Rmu_sc0004616.1_g000008

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004616.1
Physical Location & Seq
Forward (+)
30121 .. 35818
5698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004616.1_g000008.1.cds

Sequence Viewer

Length: 1332 bp
atgaacaactttgatgaggaaagaattttgataagaggttccgaactagacgtttcggggcttgcaaacagactaatatgcacaggaacaagaggagaaagtgggaaggagaaggaaacaacgggcttgcggtggcgctgcaggggcagtgggcgtgcggcggtgagtttcgacggtgtccacagttgcggctggcaaattactttagtacccctgtatttcgacgtggagagtaacaattggcagaaattcggtgggtgcagcaaattgcgaaaggagcataagcaggaaagtgaaaaggtgggaaatgcaaaaaaggaagtaaatgatgatggcgaggagaaaacagaaaagaaagagaagaggagagaaaacccaaatcccaaagcctgcgggggttgctcagtcatggtggcggataacaagaaacccgacatttccttcgccggaacttttgccagcagcgccttctccgcttgctttgctgagatttgtactattcctttggacactgctaaagttaggcttcagctccaaaagaaaggtgttgcggttgcgggtgatgtagtggccttacctaaatacaggggtatgctgggcacggttgctactgtagccagggaagaaggtctatcagctctttggaaaggaattgtacccgggttgcatcgtcagtgcctgtatggaggtttgagaattgggttgtatgatcctattaagaccttatatgtgggcaatgacttcgttggagatgttcctttaacaaagaaaattcttgctgccttgacaacaggtgctctagcaatcacagtggcaaatccaactgatcttgtaaaagttagacttcaagctgagggaaaattaccaccaggtgcaccaaggcgctattctggcgcactgaatgcatattccaccattttgagacaggagggagttggggctctctggactggaattggacctaacattgcacgtaatgctatcattaatgctgctgaactagctagttatgatcaagtgaagcagacacttttgaaaattcccgggtttaaggacaatattgtcactcatctatttgccggtctgggggcaggtttctttgccgtctgtattggctcaccagttgatgtggttaagtcaagaatgatgggtgattctgctgcttacaaaagcacaattgattgctttgttaaaactttaaagaatgatggacctttggccttttataagggcttcatcccaaattttggaaggctaggatcttggaatgtgatcatgtttctaaccttcgagcaggctaagaagttcgtgaaaagtatagagtcaaaatga

Protein Analysis

443

Amino Acids

48.01

Weight (kDa)

