Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007630

Physical Location & Seq

Genomic Coordinates Forward (+)

26259075 .. 26259880

Gene Structure 806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013105

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTTGATCAACTTGGTACAGATTTGTACTATTCCTTTGGACACTGCTAAAGTTAGGCTTCAGCTCCAAAAGAAAGGTGTTGCGGTTGCAGGTGATGTAGTGGCCTTACCTAAATACAGGGGTATGCTGGGCATGGTTGCTACTGTAGCCAGGGAAGAAGGTCTATCAGCTTTATGGAAAGGAATTGTACCCGGGTTGCATCGTCAGTGCCTGTATGGTGGTTTGAGAATTAGGTTGTATGATCCTAGTAAGACCTTTTATGTGGGCAATGACTTCGATGGAGATATTCCTTTAACAAAGAAAATTCTTGCTGCCTTGACAACAGGTGCTCTGGCAATCACAGTCGCAAATCCAACCGATCTTGTAAAGTTTAGACTTCAAGCTGAGGGAAAATTGCCACTAGGCGCACCAAGGCGCTATTCTGGTGCATTGAATGCGTATTCCACCATCTTGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

153

Amino Acids

16.44

Weight (kDa)

9.91

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	7 - 89	9e-14	Mitochondrial carrier protein
Mito_carr	PF00153	96 - 152	6.9e-07	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54110
fragaria_vesca	FvH4_6g12220 FvH4_6g12220 FvH4_6g12220 FvH4_6g12220 FvH4_6g12220
malus_domestica	MD04G1145100.v1.1
prunus_persica	Prupe.6G269400_v2.0.a1
pyrus_communis	pycom04g13130
rosa_chinensis	RchiOBHm_Chr3g0464011
rosa_laevigata	RLG00000013105 RLG00000024728 RLG00000030582
rosa_multiflora	Rmu_co8256601.1_g000001 Rmu_sc0004616.1_g000008
rosa_roxburghii	Rroxscaffold_6G00416060
rosa_rugosa	Rorug01G0017800 Rorug03G0070000 Rorug03G0070100
rosa_samantha	Rh3AG126900 Rh3BG131000 Rh3CG133400 Rh3DG132300
rosa_wichuraiana	Rw3G010720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	80
Acc36I	ACCTGC	1 cut(s)	80
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	3 cut(s)	18, 28, 189
AgsI	TTSAA	2 cut(s)	380, 433
AjnI	CCWGG	1 cut(s)	149
AjuI	GAANNNNNNNTTGG	2 cut(s)	403, 435
AluBI	AGCT	3 cut(s)	64, 170, 383
AluI	AGCT	3 cut(s)	64, 170, 383
Alw21I	GWGCWC	1 cut(s)	331
AlwI	GGATC	1 cut(s)	236
AlwNI	CAGNNNCTG	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	303
AspLEI	GCGC	2 cut(s)	407, 417
AsuC2I	CCSGG	2 cut(s)	192, 193
AsuHPI	GGTGA	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	331
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	2 cut(s)	272, 455
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	1 cut(s)	151
BclI	TGATCA	1 cut(s)	6
BcnI	CCSGG	2 cut(s)	192, 193
BfaI	CTAG	2 cut(s)	246, 401
BfmI	CTRYAG	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	418
BfuAI	ACCTGC	1 cut(s)	80
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	3 cut(s)	151, 192, 193
BmeT110I	CYCGRG	1 cut(s)	191
BmrFI	CCNGG	3 cut(s)	151, 192, 193
BmsI	GCATC	1 cut(s)	208
Bpu10I	CCTNAGC	1 cut(s)	384
BpuMI	CCSGG	2 cut(s)	192, 193
BsaJI	CCNNGG	3 cut(s)	150, 191, 410
Bse3DI	GCAATG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	3 cut(s)	150, 191, 410
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	375
BseXI	GCAGC	1 cut(s)	298
BseYI	CCCAGC	1 cut(s)	127
BshFI	GGCC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	331
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	3 cut(s)	6, 241, 358
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	80
BspPI	GGATC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	274
BssECI	CCNNGG	3 cut(s)	150, 191, 410
BssMI	GATC	3 cut(s)	6, 241, 358
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	2 cut(s)	145, 343
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstDEI	CTNAG	1 cut(s)	384
BstH2I	RGCGCY	1 cut(s)	418
BstHHI	GCGC	2 cut(s)	407, 417
BstKTI	GATC	3 cut(s)	9, 244, 361
BstMBI	GATC	3 cut(s)	6, 241, 358
