Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005235

Physical Location & Seq

Genomic Coordinates Forward (+)

20145905 .. 20148266

Gene Structure 2362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G54420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTTGACTCCCACCATTTCTAAATCCATCTCTTTAGTAACCATTCTATTAGTTCTACAAGCTTTCTCTAACACAACAAAGGCTCAAAATTGCGGTTGTTCGTCAGAGCTATGTTGTAGTCAGTTTGGCTTTTGCGGTAACACTTCAGACTATTGTGGTGTAGGTTGCCAACAAGGACCTTGTTTTGCTCCTCCCCCTGCAAATGGTGTCTCTGTGGCTGAGATTGTAACGCAAGAATTCTTCAATGGAATCATCAGTCAAGCCGCGTCTAGTTGCGCCGGCAATAGATTTTACAGTCGGGGAGCTTTTCTTGAGGCCTTAGACTCATATTCTCGTTTCGGTAGAGTTGGATCGACCGACGACTCTAGGCGTGAGATTGCAGCGTTCTTTGCTCATGTCACACATGAAACAGGACATTTCTGCTACATAGAAGAGATAGACGGAGCCTCAAAGGATTACTGCGACGAGAATGCAACACAATATCCATGCAATCCTAACAAAGGCTACTACGGCCGCGGACCGATCCAACTCTCTTGGAATTTCAACTACGGGCCAGCCGGGACAGCAATTGGTTTCGACGGCCTGAATGCACCGGAAACAGTAGCCACGGATCCAGTCATATCCTTCAAAACCGCCTTGTGGTACTGGACCAATAGGGTTCAGCCTGTTATCTCTCAAGGTTTTGGTGCAACAATCCGTGCCATTAACGGTGCTTTGGAGTGTGACGGGGCCAACACAGCCACCGTTCAAGCTAGAGTTCGTTACTACACGGATTATTGTCGTCAACTTGGCGTTGATCCTGGAAACAACCTCACTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0010262 GO:0016787 GO:0016798 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

273

Amino Acids

29.44

Weight (kDa)

5.05

Isoelectric Point (pI)