9.33

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1227
AasI GACNNNNNNGTC 1 cut(s) 1061
Acc36I ACCTGC 1 cut(s) 1082
AccB7I CCANNNNNTGG 1 cut(s) 1247
AciI CCGC 9 cut(s) 130, 158, 161, 189, 393, 416, 474, 551, 557
AclWI GGATC 2 cut(s) 704, 1267
AcsI RAATTY 5 cut(s) 24, 248, 771, 1038, 1243
AcuI CTGAAG 1 cut(s) 512
AdeI CACNNNGTG 1 cut(s) 872
AfaI GTAC 3 cut(s) 210, 496, 657
AfiI CCNNNNNNNGG 2 cut(s) 1086, 1247
AgsI TTSAA 2 cut(s) 848, 1036
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 2 cut(s) 617, 868
AjuI GAANNNNNNNTTGG 2 cut(s) 871, 903
AluBI AGCT 4 cut(s) 532, 638, 851, 1004
AluI AGCT 4 cut(s) 532, 638, 851, 1004
Alw21I GWGCWC 2 cut(s) 799, 877
Alw26I GTCTC 1 cut(s) 916
Alw44I GTGCAC 1 cut(s) 873
AlwI GGATC 2 cut(s) 704, 1267
AlwNI CAGNNNCTG 1 cut(s) 679
Ama87I CYCGRG 2 cut(s) 659, 1043
AoxI GGCC 2 cut(s) 570, 1218
ApaLI GTGCAC 1 cut(s) 873
ApeKI GCWGC 6 cut(s) 138, 261, 462, 779, 992, 1160
ApoI RAATTY 5 cut(s) 24, 248, 771, 1038, 1243
ArsI GACNNNNNNTTYG 2 cut(s) 425, 457
AseI ATTAAT 1 cut(s) 987
AspLEI GCGC 4 cut(s) 138, 467, 885, 896
AspS9I GGNCC 2 cut(s) 959, 1211
AsuC2I CCSGG 4 cut(s) 660, 661, 1044, 1045
AsuHPI GGTGA 4 cut(s) 175, 572, 1110, 1163
AvaI CYCGRG 2 cut(s) 659, 1043
AvaII GGWCC 2 cut(s) 959, 1211
BaeGI GKGCMC 2 cut(s) 602, 877
BaeI ACNNNNGTAYC 2 cut(s) 192, 225
BanII GRGCYC 1 cut(s) 943
Bbv12I GWGCWC 2 cut(s) 799, 877
BbvCI CCTCAGC 1 cut(s) 852
BbvI GCAGC 6 cut(s) 125, 273, 474, 766, 979, 1147
BccI CCATC 3 cut(s) 326, 1141, 1202
BceAI ACGGC 1 cut(s) 1088
BcgI CGANNNNNNTGC 2 cut(s) 724, 758
BciT130I CCWGG 2 cut(s) 619, 870
BclI TGATCA 2 cut(s) 1012, 1272
BcnI CCSGG 4 cut(s) 660, 661, 1044, 1045
BcoDI GTCTC 1 cut(s) 916
BfaI CTAG 5 cut(s) 47, 800, 1001, 1005, 1256
BfmI CTRYAG 2 cut(s) 139, 612
BfoI RGCGCY 3 cut(s) 139, 468, 886
BfuAI ACCTGC 1 cut(s) 1082
BisI GCNGC 8 cut(s) 139, 159, 190, 262, 463, 780, 993, 1161
BlsI GCNGC 8 cut(s) 140, 160, 191, 263, 464, 781, 994, 1162
Bme1390I CCNGG 6 cut(s) 619, 660, 661, 870, 1044, 1045
Bme18I GGWCC 2 cut(s) 959, 1211
BmeT110I CYCGRG 2 cut(s) 659, 1043
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 959, 1211
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 6 cut(s) 619, 660, 661, 870, 1044, 1045
BmsI GCATC 1 cut(s) 676
Bpu10I CCTNAGC 1 cut(s) 852
BpuMI CCSGG 4 cut(s) 660, 661, 1044, 1045
BsaAI YACGTR 1 cut(s) 974
BsaJI CCNNGG 4 cut(s) 618, 659, 878, 1043
Bsc4I CCNNNNNNNGG 2 cut(s) 1086, 1247
Bse118I RCCGGY 1 cut(s) 1079
Bse1I ACTGG 2 cut(s) 955, 1121
Bse3DI GCAATG 2 cut(s) 742, 966
BseBI CCWGG 2 cut(s) 619, 870
BseDI CCNNGG 4 cut(s) 618, 659, 878, 1043
BseGI GGATG 1 cut(s) 1236
