Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005235

Physical Location & Seq

Genomic Coordinates Reverse (-)

20510636 .. 20512098

Gene Structure 1463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G204700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCTCAAATCATTGCACCCAGCAACATATTTCTAACCCTTATTATTGTAGCTGCAGCTGCAGCTGGGTATGTGGAGGCACAAAATTGTGGGTGTGCTTCAGACTTGTGTTGTAGCAAATATGGGTATTGTGGCACAAGTGATGACTACTGCGGCACCGGGTGCCAAGCAGGGCCGTGCAAGACGGCGCCTCTAACCCCGAGCACTAGCGACGTGTCAGTGGCTGATATCGTCACGCCCGAATTCTTCAATAGCATAATTGGCCAGGCCGAGGCAAGCTGCGCCGGCAAAAACTTTTATTCCCGAGCTACCTTTCTTGAGGCTCTCAAGTCTTATGATCAGTTCGGTAAGATTGGCTCCATTGACGACTCTAAGCGTGAGATTGCTGCCTTCTTTGCCCATGTCACCCATGAGACTTTTCATTTCTGCTACATAGAAGAGATAGATGGACCCTCAAAGGACTACTGTGATGAGAGCAACACACAATATCCATGCAAGCCAAACAAGGGCTACTACGGGCGTGGACCAATCCAACTGTCATGGAACTTCAACTACGGCCCAGCCGGAGAGAGCATTGGCTTCGACGGATTAAACTCTCCTGAAACCGTTGCCAATGACCCCATCATCGCCTTCAAGACGGCGTTGTGGTATTGGATGAAAAGTGTCCGACCGGTCATTGGAGAAGGTTTCGGTGCAACAATACGAGCCATTAATGGTGCCCTTGAATGTGATGGTGGAAACCCTGCCACTGTTCAGAAACGTGTTGAATATTTCACTGAATATTGTAACCAACTTGGTGTTGCTCCCGGGGACAATCTCACTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0010262 GO:0016787 GO:0016798 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

276

Amino Acids

29.58

Weight (kDa)

4.63

Isoelectric Point (pI)

