Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005235

Physical Location & Seq

Genomic Coordinates Forward (+)

26301675 .. 26302589

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G011100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCTGAAGCAGCAGCTTGTCATTATGGCTGGAATAGCTCTGGTGCTAGTCCTAAGTGTACATGTAGTACAGGGTCAAAATTGTAGTTGTGCTGCAGACCTGTGCTGCAGCCGATACGGTTACTGCGGCACAGGCGATGACTACTGCGGGACGGGATGCCAAGCGGGGCCTTGCAACACGGCGCCTCTACCTCCCAGTACCAGTGATGTTCCGGTGGCCGACATCGTGACCCCGACATTCTTCAACGGGATAATTGATCAAGCGGAAGCAAGCTGCGCCGGGAAGGACTTTTATTCTCGGGCAACGTTCCTTGATGCTCTCGAGTTGTATGATCAGTTTGGTAAGATTGGTTCCCTTGATGATTCTAAACGGGAGATTGCTGCCTTCTTTGCCCACGTCACCCATGAGACTGGACATTTTTGCTACATAGAAGAGATAGACGGAGCATCAAAAGACTACTGCGACGAGACTAACACACAGTATCCATGCAACCCGAACAAAGGTTATTTCGGCCGGGGACCCATCCAACTATCGTGGAACTACAATTACGGTCCGGCCGGAGAGAGTATTGGGTTCGACGGACTAAACGCCCCTGAAAGCGTGGCCAATGACCCACTTATTGCTTTTAAGACTGCACTATGGTACTGGATGAACAATGTTCGGCCGGTCATTGCTGAAGGATTCGGGGAAACTATCCGAGCCATTAACGGTGCGCTCGAATGCGATGGTGGAAACCCTGCTACTGTACAGAAACGCGTCGACTACTACATTGATTATTGTAACCAACTTGGTGTTGCCCCTGGTGACAACCTTACTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0010262 GO:0016787 GO:0016798 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

273

Amino Acids

29.47

Weight (kDa)

4.37

Isoelectric Point (pI)