BseLI CCNNNNNNNGG 2 cut(s) 1086, 1247
BseMI GCAATG 2 cut(s) 742, 966
BseMII CTCAG 3 cut(s) 417, 477, 843
BseNI ACTGG 2 cut(s) 955, 1121
BseRI GAGGAG 3 cut(s) 108, 353, 379
BseSI GKGCMC 2 cut(s) 602, 877
BseXI GCAGC 6 cut(s) 125, 273, 474, 766, 979, 1147
BseYI CCCAGC 1 cut(s) 595
BsgI GTGCAG 1 cut(s) 280
BshFI GGCC 2 cut(s) 572, 1220
BsiHKAI GWGCWC 2 cut(s) 799, 877
BsiHKCI CYCGRG 2 cut(s) 659, 1043
BsiSI CCGG 4 cut(s) 447, 660, 1044, 1080
BslI CCNNNNNNNGG 2 cut(s) 1086, 1247
BsmAI GTCTC 1 cut(s) 916
BsmI GAATGC 1 cut(s) 907
BsnI GGCC 2 cut(s) 572, 1220
BsoBI CYCGRG 2 cut(s) 659, 1043
Bsp1286I GDGCHC 4 cut(s) 602, 799, 877, 943
Bsp143I GATC 5 cut(s) 709, 826, 1012, 1259, 1272
BspACI CCGC 9 cut(s) 130, 158, 161, 189, 393, 416, 474, 551, 557
BspANI GGCC 2 cut(s) 572, 1220
BspCNI CTCAG 3 cut(s) 416, 478, 844
BspLI GGNNCC 1 cut(s) 40
BspMAI CTGCAG 1 cut(s) 143
BspMI ACCTGC 1 cut(s) 1082
BspPI GGATC 2 cut(s) 704, 1267
BsrDI GCAATG 2 cut(s) 742, 966
BsrFI RCCGGY 1 cut(s) 1079
BsrI ACTGG 2 cut(s) 955, 1121
BssAI RCCGGY 1 cut(s) 1079
BssECI CCNNGG 4 cut(s) 618, 659, 878, 1043
BssMI GATC 5 cut(s) 709, 826, 1012, 1259, 1272
BssT1I CCWWGG 1 cut(s) 878
Bst2UI CCWGG 2 cut(s) 619, 870
Bst4CI ACNGT 5 cut(s) 176, 185, 604, 613, 811
Bst6I CTCTTC 1 cut(s) 356
BstAPI GCANNNNNTGC 2 cut(s) 902, 977
BstBAI YACGTR 1 cut(s) 974
BstC8I GCNNGC 8 cut(s) 63, 128, 156, 194, 391, 460, 478, 1296
BstDEI CTNAG 4 cut(s) 403, 486, 852, 1299
BstF5I GGATG 1 cut(s) 1236
BstH2I RGCGCY 3 cut(s) 139, 468, 886
BstHHI GCGC 4 cut(s) 138, 467, 885, 896
BstKTI GATC 5 cut(s) 712, 829, 1015, 1262, 1275
BstMAI GTCTC 1 cut(s) 916
BstMBI GATC 5 cut(s) 709, 826, 1012, 1259, 1272
BstNI CCWGG 2 cut(s) 619, 870
BstSCI CCNGG 6 cut(s) 617, 658, 659, 868, 1042, 1043
BstSFI CTRYAG 2 cut(s) 139, 612
BstSLI GKGCMC 2 cut(s) 602, 877
BstV1I GCAGC 6 cut(s) 125, 273, 474, 766, 979, 1147
BstX2I RGATCY 1 cut(s) 1259
BstYI RGATCY 1 cut(s) 1259
BsuRI GGCC 2 cut(s) 572, 1220
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 1236
BtsI GCAGTG 2 cut(s) 154, 510
BtsIMutI CAGTG 5 cut(s) 154, 510, 680, 816, 896
BveI ACCTGC 1 cut(s) 1082
Cac8I GCNNGC 8 cut(s) 63, 128, 156, 194, 391, 460, 478, 1296
CaiI CAGNNNCTG 1 cut(s) 679
CfoI GCGC 4 cut(s) 138, 467, 885, 896
Cfr10I RCCGGY 1 cut(s) 1079
Cfr13I GGNCC 2 cut(s) 959, 1211
Cfr9I CCCGGG 2 cut(s) 659, 1043
CsiI ACCWGGT 1 cut(s) 868
Csp6I GTAC 3 cut(s) 209, 495, 656
CspCI CAANNNNNGTGG 2 cut(s) 792, 827
CviAII CATG 2 cut(s) 409, 1276
CviQI GTAC 3 cut(s) 209, 495, 656
DdeI CTNAG 4 cut(s) 403, 486, 852, 1299
DpnI GATC 5 cut(s) 711, 828, 1014, 1261, 1274
DpnII GATC 5 cut(s) 709, 826, 1012, 1259, 1272