30.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54420
fragaria_vesca	FvH4_4g10640
malus_domestica	MD04G1048000.v1.1
prunus_persica	Prupe.1G204000_v2.0.a1 Prupe.1G204700_v2.0.a1 Prupe.1G204800_v2.0.a1
pyrus_communis	pycom04g04190
rosa_chinensis	RchiOBHm_Chr4g0406271 RchiOBHm_Chr7g0219281
rosa_laevigata	RLG00000002299 RLG00000008782
rosa_multiflora	Rmu_sc0005137.1_g000013 Rmu_sc0009785.1_g000018 Rmu_ssc0000456.1_g000006
rosa_roxburghii	Rroxscaffold_3G00240100 Rroxscaffold_5G00351010
rosa_rugosa	Rorug04G0067400 Rorug07G0184100
rosa_samantha	Rh4AG136900 Rh4BG134500 Rh4CG145100 Rh4DG131600 Rh7AG327100 Rh7BG317000 Rh7CG344400 Rh7DG322500
rosa_wichuraiana	Rw4G011100 Rw4G011240 Rw7G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	155, 162, 187, 716
AciI	CCGC	1 cut(s)	153
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	1 cut(s)	84
AcyI	GRCGYC	1 cut(s)	188
AdeI	CACNNNGTG	1 cut(s)	162
AfiI	CCNNNNNNNGG	3 cut(s)	271, 506, 677
AflIII	ACRYGT	2 cut(s)	213, 760
AgeI	ACCGGT	1 cut(s)	670
AgsI	TTSAA	5 cut(s)	250, 550, 634, 725, 767
AjiI	CACGTC	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	5 cut(s)	53, 59, 65, 279, 308
AluI	AGCT	5 cut(s)	53, 59, 65, 279, 308
Alw21I	GWGCWC	1 cut(s)	206
Alw26I	GTCTC	1 cut(s)	407
AlwNI	CAGNNNCTG	1 cut(s)	224
Ama87I	CYCGRG	3 cut(s)	199, 303, 806
AoxI	GGCC	4 cut(s)	173, 262, 267, 556
ApeKI	GCWGC	6 cut(s)	53, 56, 59, 62, 279, 386
ApoI	RAATTY	1 cut(s)	242
AseI	ATTAAT	1 cut(s)	711
AsiGI	ACCGGT	1 cut(s)	670
AspLEI	GCGC	2 cut(s)	190, 284
AspS9I	GGNCC	4 cut(s)	173, 449, 524, 557
AsuC2I	CCSGG	3 cut(s)	160, 807, 808
AsuHPI	GGTGA	1 cut(s)	397
AvaI	CYCGRG	3 cut(s)	199, 303, 806
AvaII	GGWCC	2 cut(s)	449, 524
BaeGI	GKGCMC	1 cut(s)	721
BalI	TGGCCA	1 cut(s)	264
BanI	GGYRCC	4 cut(s)	155, 162, 187, 716
Bbv12I	GWGCWC	1 cut(s)	206
BbvI	GCAGC	6 cut(s)	40, 46, 68, 74, 266, 373
BccI	CCATC	3 cut(s)	440, 629, 725
BceAI	ACGGC	4 cut(s)	160, 201, 571, 654
BcgI	CGANNNNNNTGC	2 cut(s)	562, 596
BciT130I	CCWGG	1 cut(s)	266
BclI	TGATCA	1 cut(s)	337
BcnI	CCSGG	3 cut(s)	160, 807, 808
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	2 cut(s)	207, 826
BfmI	CTRYAG	2 cut(s)	54, 60
BfoI	RGCGCY	1 cut(s)	191
BisI	GCNGC	7 cut(s)	54, 57, 60, 63, 154, 280, 387
BlsI	GCNGC	7 cut(s)	55, 58, 61, 64, 155, 281, 388
Bme1390I	CCNGG	4 cut(s)	160, 266, 807, 808
Bme18I	GGWCC	2 cut(s)	449, 524
BmeT110I	CYCGRG	3 cut(s)	199, 303, 806
BmgBI	CACGTC	1 cut(s)	214
BmgT120I	GGNCC	4 cut(s)	173, 449, 524, 557
BmiI	GGNNCC	6 cut(s)	157, 164, 189, 358, 451, 718
BmrFI	CCNGG	4 cut(s)	160, 266, 807, 808
BpuEI	CTTGAG	2 cut(s)	311, 338
BpuMI	CCSGG	3 cut(s)	160, 807, 808
BsaHI	GRCGYC	1 cut(s)	188
BsaJI	CCNNGG	3 cut(s)	270, 806, 807
BsaWI	WCCGGW	1 cut(s)	670
Bsc4I	CCNNNNNNNGG	3 cut(s)	271, 506, 677
Bse118I	RCCGGY	2 cut(s)	284, 670
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	3 cut(s)	270, 806, 807
BseGI	GGATG	1 cut(s)	660
BseLI	CCNNNNNNNGG	3 cut(s)	271, 506, 677
BseMI	GCAATG	1 cut(s)	12
BseSI	GKGCMC	1 cut(s)	721
BseXI	GCAGC	6 cut(s)	40, 46, 68, 74, 266, 373
BseYI	CCCAGC	3 cut(s)	20, 65, 559
Bsh1285I	CGRYCG	1 cut(s)	671
BshFI	GGCC	4 cut(s)	175, 264, 269, 558
BshNI	GGYRCC	4 cut(s)	155, 162, 187, 716
BshTI	ACCGGT	1 cut(s)	670
BsiEI	CGRYCG	1 cut(s)	671
BsiHKAI	GWGCWC	1 cut(s)	206
BsiHKCI	CYCGRG	3 cut(s)	199, 303, 806
BsiSI	CCGG	5 cut(s)	159, 285, 564, 671, 807
BslFI	GGGAC	1 cut(s)	824
BslI	CCNNNNNNNGG	3 cut(s)	271, 506, 677
