Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005235

Physical Location & Seq

Genomic Coordinates Forward (+)

3780483 .. 3781943

Gene Structure 1461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04190.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCCAATAGGGCCTTGTACCCCGCGTGGTTTAAGTCCTCCACTTTCATGCCAATCAATCACAGCTTCAGAAATCAATCAAATGGCGGCCAGAAGCATAATATTAACCCTTTTAATTGTAGCCACTGGAGTCCTGTCCGGCTATGCAGACGCTCAGAACTGTGGCTGTGCCGCGAACCTGTGCTGTAGCCAATACGGCTACTGTGGCACAGACGATGCCTACTGCGGCACAGGCTGCCAGTCAGGGCCTTGCAAGACGCCGGCTCAAACACCGAGTACCAACGATGTGGTGGTGGCGGATATTGTAACGCCCGAATTCTTCAACGGGATAATTGATCAGGCGGACGCAAGTTGTGCCGGCAAGAACTTTTACTCCCGAGCTACCTTCCTTGAAGCTCTCAATTCCTATACTCAGTTCGGTAGGATTGGTTCCGTTGACGACTCTAAGCGTGAGATTGCTGCTTTCTTTGCCCATGTCACCCACGAGACTGGACATTTTTGCTACATAGAAGAGATAGATGGAGCCTCAAAAGACTACTGTGATGAGAACAACACACAATATCCATGCAACCCAAACAAAGGGTACTATGGGCGTGGACCTATCCAACTATCATGGAACTTCAACTACGGTCCGGCCGGAGAGAGCATTGGGTTTGATGGACTAAACTCTCCTGAAACCGTGGCCAACGACCCTGTCATTGCTTTCAAAACGGCGCTGTGGTACTGGATGAACAACGTTAGGCCGGTCATCGGTGAAGGTTTCGGTGCAACCATTCGAGCCATCAATGGTGCGCTCGAATGCGATGGTGGAAATCCTGCTACAGTTCAGAGACGTGTTGAGTATTACACAGAATATTGTAACCAACTTGGTGTTGCTCCTGGTGACAATCTCACCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0010262 GO:0016787 GO:0016798 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

300

Amino Acids

32.03

Weight (kDa)