28.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chitin_bind_1	PF00187	27 - 61	8.6e-08	Chitin recognition protein
Glyco_hydro_19	PF00182	75 - 222	2.2e-39	Chitinase class I
Glyco_hydro_19	PF00182	226 - 273	2e-08	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54420
fragaria_vesca	FvH4_4g10640
malus_domestica	MD04G1048000.v1.1
prunus_persica	Prupe.1G204000_v2.0.a1 Prupe.1G204700_v2.0.a1 Prupe.1G204800_v2.0.a1
pyrus_communis	pycom04g04190
rosa_chinensis	RchiOBHm_Chr4g0406271 RchiOBHm_Chr7g0219281
rosa_laevigata	RLG00000002299 RLG00000008782
rosa_multiflora	Rmu_sc0005137.1_g000013 Rmu_sc0009785.1_g000018 Rmu_ssc0000456.1_g000006
rosa_roxburghii	Rroxscaffold_3G00240100 Rroxscaffold_5G00351010
rosa_rugosa	Rorug04G0067400 Rorug07G0184100
rosa_samantha	Rh4AG136900 Rh4BG134500 Rh4CG145100 Rh4DG131600 Rh7AG327100 Rh7BG317000 Rh7CG344400 Rh7DG322500
rosa_wichuraiana	Rw4G011100 Rw4G011240 Rw7G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	266, 516
AciI	CCGC	6 cut(s)	93, 135, 264, 514, 516, 633
AclWI	GGATC	5 cut(s)	358, 517, 605, 618, 791
AcoI	YGGCCR	1 cut(s)	511
AcsI	RAATTY	2 cut(s)	236, 538
AcuI	CTGAAG	1 cut(s)	129
AfaI	GTAC	1 cut(s)	644
AfiI	CCNNNNNNNGG	3 cut(s)	203, 500, 639
AgsI	TTSAA	4 cut(s)	244, 544, 628, 749
AjnI	CCWGG	1 cut(s)	799
AluBI	AGCT	4 cut(s)	62, 109, 305, 752
AluI	AGCT	4 cut(s)	62, 109, 305, 752
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	5 cut(s)	358, 517, 605, 618, 791
AoxI	GGCC	5 cut(s)	315, 511, 551, 580, 729
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	2 cut(s)	236, 538
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	5 cut(s)	176, 518, 551, 648, 729
AsuC2I	CCSGG	1 cut(s)	559
AvaII	GGWCC	3 cut(s)	176, 518, 648
BamHI	GGATCC	1 cut(s)	610
BbvI	GCAGC	1 cut(s)	392
BccI	CCATC	1 cut(s)	35
BceAI	ACGGC	2 cut(s)	526, 595
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BciT130I	CCWGG	1 cut(s)	801
BcnI	CCSGG	1 cut(s)	559
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	3 cut(s)	270, 366, 753
BisI	GCNGC	3 cut(s)	264, 381, 514
BlsI	GCNGC	3 cut(s)	265, 382, 515
Bme1390I	CCNGG	2 cut(s)	559, 801
Bme18I	GGWCC	3 cut(s)	176, 518, 648
BmgT120I	GGNCC	5 cut(s)	176, 518, 551, 648, 729
BmiI	GGNNCC	3 cut(s)	445, 612, 730
BmrFI	CCNGG	2 cut(s)	559, 801
BpuEI	CTTGAG	2 cut(s)	332, 660
BpuMI	CCSGG	1 cut(s)	559
BsaJI	CCNNGG	2 cut(s)	514, 606
BsaWI	WCCGGW	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 500, 639
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	2 cut(s)	614, 650
BseBI	CCWGG	1 cut(s)	801
BseDI	CCNNGG	2 cut(s)	514, 606
BseLI	CCNNNNNNNGG	3 cut(s)	203, 500, 639
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	2 cut(s)	614, 650
BseRI	GAGGAG	1 cut(s)	180
BseX3I	CGGCCG	1 cut(s)	511
BseXI	GCAGC	1 cut(s)	392
Bsh1236I	CGCG	2 cut(s)	266, 516
Bsh1285I	CGRYCG	2 cut(s)	357, 514
BshFI	GGCC	5 cut(s)	317, 513, 553, 582, 731
BsiEI	CGRYCG	2 cut(s)	357, 514
BsiSI	CCGG	3 cut(s)	279, 558, 593
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	3 cut(s)	203, 500, 639
BsmAI	GTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	574
BsmI	GAATGC	2 cut(s)	475, 592