28.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chitin_bind_1	PF00187	25 - 58	2.7e-08	Chitin recognition protein
Glyco_hydro_19	PF00182	76 - 220	9.2e-38	Chitinase class I
Glyco_hydro_19	PF00182	226 - 273	6.5e-09	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54420
fragaria_vesca	FvH4_4g10640
malus_domestica	MD04G1048000.v1.1
prunus_persica	Prupe.1G204000_v2.0.a1 Prupe.1G204700_v2.0.a1 Prupe.1G204800_v2.0.a1
pyrus_communis	pycom04g04190
rosa_chinensis	RchiOBHm_Chr4g0406271 RchiOBHm_Chr7g0219281
rosa_laevigata	RLG00000002299 RLG00000008782
rosa_multiflora	Rmu_sc0005137.1_g000013 Rmu_sc0009785.1_g000018 Rmu_ssc0000456.1_g000006
rosa_roxburghii	Rroxscaffold_3G00240100 Rroxscaffold_5G00351010
rosa_rugosa	Rorug04G0067400 Rorug07G0184100
rosa_samantha	Rh4AG136900 Rh4BG134500 Rh4CG145100 Rh4DG131600 Rh7AG327100 Rh7BG317000 Rh7CG344400 Rh7DG322500
rosa_wichuraiana	Rw4G011100 Rw4G011240 Rw7G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	181
AccI	GTMKAC	1 cut(s)	759
AccII	CGCG	1 cut(s)	756
AciI	CCGC	4 cut(s)	126, 147, 164, 263
AclI	AACGTT	1 cut(s)	305
AcoI	YGGCCR	5 cut(s)	216, 511, 555, 603, 662
AcuI	CTGAAG	2 cut(s)	26, 696
AcyI	GRCGYC	1 cut(s)	182
AfaI	GTAC	5 cut(s)	60, 69, 199, 644, 747
AfiI	CCNNNNNNNGG	1 cut(s)	500
AflIII	ACRYGT	2 cut(s)	61, 754
AgsI	TTSAA	1 cut(s)	244
AjiI	CACGTC	1 cut(s)	397
AjnI	CCWGG	1 cut(s)	799
AluBI	AGCT	3 cut(s)	16, 38, 273
AluI	AGCT	3 cut(s)	16, 38, 273
Alw26I	GTCTC	2 cut(s)	401, 461
Ama87I	CYCGRG	2 cut(s)	297, 320
AoxI	GGCC	6 cut(s)	167, 216, 511, 555, 603, 662
ApeKI	GCWGC	7 cut(s)	10, 13, 92, 105, 108, 273, 380
AspLEI	GCGC	3 cut(s)	184, 278, 715
AspS9I	GGNCC	3 cut(s)	167, 518, 551
AsuC2I	CCSGG	2 cut(s)	280, 515
AsuHPI	GGTGA	2 cut(s)	391, 815
AvaI	CYCGRG	2 cut(s)	297, 320
AvaII	GGWCC	2 cut(s)	518, 551
BalI	TGGCCA	1 cut(s)	605
BanI	GGYRCC	1 cut(s)	181
BbvI	GCAGC	7 cut(s)	22, 25, 79, 92, 120, 260, 367
BccI	CCATC	2 cut(s)	530, 719
BceAI	ACGGC	1 cut(s)	195
BciT130I	CCWGG	1 cut(s)	801
BciVI	GTATCC	1 cut(s)	492
BclI	TGATCA	2 cut(s)	256, 331
BcnI	CCSGG	2 cut(s)	280, 515
BcoDI	GTCTC	2 cut(s)	401, 461
BfaI	CTAG	2 cut(s)	47, 820
BfmI	CTRYAG	2 cut(s)	93, 106
BfoI	RGCGCY	1 cut(s)	185
BfuI	GTATCC	1 cut(s)	492
BisI	GCNGC	8 cut(s)	11, 14, 93, 106, 109, 127, 274, 381
BlsI	GCNGC	8 cut(s)	12, 15, 94, 107, 110, 128, 275, 382
Bme1390I	CCNGG	3 cut(s)	280, 515, 801
Bme18I	GGWCC	2 cut(s)	518, 551
BmeT110I	CYCGRG	2 cut(s)	297, 320
BmgBI	CACGTC	1 cut(s)	397
BmgT120I	GGNCC	3 cut(s)	167, 518, 551
BmiI	GGNNCC	5 cut(s)	168, 183, 352, 519, 520
BmrFI	CCNGG	3 cut(s)	280, 515, 801
BmrI	ACTGGG	1 cut(s)	189
BmsI	GCATC	3 cut(s)	146, 304, 455
BmuI	ACTGGG	1 cut(s)	189
BpuMI	CCSGG	2 cut(s)	280, 515
BsaHI	GRCGYC	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	514, 799