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 434
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	3 cut(s)	149, 190, 191
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	104
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	42, 212
BveI	ACCTGC	1 cut(s)	80
CaiI	CAGNNNCTG	1 cut(s)	211
CfoI	GCGC	2 cut(s)	407, 417
Cfr9I	CCCGGG	1 cut(s)	191
Csp6I	GTAC	3 cut(s)	17, 27, 188
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	6 cut(s)	58, 64, 104, 149, 170, 383
CviKI_1	RGCY	6 cut(s)	58, 64, 104, 149, 170, 383
CviQI	GTAC	3 cut(s)	17, 27, 188
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	3 cut(s)	8, 243, 360
DpnII	GATC	3 cut(s)	6, 241, 358
Eco130I	CCWWGG	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	44
Eco88I	CYCGRG	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	1 cut(s)	136
FaiI	YATR	6 cut(s)	125, 134, 175, 216, 240, 261
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FatI	CATG	1 cut(s)	132
FbaI	TGATCA	1 cut(s)	6
Fnu4HI	GCNGC	1 cut(s)	312
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	2 cut(s)	246, 401
GlaI	GCGC	2 cut(s)	406, 416
GluI	GCNGC	1 cut(s)	312
GsaI	CCCAGC	1 cut(s)	131
HaeII	RGCGCY	1 cut(s)	418
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	1 cut(s)	192
HhaI	GCGC	2 cut(s)	407, 417
Hin1II	CATG	1 cut(s)	136
Hin6I	GCGC	2 cut(s)	405, 415
HinP1I	GCGC	2 cut(s)	405, 415
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	1 cut(s)	104
Hpy188III	TCNNGA	1 cut(s)	451
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	2 cut(s)	145, 343
HpyCH4V	TGCA	3 cut(s)	89, 199, 428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 434
HpyF3I	CTNAG	1 cut(s)	384
Hsp92II	CATG	1 cut(s)	136
HspAI	GCGC	2 cut(s)	405, 415
Ksp22I	TGATCA	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	6, 241, 358
LmnI	GCTCC	1 cut(s)	69
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	2 cut(s)	246, 401
MalI	GATC	3 cut(s)	8, 243, 360
MboI	GATC	3 cut(s)	6, 241, 358
MboII	GAAGA	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	4 cut(s)	183, 228, 303, 392
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	1 cut(s)	379
MseI	TTAA	1 cut(s)	293
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	3 cut(s)	151, 192, 193
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	2 cut(s)	146, 434
NciI	CCSGG	2 cut(s)	192, 193
NdeII	GATC	3 cut(s)	6, 241, 358
NlaIII	CATG	1 cut(s)	136
PaqCI	CACCTGC	1 cut(s)	80
PctI	GAATGC	1 cut(s)	439
PkrI	GCNGC	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	149
PspFI	CCCAGC	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	149
PstNI	CAGNNNCTG	1 cut(s)	211
RsaI	GTAC	3 cut(s)	18, 28, 189
RsaNI	GTAC	3 cut(s)	17, 27, 188
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	3 cut(s)	6, 241, 358
ScrFI	CCNGG	3 cut(s)	151, 192, 193
SduI	GDGCHC	1 cut(s)	331
SfaNI	GCATC	1 cut(s)	208
SfcI	CTRYAG	1 cut(s)	144
SmaI	CCCGGG	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
Sse9I	AATT	4 cut(s)	183, 228, 303, 392
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	2 cut(s)	246, 401
StyD4I	CCNGG	3 cut(s)	149, 190, 191
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	2 cut(s)	145, 343
TaqI	TCGA	1 cut(s)	276
TasI	AATT	4 cut(s)	183, 228, 303, 392
TatI	WGTACW	1 cut(s)	26
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TscAI	CASTG	2 cut(s)	49, 212
TseI	GCWGC	1 cut(s)	311
TspMI	CCCGGG	1 cut(s)	191
TspRI	CASTG	2 cut(s)	49, 212
XapI	RAATTY	1 cut(s)	303
XmaI	CCCGGG	1 cut(s)	191
XspI	CTAG	2 cut(s)	246, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.