4.49

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54420
fragaria_vesca	FvH4_4g10640
malus_domestica	MD04G1048000.v1.1
prunus_persica	Prupe.1G204000_v2.0.a1 Prupe.1G204700_v2.0.a1 Prupe.1G204800_v2.0.a1
pyrus_communis	pycom04g04190
rosa_chinensis	RchiOBHm_Chr4g0406271 RchiOBHm_Chr7g0219281
rosa_laevigata	RLG00000002299 RLG00000008782
rosa_multiflora	Rmu_sc0005137.1_g000013 Rmu_sc0009785.1_g000018 Rmu_ssc0000456.1_g000006
rosa_roxburghii	Rroxscaffold_3G00240100 Rroxscaffold_5G00351010
rosa_rugosa	Rorug04G0067400 Rorug07G0184100
rosa_samantha	Rh4AG136900 Rh4BG134500 Rh4CG145100 Rh4DG131600 Rh7AG327100 Rh7BG317000 Rh7CG344400 Rh7DG322500
rosa_wichuraiana	Rw4G011100 Rw4G011240 Rw7G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	25, 173
AciI	CCGC	6 cut(s)	23, 86, 171, 225, 296, 341
AclI	AACGTT	1 cut(s)	735
AcoI	YGGCCR	3 cut(s)	87, 633, 681
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	257
AfaI	GTAC	4 cut(s)	19, 277, 584, 722
AfiI	CCNNNNNNNGG	2 cut(s)	578, 749
AflIII	ACRYGT	1 cut(s)	832
AgsI	TTSAA	4 cut(s)	322, 392, 622, 706
AjiI	CACGTC	1 cut(s)	833
AjnI	CCWGG	1 cut(s)	877
AloI	GAACNNNNNNTCC	2 cut(s)	356, 388
AluBI	AGCT	3 cut(s)	65, 380, 395
AluI	AGCT	3 cut(s)	65, 380, 395
Alw26I	GTCTC	2 cut(s)	479, 823
Ama87I	CYCGRG	1 cut(s)	375
AoxI	GGCC	6 cut(s)	11, 87, 245, 633, 681, 740
ApeKI	GCWGC	2 cut(s)	234, 458
ApoI	RAATTY	1 cut(s)	314
AspLEI	GCGC	2 cut(s)	715, 793
AspS9I	GGNCC	4 cut(s)	11, 245, 596, 629
AsuHPI	GGTGA	4 cut(s)	469, 764, 883, 893
AvaI	CYCGRG	1 cut(s)	375
AvaII	GGWCC	2 cut(s)	596, 629
BalI	TGGCCA	1 cut(s)	683
BauI	CACGAG	1 cut(s)	482
BbvI	GCAGC	2 cut(s)	221, 445
BccI	CCATC	4 cut(s)	512, 650, 788, 797
BceAI	ACGGC	2 cut(s)	211, 726
BciT130I	CCWGG	1 cut(s)	879
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	479, 823
BfaI	CTAG	1 cut(s)	898
BfmI	CTRYAG	2 cut(s)	184, 819
BfoI	RGCGCY	1 cut(s)	716
BglI	GCCNNNNNGGC	2 cut(s)	10, 195
BisI	GCNGC	5 cut(s)	87, 171, 226, 235, 459
BlsI	GCNGC	5 cut(s)	88, 172, 227, 236, 460
Bme1390I	CCNGG	1 cut(s)	879
Bme18I	GGWCC	2 cut(s)	596, 629
BmeT110I	CYCGRG	1 cut(s)	375
BmgBI	CACGTC	1 cut(s)	833
BmgT120I	GGNCC	4 cut(s)	11, 245, 596, 629
BmiI	GGNNCC	2 cut(s)	430, 523
BmrFI	CCNGG	1 cut(s)	879
BmsI	GCATC	1 cut(s)	205
BpmI	CTGGAG	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	678
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bsc4I	CCNNNNNNNGG	2 cut(s)	578, 749
Bse118I	RCCGGY	3 cut(s)	259, 356, 742
Bse1I	ACTGG	4 cut(s)	130, 238, 493, 728
Bse3DI	GCAATG	1 cut(s)	696
BseBI	CCWGG	1 cut(s)	879
BseDI	CCNNGG	1 cut(s)	678
BseGI	GGATG	1 cut(s)	732
BseLI	CCNNNNNNNGG	2 cut(s)	578, 749
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	2 cut(s)	167, 425
BseNI	ACTGG	4 cut(s)	130, 238, 493, 728
BseX3I	CGGCCG	1 cut(s)	633
BseXI	GCAGC	2 cut(s)	221, 445
Bsh1236I	CGCG	2 cut(s)	25, 173
Bsh1285I	CGRYCG	1 cut(s)	636
BshFI	GGCC	6 cut(s)	13, 89, 247, 635, 683, 742
BsiEI	CGRYCG	1 cut(s)	636
BsiHKCI	CYCGRG	1 cut(s)	375
BsiSI	CCGG	6 cut(s)	138, 260, 357, 632, 636, 743
BslI	CCNNNNNNNGG	2 cut(s)	578, 749
BsmAI	GTCTC	2 cut(s)	479, 823
BsmBI	CGTCTC	1 cut(s)	823
BsmI	GAATGC	1 cut(s)	803
BsnI	GGCC	6 cut(s)	13, 89, 247, 635, 683, 742
BsoBI	CYCGRG	1 cut(s)	375
Bsp143I	GATC	1 cut(s)	334
BspACI	CCGC	6 cut(s)	23, 86, 171, 225, 296, 341