BsaWI	WCCGGW	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse118I	RCCGGY	1 cut(s)	664
Bse1I	ACTGG	4 cut(s)	195, 201, 415, 650
Bse3DI	GCAATG	1 cut(s)	669
BseBI	CCWGG	1 cut(s)	801
BseDI	CCNNGG	2 cut(s)	514, 799
BseGI	GGATG	3 cut(s)	161, 522, 654
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMI	GCAATG	1 cut(s)	669
BseNI	ACTGG	4 cut(s)	195, 201, 415, 650
BseX3I	CGGCCG	3 cut(s)	511, 555, 662
BseXI	GCAGC	7 cut(s)	22, 25, 79, 92, 120, 260, 367
BsgI	GTGCAG	1 cut(s)	618
Bsh1236I	CGCG	1 cut(s)	756
Bsh1285I	CGRYCG	3 cut(s)	514, 558, 665
BshFI	GGCC	6 cut(s)	169, 218, 513, 557, 605, 664
BshNI	GGYRCC	1 cut(s)	181
BsiEI	CGRYCG	3 cut(s)	514, 558, 665
BsiHKCI	CYCGRG	2 cut(s)	297, 320
BsiSI	CCGG	6 cut(s)	212, 279, 514, 554, 558, 665
BslFI	GGGAC	2 cut(s)	163, 531
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	2 cut(s)	401, 461
BsmFI	GGGAC	2 cut(s)	163, 531
BsmI	GAATGC	1 cut(s)	725
BsnI	GGCC	6 cut(s)	169, 218, 513, 557, 605, 664
BsoBI	CYCGRG	2 cut(s)	297, 320
Bsp1407I	TGTACA	2 cut(s)	58, 745
Bsp143I	GATC	2 cut(s)	256, 331
BspACI	CCGC	4 cut(s)	126, 147, 164, 263
BspANI	GGCC	6 cut(s)	169, 218, 513, 557, 605, 664
BspFNI	CGCG	1 cut(s)	756
BspLI	GGNNCC	5 cut(s)	168, 183, 352, 519, 520
BspMAI	CTGCAG	2 cut(s)	97, 110
BspT107I	GGYRCC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	669
BsrFI	RCCGGY	1 cut(s)	664
BsrGI	TGTACA	2 cut(s)	58, 745
BsrI	ACTGG	4 cut(s)	195, 201, 415, 650
BssAI	RCCGGY	1 cut(s)	664
BssECI	CCNNGG	2 cut(s)	514, 799
BssMI	GATC	2 cut(s)	256, 331
BssNI	GRCGYC	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	801
Bst4CI	ACNGT	5 cut(s)	119, 480, 551, 710, 745
Bst6I	CTCTTC	1 cut(s)	426
BstACI	GRCGYC	1 cut(s)	182
BstAUI	TGTACA	2 cut(s)	58, 745
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	3 cut(s)	161, 522, 654
BstFNI	CGCG	1 cut(s)	756
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	3 cut(s)	184, 278, 715
BstKTI	GATC	2 cut(s)	259, 334
BstMAI	GTCTC	2 cut(s)	401, 461
BstMBI	GATC	2 cut(s)	256, 331
BstMCI	CGRYCG	3 cut(s)	514, 558, 665
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 35, 132, 275, 389
BstNI	CCWGG	1 cut(s)	801
BstNSI	RCATGY	1 cut(s)	65
BstSCI	CCNGG	3 cut(s)	278, 513, 799
BstSFI	CTRYAG	2 cut(s)	93, 106
BstUI	CGCG	1 cut(s)	756
BstV1I	GCAGC	7 cut(s)	22, 25, 79, 92, 120, 260, 367
BstXI	CCANNNNNNTGG	1 cut(s)	410
BstZI	CGGCCG	3 cut(s)	511, 555, 662
BsuI	GTATCC	1 cut(s)	492
BsuRI	GGCC	6 cut(s)	169, 218, 513, 557, 605, 664
BtgZI	GCGATG	2 cut(s)	150, 738
BtrI	CACGTC	1 cut(s)	397
BtsCI	GGATG	3 cut(s)	161, 522, 654
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	271
CfoI	GCGC	3 cut(s)	184, 278, 715
Cfr10I	RCCGGY	1 cut(s)	664
Cfr13I	GGNCC	3 cut(s)	167, 518, 551
CpoI	CGGWCCG	1 cut(s)	551
CseI	GACGC	1 cut(s)	745
Csp6I	GTAC	5 cut(s)	59, 68, 198, 643, 746