BsnI	GGCC	5 cut(s)	317, 513, 553, 582, 731
Bsp143I	GATC	4 cut(s)	350, 522, 610, 796
BspACI	CCGC	6 cut(s)	93, 135, 264, 514, 516, 633
BspANI	GGCC	5 cut(s)	317, 513, 553, 582, 731
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	2 cut(s)	266, 516
BspLI	GGNNCC	3 cut(s)	445, 612, 730
BspPI	GGATC	5 cut(s)	358, 517, 605, 618, 791
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	614, 650
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	514, 606
BssMI	GATC	4 cut(s)	350, 522, 610, 796
Bst2UI	CCWGG	1 cut(s)	801
Bst4CI	ACNGT	4 cut(s)	296, 601, 710, 745
Bst6I	CTCTTC	1 cut(s)	426
BstC8I	GCNNGC	2 cut(s)	280, 555
BstDEI	CTNAG	2 cut(s)	219, 319
BstDSI	CCRYGG	2 cut(s)	514, 606
BstENI	CCTNNNNNAGG	1 cut(s)	498
BstFNI	CGCG	2 cut(s)	266, 516
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	4 cut(s)	353, 525, 613, 799
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	4 cut(s)	350, 522, 610, 796
BstMCI	CGRYCG	2 cut(s)	357, 514
BstMWI	GCNNNNNNNGC	4 cut(s)	389, 510, 563, 737
BstNI	CCWGG	1 cut(s)	801
BstSCI	CCNGG	2 cut(s)	557, 799
BstUI	CGCG	2 cut(s)	266, 516
BstV1I	GCAGC	1 cut(s)	392
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
BstZI	CGGCCG	1 cut(s)	511
BsuRI	GGCC	5 cut(s)	317, 513, 553, 582, 731
BtgI	CCRYGG	2 cut(s)	514, 606
Cac8I	GCNNGC	2 cut(s)	280, 555
CfoI	GCGC	1 cut(s)	278
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	5 cut(s)	176, 518, 551, 648, 729
Cfr42I	CCGCGG	1 cut(s)	517
CpoI	CGGWCCG	1 cut(s)	518
CseI	GACGC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	643
CspI	CGGWCCG	1 cut(s)	518
CviAII	CATG	3 cut(s)	395, 404, 486
CviQI	GTAC	1 cut(s)	643
DdeI	CTNAG	2 cut(s)	219, 319
DpnI	GATC	4 cut(s)	352, 524, 612, 798
DpnII	GATC	4 cut(s)	350, 522, 610, 796
EaeI	YGGCCR	1 cut(s)	511
EagI	CGGCCG	1 cut(s)	511
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
EclXI	CGGCCG	1 cut(s)	511
Eco147I	AGGCCT	1 cut(s)	317
Eco47I	GGWCC	3 cut(s)	176, 518, 648
Eco52I	CGGCCG	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	129
EcoNI	CCTNNNNNAGG	1 cut(s)	498
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	799
FaeI	CATG	3 cut(s)	398, 407, 489
FaiI	YATR	7 cut(s)	112, 328, 396, 405, 428, 487, 620
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	3 cut(s)	394, 403, 485
Fnu4HI	GCNGC	3 cut(s)	264, 381, 514
Fsp4HI	GCNGC	3 cut(s)	264, 381, 514
FspBI	CTAG	3 cut(s)	270, 366, 753
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	3 cut(s)	264, 381, 514
HaeIII	GGCC	5 cut(s)	317, 513, 553, 582, 731
HapII	CCGG	3 cut(s)	279, 558, 593
HgaI	GACGC	1 cut(s)	255
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	3 cut(s)	398, 407, 489
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HincII	GTYRAC	2 cut(s)	6, 785
HindII	GTYRAC	2 cut(s)	6, 785
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	4 cut(s)	7, 249, 323, 362
HpaII	CCGG	3 cut(s)	279, 558, 593
Hpy166II	GTNNAC	2 cut(s)	6, 785
Hpy188I	TCNGA	2 cut(s)	106, 148
Hpy188III	TCNNGA	1 cut(s)	311
Hpy8I	GTNNAC	2 cut(s)	6, 785
Hpy99I	CGWCG	3 cut(s)	362, 467, 581
HpyAV	CCTTC	1 cut(s)	634
HpyCH4III	ACNGT	4 cut(s)	296, 601, 710, 745
HpyCH4V	TGCA	6 cut(s)	200, 380, 473, 489, 590, 689