BspANI	GGCC	6 cut(s)	13, 89, 247, 635, 683, 742
BspCNI	CTCAG	2 cut(s)	166, 424
BspFNI	CGCG	2 cut(s)	25, 173
BspLI	GGNNCC	2 cut(s)	430, 523
BsrDI	GCAATG	1 cut(s)	696
BsrFI	RCCGGY	3 cut(s)	259, 356, 742
BsrI	ACTGG	4 cut(s)	130, 238, 493, 728
BssAI	RCCGGY	3 cut(s)	259, 356, 742
BssECI	CCNNGG	1 cut(s)	678
BssMI	GATC	1 cut(s)	334
BssNI	GRCGYC	1 cut(s)	257
BssSI	CACGAG	1 cut(s)	482
Bst2BI	CACGAG	1 cut(s)	482
Bst2UI	CCWGG	1 cut(s)	879
Bst4CI	ACNGT	6 cut(s)	161, 203, 539, 629, 679, 823
Bst6I	CTCTTC	1 cut(s)	504
BstACI	GRCGYC	1 cut(s)	257
BstAPI	GCANNNNNTGC	2 cut(s)	234, 353
BstC8I	GCNNGC	2 cut(s)	261, 358
BstDEI	CTNAG	3 cut(s)	153, 411, 444
BstDSI	CCRYGG	1 cut(s)	678
BstF5I	GGATG	1 cut(s)	732
BstFNI	CGCG	2 cut(s)	25, 173
BstH2I	RGCGCY	1 cut(s)	716
BstHHI	GCGC	2 cut(s)	715, 793
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	2 cut(s)	479, 823
BstMBI	GATC	1 cut(s)	334
BstMCI	CGRYCG	1 cut(s)	636
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 195, 204, 231, 234, 353, 467
BstNI	CCWGG	1 cut(s)	879
BstSCI	CCNGG	1 cut(s)	877
BstSFI	CTRYAG	2 cut(s)	184, 819
BstUI	CGCG	2 cut(s)	25, 173
BstV1I	GCAGC	2 cut(s)	221, 445
BstXI	CCANNNNNNTGG	2 cut(s)	286, 488
BstZI	CGGCCG	1 cut(s)	633
BsuRI	GGCC	6 cut(s)	13, 89, 247, 635, 683, 742
BtgI	CCRYGG	1 cut(s)	678
BtgZI	GCGATG	1 cut(s)	816
BtrI	CACGTC	1 cut(s)	833
BtsCI	GGATG	1 cut(s)	732
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	261, 358
CfoI	GCGC	2 cut(s)	715, 793
Cfr10I	RCCGGY	3 cut(s)	259, 356, 742
Cfr13I	GGNCC	4 cut(s)	11, 245, 596, 629
CpoI	CGGWCCG	1 cut(s)	629
CseI	GACGC	3 cut(s)	158, 265, 353
Csp6I	GTAC	4 cut(s)	18, 276, 583, 721
CspI	CGGWCCG	1 cut(s)	629
CviAII	CATG	4 cut(s)	48, 473, 564, 612
CviQI	GTAC	4 cut(s)	18, 276, 583, 721
DdeI	CTNAG	3 cut(s)	153, 411, 444
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
EaeI	YGGCCR	3 cut(s)	87, 633, 681
EagI	CGGCCG	1 cut(s)	633
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
EciI	GGCGGA	2 cut(s)	311, 356
EclXI	CGGCCG	1 cut(s)	633
Eco47I	GGWCC	2 cut(s)	596, 629
Eco52I	CGGCCG	1 cut(s)	633
Eco57I	CTGAAG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	375
EcoO109I	RGGNCCY	2 cut(s)	11, 245
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	877
Esp3I	CGTCTC	1 cut(s)	823
FaeI	CATG	4 cut(s)	51, 476, 567, 615
FaiI	YATR	9 cut(s)	49, 98, 144, 408, 474, 506, 565, 588, 613
FatI	CATG	4 cut(s)	47, 472, 563, 611
FauI	CCCGC	1 cut(s)	30
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	5 cut(s)	87, 171, 226, 235, 459
FokI	GGATG	1 cut(s)	739
Fsp4HI	GCNGC	5 cut(s)	87, 171, 226, 235, 459
FspBI	CTAG	1 cut(s)	898
GlaI	GCGC	2 cut(s)	714, 792
GluI	GCNGC	5 cut(s)	87, 171, 226, 235, 459
GsuI	CTGGAG	1 cut(s)	147
HaeII	RGCGCY	1 cut(s)	716
HaeIII	GGCC	6 cut(s)	13, 89, 247, 635, 683, 742
HapII	CCGG	6 cut(s)	138, 260, 357, 632, 636, 743
HgaI	GACGC	3 cut(s)	158, 265, 353
HhaI	GCGC	2 cut(s)	715, 793
Hin1I	GRCGYC	1 cut(s)	257
Hin1II	CATG	4 cut(s)	51, 476, 567, 615
Hin6I	GCGC	2 cut(s)	713, 791
HinP1I	GCGC	2 cut(s)	713, 791
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	2 cut(s)	129, 440
HpaII	CCGG	6 cut(s)	138, 260, 357, 632, 636, 743
HphI	GGTGA	4 cut(s)	469, 764, 883, 893
Hpy166II	GTNNAC	2 cut(s)	436, 596
Hpy188I	TCNGA	3 cut(s)	70, 156, 828
Hpy188III	TCNNGA	2 cut(s)	375, 671
Hpy8I	GTNNAC	2 cut(s)	436, 596