CspCI	CAANNNNNGTGG	2 cut(s)	515, 550
CspI	CGGWCCG	1 cut(s)	551
CviAII	CATG	3 cut(s)	62, 404, 486
CviQI	GTAC	5 cut(s)	59, 68, 198, 643, 746
DdeI	CTNAG	1 cut(s)	53
DinI	GGCGCC	1 cut(s)	183
DpnI	GATC	2 cut(s)	258, 333
DpnII	GATC	2 cut(s)	256, 331
EaeI	YGGCCR	5 cut(s)	216, 511, 555, 603, 662
EagI	CGGCCG	3 cut(s)	511, 555, 662
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
EclXI	CGGCCG	3 cut(s)	511, 555, 662
Eco47I	GGWCC	2 cut(s)	518, 551
Eco52I	CGGCCG	3 cut(s)	511, 555, 662
Eco57I	CTGAAG	2 cut(s)	26, 696
Eco88I	CYCGRG	2 cut(s)	297, 320
EcoO109I	RGGNCCY	2 cut(s)	167, 518
EcoRII	CCWGG	1 cut(s)	799
EgeI	GGCGCC	1 cut(s)	183
EheI	GGCGCC	1 cut(s)	183
FaeI	CATG	3 cut(s)	65, 407, 489
FaiI	YATR	7 cut(s)	26, 63, 330, 405, 428, 487, 640
FaqI	GGGAC	2 cut(s)	163, 531
FatI	CATG	3 cut(s)	61, 403, 485
FauI	CCCGC	2 cut(s)	140, 157
FbaI	TGATCA	2 cut(s)	256, 331
FblI	GTMKAC	1 cut(s)	759
Fnu4HI	GCNGC	8 cut(s)	11, 14, 93, 106, 109, 127, 274, 381
FokI	GGATG	3 cut(s)	168, 509, 661
Fsp4HI	GCNGC	8 cut(s)	11, 14, 93, 106, 109, 127, 274, 381
FspBI	CTAG	2 cut(s)	47, 820
GlaI	GCGC	3 cut(s)	183, 277, 714
GluI	GCNGC	8 cut(s)	11, 14, 93, 106, 109, 127, 274, 381
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	6 cut(s)	169, 218, 513, 557, 605, 664
HapII	CCGG	6 cut(s)	212, 279, 514, 554, 558, 665
HgaI	GACGC	1 cut(s)	745
HhaI	GCGC	3 cut(s)	184, 278, 715
Hin1I	GRCGYC	1 cut(s)	182
Hin1II	CATG	3 cut(s)	65, 407, 489
Hin6I	GCGC	3 cut(s)	182, 276, 713
HinP1I	GCGC	3 cut(s)	182, 276, 713
HincII	GTYRAC	1 cut(s)	760
HindII	GTYRAC	1 cut(s)	760
HinfI	GANTC	2 cut(s)	362, 681
HpaII	CCGG	6 cut(s)	212, 279, 514, 554, 558, 665
HphI	GGTGA	2 cut(s)	391, 815
Hpy166II	GTNNAC	2 cut(s)	59, 760
Hpy188I	TCNGA	1 cut(s)	698
Hpy188III	TCNNGA	2 cut(s)	226, 320
Hpy8I	GTNNAC	2 cut(s)	59, 760
Hpy99I	CGWCG	3 cut(s)	467, 581, 761
HpyAV	CCTTC	3 cut(s)	277, 394, 671
HpyCH4III	ACNGT	5 cut(s)	119, 480, 551, 710, 745
HpyCH4IV	ACGT	2 cut(s)	305, 396
HpyCH4V	TGCA	5 cut(s)	95, 108, 174, 489, 635
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 35, 132, 275, 389
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	2 cut(s)	305, 396
Hsp92I	GRCGYC	1 cut(s)	182
Hsp92II	CATG	3 cut(s)	65, 407, 489
HspAI	GCGC	3 cut(s)	182, 276, 713
KasI	GGCGCC	1 cut(s)	181
KflI	GGGWCCC	1 cut(s)	518
Ksp22I	TGATCA	2 cut(s)	256, 331
Kzo9I	GATC	2 cut(s)	256, 331
LmnI	GCTCC	1 cut(s)	443
Lsp1109I	GCAGC	7 cut(s)	22, 25, 79, 92, 120, 260, 367
LweI	GCATC	3 cut(s)	146, 304, 455
MaeI	CTAG	2 cut(s)	47, 820
MaeII	ACGT	2 cut(s)	305, 396
MaeIII	GTNAC	5 cut(s)	119, 226, 397, 779, 803
MalI	GATC	2 cut(s)	258, 333
MboI	GATC	2 cut(s)	256, 331
MboII	GAAGA	2 cut(s)	232, 443
MlsI	TGGCCA	1 cut(s)	605
MluCI	AATT	3 cut(s)	79, 252, 544
MluI	ACGCGT	1 cut(s)	754
MluNI	TGGCCA	1 cut(s)	605
