Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005235

Physical Location & Seq

Genomic Coordinates Forward (+)

10442201 .. 10442642

Gene Structure 442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0067400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGGAGGCATCAAAGAAATTCGTGATGCTGCTTTAGCTTATTACCATAATTTGTCTGAAGAGCAAAAGCACAAGGTGCATACCTTTTTTCAAGAAATTGATACAGATGGTGATGGAACAATAACCATGGAGGAGTTCAAGCAGAAGTATGAAGGTAGTTTCGGCGACAATGTCAACCGTACCTTCCAGGAGCTAGACAAAAATGGAGATGGCAGTTTGGATTTTGAGGAATCTATCACTCTTTACTACTCTTTTAAGGCCCGGAGGACCATTAGTTGCGATGGATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0010262 GO:0016787 GO:0016798 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

96

Amino Acids

11.03

Weight (kDa)

4.72

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	18 - 50	1.7e-06	EF-hand domain pair
EF-hand_1	PF00036	26 - 48	1.3e-06	EF hand domain
EF-hand_5	PF13202	29 - 48	7.5e-08	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54420
fragaria_vesca	FvH4_4g10640
malus_domestica	MD04G1048000.v1.1
prunus_persica	Prupe.1G204000_v2.0.a1 Prupe.1G204700_v2.0.a1 Prupe.1G204800_v2.0.a1
pyrus_communis	pycom04g04190
rosa_chinensis	RchiOBHm_Chr4g0406271 RchiOBHm_Chr7g0219281
rosa_laevigata	RLG00000002299 RLG00000008782
rosa_multiflora	Rmu_sc0005137.1_g000013 Rmu_sc0009785.1_g000018 Rmu_ssc0000456.1_g000006
rosa_roxburghii	Rroxscaffold_3G00240100 Rroxscaffold_5G00351010
rosa_rugosa	Rorug04G0067400 Rorug07G0184100
rosa_samantha	Rh4AG136900 Rh4BG134500 Rh4CG145100 Rh4DG131600 Rh7AG327100 Rh7BG317000 Rh7CG344400 Rh7DG322500
rosa_wichuraiana	Rw4G011100 Rw4G011240 Rw7G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	76
AfaI	GTAC	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	92, 139
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	2 cut(s)	38, 193
AluI	AGCT	2 cut(s)	38, 193
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	259, 267
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	4 cut(s)	101, 107, 203, 275
BciT130I	CCWGG	1 cut(s)	188
BcnI	CCSGG	1 cut(s)	262
BfaI	CTAG	1 cut(s)	194
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	188, 262
Bme18I	GGWCC	1 cut(s)	267
BmgT120I	GGNCC	2 cut(s)	259, 267
BmrFI	CCNGG	2 cut(s)	188, 262
BmsI	GCATC	3 cut(s)	16, 18, 275
BpuMI	CCSGG	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	262
BsnI	GGCC	1 cut(s)	260
Bsp19I	CCATGG	1 cut(s)	126
BspANI	GGCC	1 cut(s)	260
BspQI	GCTCTTC	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	76
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	290
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 76, 285
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	2 cut(s)	186, 260
BstV1I	GCAGC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	260
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	290
Cfr13I	GGNCC	2 cut(s)	259, 267
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	3 cut(s)	38, 193, 260
CviKI_1	RGCY	3 cut(s)	38, 193, 260
CviQI	GTAC	1 cut(s)	180
DraIII	CACNNNGTG	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	130
FaiI	YATR	4 cut(s)	48, 81, 128, 150
FatI	CATG	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	260
HapII	CCGG	1 cut(s)	262
Hin1II	CATG	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	1 cut(s)	230
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	2 cut(s)	23, 92
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	2 cut(s)	146, 193
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	1 cut(s)	79
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 76, 285
Hsp92II	CATG	1 cut(s)	130
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	3 cut(s)	173, 200, 275
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	3 cut(s)	16, 18, 275
MaeI	CTAG	1 cut(s)	194
MboII	GAAGA	1 cut(s)	71
MluCI	AATT	3 cut(s)	18, 49, 96
MnlI	CCTC	3 cut(s)	124, 220, 258
MseI	TTAA	1 cut(s)	255
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	2 cut(s)	188, 262
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	3 cut(s)	35, 76, 285
NciI	CCSGG	1 cut(s)	262
NcoI	CCATGG	1 cut(s)	126
NlaIII	CATG	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	230
PflFI	GACNNNGTC	1 cut(s)	170
PfoI	TCCNGGA	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspPI	GGNCC	2 cut(s)	259, 267
PsyI	GACNNNGTC	1 cut(s)	170
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	1 cut(s)	30
Sau96I	GGNCC	2 cut(s)	259, 267
ScrFI	CCNGG	2 cut(s)	188, 262
SetI	ASST	6 cut(s)	40, 78, 86, 157, 185, 195
SfaNI	GCATC	3 cut(s)	16, 18, 275
SinI	GGWCC	1 cut(s)	267
Sse9I	AATT	3 cut(s)	18, 49, 96
SspMI	CTAG	1 cut(s)	194
StyD4I	CCNGG	2 cut(s)	186, 260
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	179
TasI	AATT	3 cut(s)	18, 49, 96
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	165
Tth111I	GACNNNGTC	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	267
XapI	RAATTY	1 cut(s)	18
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.