DraI TTTAAA 1 cut(s) 1200
DraIII CACNNNGTG 1 cut(s) 872
DrdI GACNNNNNNGTC 1 cut(s) 1061
DseDI GACNNNNNNGTC 1 cut(s) 1061
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
EciI GGCGGA 1 cut(s) 431
Eco130I CCWWGG 1 cut(s) 878
Eco24I GRGCYC 1 cut(s) 943
Eco47I GGWCC 2 cut(s) 959, 1211
Eco57I CTGAAG 1 cut(s) 512
Eco88I CYCGRG 2 cut(s) 659, 1043
EcoRII CCWGG 2 cut(s) 617, 868
EcoT14I CCWWGG 1 cut(s) 878
EcoT22I ATGCAT 1 cut(s) 907
EcoT38I GRGCYC 1 cut(s) 943
ErhI CCWWGG 1 cut(s) 878
FaeI CATG 2 cut(s) 412, 1279
FalI AAGNNNNNCTT 4 cut(s) 510, 542, 828, 860
FatI CATG 2 cut(s) 408, 1275
FauI CCCGC 2 cut(s) 386, 550
FbaI TGATCA 2 cut(s) 1012, 1272
Fnu4HI GCNGC 8 cut(s) 139, 159, 190, 262, 463, 780, 993, 1161
FokI GGATG 1 cut(s) 1223
FriOI GRGCYC 1 cut(s) 943
Fsp4HI GCNGC 8 cut(s) 139, 159, 190, 262, 463, 780, 993, 1161
FspBI CTAG 5 cut(s) 47, 800, 1001, 1005, 1256
GlaI GCGC 4 cut(s) 137, 466, 884, 895
GluI GCNGC 8 cut(s) 139, 159, 190, 262, 463, 780, 993, 1161
GsaI CCCAGC 1 cut(s) 599
HaeII RGCGCY 3 cut(s) 139, 468, 886
HaeIII GGCC 2 cut(s) 572, 1220
HapII CCGG 4 cut(s) 447, 660, 1044, 1080
HhaI GCGC 4 cut(s) 138, 467, 885, 896
Hin1II CATG 2 cut(s) 412, 1279
Hin6I GCGC 4 cut(s) 136, 465, 883, 894
HinP1I GCGC 4 cut(s) 136, 465, 883, 894
HinfI GANTC 2 cut(s) 1154, 1322
HpaII CCGG 4 cut(s) 447, 660, 1044, 1080
HphI GGTGA 4 cut(s) 175, 572, 1110, 1163
Hpy166II GTNNAC 2 cut(s) 181, 875
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 3 cut(s) 946, 1140, 1309
Hpy8I GTNNAC 2 cut(s) 181, 875
Hpy99I CGWCG 2 cut(s) 176, 227
HpyAV CCTTC 7 cut(s) 100, 106, 451, 478, 620, 1245, 1297
HpyCH4III ACNGT 5 cut(s) 176, 185, 604, 613, 811
HpyCH4IV ACGT 3 cut(s) 51, 225, 973
HpyCH4V TGCA 9 cut(s) 65, 81, 141, 261, 311, 667, 875, 905, 971
HpyF3I CTNAG 4 cut(s) 403, 486, 852, 1299
HpySE526I ACGT 3 cut(s) 51, 225, 973
Hsp92II CATG 2 cut(s) 412, 1279
HspAI GCGC 4 cut(s) 136, 465, 883, 894
Ksp22I TGATCA 2 cut(s) 1012, 1272
Kzo9I GATC 5 cut(s) 709, 826, 1012, 1259, 1272
LmnI GCTCC 2 cut(s) 277, 537
Lsp1109I GCAGC 6 cut(s) 125, 273, 474, 766, 979, 1147
LweI GCATC 1 cut(s) 676
MabI ACCWGGT 1 cut(s) 868
MaeI CTAG 5 cut(s) 47, 800, 1001, 1005, 1256
MaeII ACGT 3 cut(s) 51, 225, 973
MaeIII GTNAC 2 cut(s) 233, 1063
MalI GATC 5 cut(s) 711, 828, 1014, 1261, 1274
MboI GATC 5 cut(s) 709, 826, 1012, 1259, 1272
MboII GAAGA 2 cut(s) 373, 635
MfeI CAATTG 2 cut(s) 238, 1176
MflI RGATCY 1 cut(s) 1259
MhlI GDGCHC 4 cut(s) 602, 799, 877, 943
MlyI GAGTC 1 cut(s) 1331
MmeI TCCRAC 2 cut(s) 727, 845
MnlI CCTC 8 cut(s) 10, 29, 86, 331, 357, 680, 847, 922
Mph1103I ATGCAT 1 cut(s) 907
MseI TTAA 7 cut(s) 717, 761, 987, 1050, 1134, 1191, 1199