BsmAI	GTCTC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	824
BsnI	GGCC	4 cut(s)	175, 264, 269, 558
BsoBI	CYCGRG	3 cut(s)	199, 303, 806
Bsp1286I	GDGCHC	2 cut(s)	206, 721
Bsp143I	GATC	1 cut(s)	337
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	4 cut(s)	175, 264, 269, 558
BspLI	GGNNCC	6 cut(s)	157, 164, 189, 358, 451, 718
BspMAI	CTGCAG	2 cut(s)	58, 64
BspT107I	GGYRCC	4 cut(s)	155, 162, 187, 716
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	2 cut(s)	284, 670
BssAI	RCCGGY	2 cut(s)	284, 670
BssECI	CCNNGG	3 cut(s)	270, 806, 807
BssMI	GATC	1 cut(s)	337
BssNI	GRCGYC	1 cut(s)	188
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	4 cut(s)	467, 537, 607, 751
Bst6I	CTCTTC	1 cut(s)	432
BstACI	GRCGYC	1 cut(s)	188
BstAPI	GCANNNNNTGC	1 cut(s)	162
BstC8I	GCNNGC	3 cut(s)	277, 286, 497
BstDEI	CTNAG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	660
BstH2I	RGCGCY	1 cut(s)	191
BstHHI	GCGC	2 cut(s)	190, 284
BstKTI	GATC	1 cut(s)	340
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	1 cut(s)	337
BstMCI	CGRYCG	1 cut(s)	671
BstMWI	GCNNNNNNNGC	7 cut(s)	59, 62, 162, 261, 281, 285, 395
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	4 cut(s)	158, 264, 805, 806
BstSFI	CTRYAG	2 cut(s)	54, 60
BstSLI	GKGCMC	1 cut(s)	721
BstV1I	GCAGC	6 cut(s)	40, 46, 68, 74, 266, 373
BsuRI	GGCC	4 cut(s)	175, 264, 269, 558
BtgZI	GCGATG	1 cut(s)	610
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	660
BtsIMutI	CAGTG	3 cut(s)	225, 747, 774
Cac8I	GCNNGC	3 cut(s)	277, 286, 497
CaiI	CAGNNNCTG	1 cut(s)	224
CfoI	GCGC	2 cut(s)	190, 284
Cfr10I	RCCGGY	2 cut(s)	284, 670
Cfr13I	GGNCC	4 cut(s)	173, 449, 524, 557
Cfr9I	CCCGGG	1 cut(s)	806
CspAI	ACCGGT	1 cut(s)	670
CviAII	CATG	4 cut(s)	401, 410, 492, 540
DdeI	CTNAG	1 cut(s)	372
DinI	GGCGCC	1 cut(s)	189
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
DraIII	CACNNNGTG	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco32I	GATATC	1 cut(s)	229
Eco47I	GGWCC	2 cut(s)	449, 524
Eco57I	CTGAAG	1 cut(s)	84
Eco88I	CYCGRG	3 cut(s)	199, 303, 806
EcoRI	GAATTC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	264
EcoRV	GATATC	1 cut(s)	229
EgeI	GGCGCC	1 cut(s)	189
EheI	GGCGCC	1 cut(s)	189
FaeI	CATG	4 cut(s)	404, 413, 495, 543
FaqI	GGGAC	1 cut(s)	824
FatI	CATG	4 cut(s)	400, 409, 491, 539
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	7 cut(s)	54, 57, 60, 63, 154, 280, 387
FokI	GGATG	1 cut(s)	667
Fsp4HI	GCNGC	7 cut(s)	54, 57, 60, 63, 154, 280, 387
FspBI	CTAG	2 cut(s)	207, 826
GlaI	GCGC	2 cut(s)	189, 283
GluI	GCNGC	7 cut(s)	54, 57, 60, 63, 154, 280, 387
GsaI	CCCAGC	3 cut(s)	24, 69, 563
HaeII	RGCGCY	1 cut(s)	191
HaeIII	GGCC	4 cut(s)	175, 264, 269, 558
HapII	CCGG	5 cut(s)	159, 285, 564, 671, 807
HhaI	GCGC	2 cut(s)	190, 284
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	4 cut(s)	404, 413, 495, 543
Hin6I	GCGC	2 cut(s)	188, 282
HinP1I	GCGC	2 cut(s)	188, 282
HinfI	GANTC	1 cut(s)	368
HpaII	CCGG	5 cut(s)	159, 285, 564, 671, 807
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188I	TCNGA	3 cut(s)	103, 668, 756
Hpy188III	TCNNGA	4 cut(s)	303, 317, 599, 634
Hpy8I	GTNNAC	1 cut(s)	524
Hpy99I	CGWCG	2 cut(s)	215, 587
HpyAV	CCTTC	3 cut(s)	400, 640, 677
HpyCH4III	ACNGT	4 cut(s)	467, 537, 607, 751
HpyCH4IV	ACGT	2 cut(s)	213, 760
HpyCH4V	TGCA	6 cut(s)	17, 56, 62, 180, 495, 695
HpyF10VI	GCNNNNNNNGC	7 cut(s)	59, 62, 162, 261, 281, 285, 395