HpyF10VI	GCNNNNNNNGC	4 cut(s)	389, 510, 563, 737
HpyF3I	CTNAG	2 cut(s)	219, 319
Hsp92II	CATG	3 cut(s)	398, 407, 489
HspAI	GCGC	1 cut(s)	276
KroI	GCCGGC	1 cut(s)	278
KroNI	GCCGGC	1 cut(s)	280
KspI	CCGCGG	1 cut(s)	517
Kzo9I	GATC	4 cut(s)	350, 522, 610, 796
LmnI	GCTCC	3 cut(s)	193, 302, 443
Lsp1109I	GCAGC	1 cut(s)	392
MaeI	CTAG	3 cut(s)	270, 366, 753
MaeIII	GTNAC	6 cut(s)	37, 137, 226, 397, 722, 761
MalI	GATC	4 cut(s)	352, 524, 612, 798
MboI	GATC	4 cut(s)	350, 522, 610, 796
MboII	GAAGA	2 cut(s)	232, 443
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	1 cut(s)	610
MluCI	AATT	4 cut(s)	88, 236, 538, 567
MlyI	GAGTC	2 cut(s)	317, 356
MmeI	TCCRAC	2 cut(s)	328, 550
MnlI	CCTC	4 cut(s)	201, 307, 457, 821
MroNI	GCCGGC	1 cut(s)	278
MseI	TTAA	1 cut(s)	705
MspA1I	CMGCKG	1 cut(s)	516
MspI	CCGG	3 cut(s)	279, 558, 593
MspR9I	CCNGG	2 cut(s)	559, 801
MunI	CAATTG	1 cut(s)	567
Mva1269I	GAATGC	2 cut(s)	475, 592
MvaI	CCWGG	1 cut(s)	801
MvnI	CGCG	2 cut(s)	266, 516
MwoI	GCNNNNNNNGC	4 cut(s)	389, 510, 563, 737
NaeI	GCCGGC	1 cut(s)	280
NciI	CCSGG	1 cut(s)	559
NdeII	GATC	4 cut(s)	350, 522, 610, 796
NgoMIV	GCCGGC	1 cut(s)	278
NlaIII	CATG	3 cut(s)	398, 407, 489
NlaIV	GGNNCC	3 cut(s)	445, 612, 730
NmuCI	GTSAC	2 cut(s)	397, 722
PceI	AGGCCT	1 cut(s)	317
PctI	GAATGC	2 cut(s)	475, 592
PdiI	GCCGGC	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	249
PfoI	TCCNGGA	1 cut(s)	799
PkrI	GCNGC	3 cut(s)	265, 382, 515
PleI	GAGTC	2 cut(s)	317, 356
PpsI	GAGTC	2 cut(s)	317, 356
PpuMI	RGGWCCY	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	799
PspGI	CCWGG	1 cut(s)	799
PspN4I	GGNNCC	3 cut(s)	445, 612, 730
PspPI	GGNCC	5 cut(s)	176, 518, 551, 648, 729
PspPPI	RGGWCCY	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	610
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
Rsr2I	CGGWCCG	1 cut(s)	518
RsrII	CGGWCCG	1 cut(s)	518
SacII	CCGCGG	1 cut(s)	517
SaqAI	TTAA	1 cut(s)	705
SatI	GCNGC	3 cut(s)	264, 381, 514
Sau3AI	GATC	4 cut(s)	350, 522, 610, 796
Sau96I	GGNCC	5 cut(s)	176, 518, 551, 648, 729
SchI	GAGTC	2 cut(s)	317, 356
ScrFI	CCNGG	2 cut(s)	559, 801
SetI	ASST	8 cut(s)	64, 111, 166, 181, 307, 682, 754, 813
Sfr303I	CCGCGG	1 cut(s)	517
SgrBI	CCGCGG	1 cut(s)	517
SinI	GGWCC	3 cut(s)	176, 518, 648
SmlI	CTYRAG	2 cut(s)	311, 675
SmoI	CTYRAG	2 cut(s)	311, 675
Sse9I	AATT	4 cut(s)	88, 236, 538, 567
SseBI	AGGCCT	1 cut(s)	317
SsiI	CCGC	6 cut(s)	93, 135, 264, 514, 516, 633
SspMI	CTAG	3 cut(s)	270, 366, 753
StuI	AGGCCT	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	557, 799
TaaI	ACNGT	4 cut(s)	296, 601, 710, 745
TaqI	TCGA	2 cut(s)	353, 576
TaqII	GACCGA	2 cut(s)	371, 535
TasI	AATT	4 cut(s)	88, 236, 538, 567
TauI	GCSGC	2 cut(s)	266, 516
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	1 cut(s)	705
Tru9I	TTAA	1 cut(s)	705
TseFI	GTSAC	2 cut(s)	397, 722
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	2 cut(s)	397, 722
TspDTI	ATGAA	1 cut(s)	420
TspGWI	ACGGA	4 cut(s)	456, 623, 686, 785
VpaK11BI	GGWCC	3 cut(s)	176, 518, 648
XagI	CCTNNNNNAGG	1 cut(s)	498
XapI	RAATTY	2 cut(s)	236, 538
XspI	CTAG	3 cut(s)	270, 366, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.