HpyAV	CCTTC	2 cut(s)	394, 749
HpyCH4III	ACNGT	6 cut(s)	161, 203, 539, 629, 679, 823
HpyCH4IV	ACGT	2 cut(s)	735, 832
HpyCH4V	TGCA	4 cut(s)	146, 252, 567, 767
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 195, 204, 231, 234, 353, 467
HpyF3I	CTNAG	3 cut(s)	153, 411, 444
HpySE526I	ACGT	2 cut(s)	735, 832
Hsp92I	GRCGYC	1 cut(s)	257
Hsp92II	CATG	4 cut(s)	51, 476, 567, 615
HspAI	GCGC	2 cut(s)	713, 791
KroI	GCCGGC	2 cut(s)	259, 356
KroNI	GCCGGC	2 cut(s)	261, 358
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	334
LmnI	GCTCC	2 cut(s)	521, 880
Lsp1109I	GCAGC	2 cut(s)	221, 445
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	898
MaeII	ACGT	2 cut(s)	735, 832
MaeIII	GTNAC	4 cut(s)	304, 475, 857, 881
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	2 cut(s)	310, 521
MlsI	TGGCCA	1 cut(s)	683
MluCI	AATT	4 cut(s)	114, 314, 330, 400
MluNI	TGGCCA	1 cut(s)	683
MlyI	GAGTC	2 cut(s)	138, 434
MmeI	TCCRAC	1 cut(s)	628
MnlI	CCTC	2 cut(s)	48, 535
Mox20I	TGGCCA	1 cut(s)	683
MroNI	GCCGGC	2 cut(s)	259, 356
MscI	TGGCCA	1 cut(s)	683
MseI	TTAA	3 cut(s)	32, 104, 113
MslI	CAYNNNNRTG	1 cut(s)	46
Msp20I	TGGCCA	1 cut(s)	683
MspI	CCGG	6 cut(s)	138, 260, 357, 632, 636, 743
MspR9I	CCNGG	1 cut(s)	879
Mva1269I	GAATGC	1 cut(s)	803
MvaI	CCWGG	1 cut(s)	879
MvnI	CGCG	2 cut(s)	25, 173
MwoI	GCNNNNNNNGC	7 cut(s)	10, 195, 204, 231, 234, 353, 467
NaeI	GCCGGC	2 cut(s)	261, 358
NdeII	GATC	1 cut(s)	334
NgoMIV	GCCGGC	2 cut(s)	259, 356
NlaIII	CATG	4 cut(s)	51, 476, 567, 615
NlaIV	GGNNCC	2 cut(s)	430, 523
NmuCI	GTSAC	2 cut(s)	475, 881
PctI	GAATGC	1 cut(s)	803
PdiI	GCCGGC	2 cut(s)	261, 358
PflFI	GACNNNGTC	1 cut(s)	692
PkrI	GCNGC	5 cut(s)	88, 172, 227, 236, 460
PleI	GAGTC	2 cut(s)	137, 434
PpsI	GAGTC	2 cut(s)	137, 434
Psp1406I	AACGTT	1 cut(s)	735
Psp6I	CCWGG	1 cut(s)	877
PspGI	CCWGG	1 cut(s)	877
PspN4I	GGNNCC	2 cut(s)	430, 523
PspPI	GGNCC	4 cut(s)	11, 245, 596, 629
PsrI	GAACNNNNNNTAC	4 cut(s)	412, 444, 608, 640
PsyI	GACNNNGTC	1 cut(s)	692
RsaI	GTAC	4 cut(s)	19, 277, 584, 722
RsaNI	GTAC	4 cut(s)	18, 276, 583, 721
RseI	CAYNNNNRTG	1 cut(s)	46
Rsr2I	CGGWCCG	1 cut(s)	629
RsrII	CGGWCCG	1 cut(s)	629
SaqAI	TTAA	3 cut(s)	32, 104, 113
SatI	GCNGC	5 cut(s)	87, 171, 226, 235, 459
Sau3AI	GATC	1 cut(s)	334
Sau96I	GGNCC	4 cut(s)	11, 245, 596, 629
SchI	GAGTC	2 cut(s)	138, 434
ScrFI	CCNGG	1 cut(s)	879
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	2 cut(s)	184, 819
SinI	GGWCC	2 cut(s)	596, 629
SmiMI	CAYNNNNRTG	1 cut(s)	46
Sse9I	AATT	4 cut(s)	114, 314, 330, 400
SsiI	CCGC	6 cut(s)	23, 86, 171, 225, 296, 341
SspI	AATATT	2 cut(s)	102, 854
SspMI	CTAG	1 cut(s)	898
StyD4I	CCNGG	1 cut(s)	877
TaaI	ACNGT	6 cut(s)	161, 203, 539, 629, 679, 823
TaiI	ACGT	2 cut(s)	738, 835
TaqI	TCGA	2 cut(s)	775, 795
TasI	AATT	4 cut(s)	114, 314, 330, 400
TauI	GCSGC	3 cut(s)	89, 173, 228
Tru1I	TTAA	3 cut(s)	32, 104, 113
Tru9I	TTAA	3 cut(s)	32, 104, 113
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	2 cut(s)	475, 881
TseI	GCWGC	2 cut(s)	234, 458
Tsp45I	GTSAC	2 cut(s)	475, 881
TspDTI	ATGAA	2 cut(s)	36, 743
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	1 cut(s)	130
Tth111I	GACNNNGTC	1 cut(s)	692
VpaK11BI	GGWCC	2 cut(s)	596, 629
XapI	RAATTY	1 cut(s)	314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XspI	CTAG	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.