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	2 cut(s)	213, 760
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	4 cut(s)	404, 413, 495, 543
HspAI	GCGC	2 cut(s)	188, 282
KasI	GGCGCC	1 cut(s)	187
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	337
LmnI	GCTCC	2 cut(s)	362, 808
Lsp1109I	GCAGC	6 cut(s)	40, 46, 68, 74, 266, 373
MaeI	CTAG	2 cut(s)	207, 826
MaeII	ACGT	2 cut(s)	213, 760
MaeIII	GTNAC	3 cut(s)	232, 403, 785
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	2 cut(s)	238, 449
MhlI	GDGCHC	2 cut(s)	206, 721
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	3 cut(s)	85, 242, 258
MluNI	TGGCCA	1 cut(s)	264
Mly113I	GGCGCC	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	2 cut(s)	556, 691
MnlI	CCTC	5 cut(s)	70, 201, 265, 313, 463
Mox20I	TGGCCA	1 cut(s)	264
MroNI	GCCGGC	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	2 cut(s)	590, 711
Msp20I	TGGCCA	1 cut(s)	264
MspA1I	CMGCKG	2 cut(s)	59, 65
MspI	CCGG	5 cut(s)	159, 285, 564, 671, 807
MspR9I	CCNGG	4 cut(s)	160, 266, 807, 808
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	7 cut(s)	59, 62, 162, 261, 281, 285, 395
NaeI	GCCGGC	1 cut(s)	286
NarI	GGCGCC	1 cut(s)	188
NciI	CCSGG	3 cut(s)	160, 807, 808
NdeII	GATC	1 cut(s)	337
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	4 cut(s)	404, 413, 495, 543
NlaIV	GGNNCC	6 cut(s)	157, 164, 189, 358, 451, 718
NmeAIII	GCCGAG	1 cut(s)	295
NmuCI	GTSAC	2 cut(s)	232, 403
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PdiI	GCCGGC	1 cut(s)	286
PinAI	ACCGGT	1 cut(s)	670
PkrI	GCNGC	7 cut(s)	55, 58, 61, 64, 155, 281, 388
PleI	GAGTC	1 cut(s)	362
PluTI	GGCGCC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	362
PshBI	ATTAAT	1 cut(s)	711
Psp6I	CCWGG	1 cut(s)	264
PspFI	CCCAGC	3 cut(s)	20, 65, 559
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	6 cut(s)	157, 164, 189, 358, 451, 718
PspPI	GGNCC	4 cut(s)	173, 449, 524, 557
PsrI	GAACNNNNNNTAC	2 cut(s)	536, 568
PstI	CTGCAG	2 cut(s)	58, 64
PstNI	CAGNNNCTG	1 cut(s)	224
PvuII	CAGCTG	2 cut(s)	59, 65
SaqAI	TTAA	2 cut(s)	590, 711
SatI	GCNGC	7 cut(s)	54, 57, 60, 63, 154, 280, 387
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	4 cut(s)	173, 449, 524, 557
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	4 cut(s)	160, 266, 807, 808
SduI	GDGCHC	2 cut(s)	206, 721
SetI	ASST	9 cut(s)	55, 61, 67, 216, 281, 310, 314, 688, 763
SfcI	CTRYAG	2 cut(s)	54, 60
SfoI	GGCGCC	1 cut(s)	189
SinI	GGWCC	2 cut(s)	449, 524
SmaI	CCCGGG	1 cut(s)	808
SmlI	CTYRAG	2 cut(s)	317, 326
SmoI	CTYRAG	2 cut(s)	317, 326
Sse9I	AATT	3 cut(s)	85, 242, 258
SsiI	CCGC	1 cut(s)	153
SspDI	GGCGCC	1 cut(s)	187
SspI	AATATT	2 cut(s)	770, 782
SspMI	CTAG	2 cut(s)	207, 826
StyD4I	CCNGG	4 cut(s)	158, 264, 805, 806
TaaI	ACNGT	4 cut(s)	467, 537, 607, 751
TaiI	ACGT	2 cut(s)	216, 763
TaqI	TCGA	1 cut(s)	582
TasI	AATT	3 cut(s)	85, 242, 258
TauI	GCSGC	1 cut(s)	156
Tru1I	TTAA	2 cut(s)	590, 711
Tru9I	TTAA	2 cut(s)	590, 711
TscAI	CASTG	3 cut(s)	225, 754, 781
TseFI	GTSAC	2 cut(s)	232, 403
TseI	GCWGC	6 cut(s)	53, 56, 59, 62, 279, 386
Tsp45I	GTSAC	2 cut(s)	232, 403
TspDTI	ATGAA	2 cut(s)	410, 671
TspGWI	ACGGA	1 cut(s)	600
TspMI	CCCGGG	1 cut(s)	806
TspRI	CASTG	3 cut(s)	225, 754, 781
VpaK11BI	GGWCC	2 cut(s)	449, 524
VspI	ATTAAT	1 cut(s)	711
XapI	RAATTY	1 cut(s)	242
XmaI	CCCGGG	1 cut(s)	806
XspI	CTAG	2 cut(s)	207, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.