Mly113I	GGCGCC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	2 cut(s)	195, 201
Mox20I	TGGCCA	1 cut(s)	605
MscI	TGGCCA	1 cut(s)	605
MseI	TTAA	2 cut(s)	627, 705
Msp20I	TGGCCA	1 cut(s)	605
MspI	CCGG	6 cut(s)	212, 279, 514, 554, 558, 665
MspR9I	CCNGG	3 cut(s)	280, 515, 801
Mva1269I	GAATGC	1 cut(s)	725
MvaI	CCWGG	1 cut(s)	801
MvnI	CGCG	1 cut(s)	756
MwoI	GCNNNNNNNGC	5 cut(s)	10, 35, 132, 275, 389
NarI	GGCGCC	1 cut(s)	182
NciI	CCSGG	2 cut(s)	280, 515
NdeII	GATC	2 cut(s)	256, 331
NlaIII	CATG	3 cut(s)	65, 407, 489
NlaIV	GGNNCC	5 cut(s)	168, 183, 352, 519, 520
NmuCI	GTSAC	3 cut(s)	226, 397, 803
NspI	RCATGY	1 cut(s)	65
PaeR7I	CTCGAG	1 cut(s)	320
PciI	ACATGT	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	1 cut(s)	714
PctI	GAATGC	1 cut(s)	725
PfeI	GAWTC	2 cut(s)	362, 681
PkrI	GCNGC	8 cut(s)	12, 15, 94, 107, 110, 128, 275, 382
PluTI	GGCGCC	1 cut(s)	185
PpuMI	RGGWCCY	1 cut(s)	518
PscI	ACATGT	1 cut(s)	61
Psp1406I	AACGTT	1 cut(s)	305
Psp5II	RGGWCCY	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	799
PspGI	CCWGG	1 cut(s)	799
PspN4I	GGNNCC	5 cut(s)	168, 183, 352, 519, 520
PspPI	GGNCC	3 cut(s)	167, 518, 551
PspPPI	RGGWCCY	1 cut(s)	518
PsrI	GAACNNNNNNTAC	4 cut(s)	334, 366, 530, 562
PstI	CTGCAG	2 cut(s)	97, 110
RsaI	GTAC	5 cut(s)	60, 69, 199, 644, 747
RsaNI	GTAC	5 cut(s)	59, 68, 198, 643, 746
Rsr2I	CGGWCCG	1 cut(s)	551
RsrII	CGGWCCG	1 cut(s)	551
SalI	GTCGAC	1 cut(s)	758
SaqAI	TTAA	2 cut(s)	627, 705
SatI	GCNGC	8 cut(s)	11, 14, 93, 106, 109, 127, 274, 381
Sau3AI	GATC	2 cut(s)	256, 331
Sau96I	GGNCC	3 cut(s)	167, 518, 551
ScrFI	CCNGG	3 cut(s)	280, 515, 801
SetI	ASST	9 cut(s)	18, 40, 102, 193, 275, 308, 399, 505, 813
SfaNI	GCATC	3 cut(s)	146, 304, 455
SfcI	CTRYAG	2 cut(s)	93, 106
SfoI	GGCGCC	1 cut(s)	183
Sfr274I	CTCGAG	1 cut(s)	320
SinI	GGWCC	2 cut(s)	518, 551
SlaI	CTCGAG	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	3 cut(s)	79, 252, 544
SsiI	CCGC	4 cut(s)	126, 147, 164, 263
SspDI	GGCGCC	1 cut(s)	181
SspMI	CTAG	2 cut(s)	47, 820
StyD4I	CCNGG	3 cut(s)	278, 513, 799
TaaI	ACNGT	5 cut(s)	119, 480, 551, 710, 745
TaiI	ACGT	2 cut(s)	308, 399
TaqI	TCGA	4 cut(s)	321, 576, 717, 759
TasI	AATT	3 cut(s)	79, 252, 544
TatI	WGTACW	3 cut(s)	58, 67, 745
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	2 cut(s)	362, 681
Tru1I	TTAA	2 cut(s)	627, 705
Tru9I	TTAA	2 cut(s)	627, 705
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	3 cut(s)	226, 397, 803
TseI	GCWGC	7 cut(s)	10, 13, 92, 105, 108, 273, 380
Tsp45I	GTSAC	3 cut(s)	226, 397, 803
TspDTI	ATGAA	1 cut(s)	665
TspGWI	ACGGA	2 cut(s)	456, 594
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	2 cut(s)	518, 551
XceI	RCATGY	1 cut(s)	65
XhoI	CTCGAG	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	759
XspI	CTAG	2 cut(s)	47, 820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.