MspI CCGG 4 cut(s) 447, 660, 1044, 1080
MspR9I CCNGG 6 cut(s) 619, 660, 661, 870, 1044, 1045
MunI CAATTG 2 cut(s) 238, 1176
Mva1269I GAATGC 1 cut(s) 907
MvaI CCWGG 2 cut(s) 619, 870
NciI CCSGG 4 cut(s) 660, 661, 1044, 1045
NdeII GATC 5 cut(s) 709, 826, 1012, 1259, 1272
NlaIII CATG 2 cut(s) 412, 1279
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 1063
NsiI ATGCAT 1 cut(s) 907
PctI GAATGC 1 cut(s) 907
PfeI GAWTC 1 cut(s) 1154
PflFI GACNNNGTC 1 cut(s) 176
PflMI CCANNNNNTGG 1 cut(s) 1247
PkrI GCNGC 8 cut(s) 140, 160, 191, 263, 464, 781, 994, 1162
PleI GAGTC 1 cut(s) 1330
PpsI GAGTC 1 cut(s) 1330
Ppu21I YACGTR 1 cut(s) 974
PshBI ATTAAT 1 cut(s) 987
PsiI TTATAA 1 cut(s) 1227
Psp6I CCWGG 2 cut(s) 617, 868
PspFI CCCAGC 1 cut(s) 595
PspGI CCWGG 2 cut(s) 617, 868
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 2 cut(s) 959, 1211
PstI CTGCAG 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 679
PsuI RGATCY 1 cut(s) 1259
PsyI GACNNNGTC 1 cut(s) 176
RsaI GTAC 3 cut(s) 210, 496, 657
RsaNI GTAC 3 cut(s) 209, 495, 656
SaqAI TTAA 7 cut(s) 717, 761, 987, 1050, 1134, 1191, 1199
SatI GCNGC 8 cut(s) 139, 159, 190, 262, 463, 780, 993, 1161
Sau3AI GATC 5 cut(s) 709, 826, 1012, 1259, 1272
Sau96I GGNCC 2 cut(s) 959, 1211
SchI GAGTC 1 cut(s) 1331
ScrFI CCNGG 6 cut(s) 619, 660, 661, 870, 1044, 1045
SduI GDGCHC 4 cut(s) 602, 799, 877, 943
SexAI ACCWGGT 1 cut(s) 868
SfaNI GCATC 1 cut(s) 676
SfcI CTRYAG 2 cut(s) 139, 612
SinI GGWCC 2 cut(s) 959, 1211
SmaI CCCGGG 2 cut(s) 661, 1045
SsiI CCGC 9 cut(s) 130, 158, 161, 189, 393, 416, 474, 551, 557
SspI AATATT 1 cut(s) 1060
SspMI CTAG 5 cut(s) 47, 800, 1001, 1005, 1256
StyD4I CCNGG 6 cut(s) 617, 658, 659, 868, 1042, 1043
StyI CCWWGG 1 cut(s) 878
TaaI ACNGT 5 cut(s) 176, 185, 604, 613, 811
TaiI ACGT 3 cut(s) 54, 228, 976
TaqI TCGA 3 cut(s) 171, 222, 1290
TatI WGTACW 1 cut(s) 494
TauI GCSGC 2 cut(s) 161, 192
TfiI GAWTC 1 cut(s) 1154
Tru1I TTAA 7 cut(s) 717, 761, 987, 1050, 1134, 1191, 1199
Tru9I TTAA 7 cut(s) 717, 761, 987, 1050, 1134, 1191, 1199
TscAI CASTG 5 cut(s) 154, 517, 680, 816, 903
TseFI GTSAC 1 cut(s) 1063
TseI GCWGC 6 cut(s) 138, 261, 462, 779, 992, 1160
Tsp45I GTSAC 1 cut(s) 1063
TspDTI ATGAA 2 cut(s) 17, 1225
TspMI CCCGGG 2 cut(s) 659, 1043
TspRI CASTG 5 cut(s) 154, 517, 680, 816, 903
Tth111I GACNNNGTC 1 cut(s) 176
Van91I CCANNNNNTGG 1 cut(s) 1247
VneI GTGCAC 1 cut(s) 873
VpaK11BI GGWCC 2 cut(s) 959, 1211
VspI ATTAAT 1 cut(s) 987
XapI RAATTY 5 cut(s) 24, 248, 771, 1038, 1243
XmaI CCCGGG 2 cut(s) 659, 1043
XspI CTAG 5 cut(s) 47, 800, 1001, 1005, 1256
Zsp2I ATGCAT 1 cut(s) 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.