LmnI	GCTCC	1 cut(s)	495
LpnPI	CCDG	8 cut(s)	8, 28, 33, 107, 115, 164, 478, 490
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	1 cut(s)	507
MaeI	CTAG	4 cut(s)	98, 293, 407, 519
MaeII	ACGT	3 cut(s)	70, 375, 400
MaeIII	GTNAC	1 cut(s)	396
MalI	GATC	4 cut(s)	39, 111, 298, 311
MboI	GATC	4 cut(s)	37, 109, 296, 309
MboII	GAAGA	4 cut(s)	186, 250, 410, 426
MflI	RGATCY	2 cut(s)	37, 296
MluCI	AATT	1 cut(s)	280
MlyI	GAGTC	1 cut(s)	425
MnlI	CCTC	1 cut(s)	19
MseI	TTAA	4 cut(s)	84, 164, 228, 486
Mva1269I	GAATGC	1 cut(s)	310
MwoI	GCNNNNNNNGC	2 cut(s)	74, 98
NdeII	GATC	4 cut(s)	37, 109, 296, 309
NlaIII	CATG	1 cut(s)	316
PctI	GAATGC	1 cut(s)	310
PfeI	GAWTC	3 cut(s)	51, 173, 191
PflMI	CCANNNNNTGG	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
Ppu21I	YACGTR	2 cut(s)	71, 401
PpuMI	RGGWCCY	1 cut(s)	345
PshBI	ATTAAT	1 cut(s)	84
PsiI	TTATAA	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	345
PspPI	GGNCC	3 cut(s)	56, 248, 345
PspPPI	RGGWCCY	1 cut(s)	345
PsuI	RGATCY	2 cut(s)	37, 296
RsaI	GTAC	2 cut(s)	6, 335
RsaNI	GTAC	2 cut(s)	5, 334
SaqAI	TTAA	4 cut(s)	84, 164, 228, 486
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	4 cut(s)	37, 109, 296, 309
Sau96I	GGNCC	3 cut(s)	56, 248, 345
SchI	GAGTC	1 cut(s)	425
SetI	ASST	9 cut(s)	61, 73, 126, 253, 350, 378, 403, 471, 520
SfaNI	GCATC	1 cut(s)	507
SinI	GGWCC	3 cut(s)	56, 248, 345
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	280
SspMI	CTAG	4 cut(s)	98, 293, 407, 519
StyI	CCWWGG	1 cut(s)	469
TaaI	ACNGT	1 cut(s)	539
TaiI	ACGT	3 cut(s)	73, 378, 403
TaqII	GACCGA	1 cut(s)	230
TasI	AATT	1 cut(s)	280
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	3 cut(s)	51, 173, 191
Tru1I	TTAA	4 cut(s)	84, 164, 228, 486
Tru9I	TTAA	4 cut(s)	84, 164, 228, 486
TscAI	CASTG	1 cut(s)	542
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	262
TspRI	CASTG	1 cut(s)	542
Van91I	CCANNNNNTGG	1 cut(s)	284
VpaK11BI	GGWCC	3 cut(s)	56, 248, 345
VspI	ATTAAT	1 cut(s)	84
XapI	RAATTY	1 cut(s)	280
XspI	CTAG	4 cut(s)	98, 293, 407, 519
ZraI	GACGTC	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.