Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005235

Physical Location & Seq

Genomic Coordinates Reverse (-)

20525685 .. 20527383

Gene Structure 1699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G204800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCTCAAATCACTGTACCCAGCAACATATTTCTAACCCTTATTATTGTAGCTGCAGCTGTAGCTGGGTATGTGGAGGCTCAAAGCCCGAGCACTAGCGACGTGTCGGTGGCTGATATCGTCACGCCCGAATTCTTCAACGGCATAATTGGCCAGGCCGATGCAAGCTGTGCCGGCAAGAACTTTTATTCCCGAGCTACCTTTCTTGAGGCTCTCAAGTCTTATGATCAGTTCGGTAAGATTGGTTCCATTGATGACTCTAAGCGTGAGATTGCTGCCTTCTTTGCCCATGTCACCCATGAGACTTTTCATTTCTGCTACATAGAAGAGATAGATGGACCCTCAAAGGACTACTGTGATGAGACCAACACACAATATCCATGCAAGTCAAACAAGGGCTATTACGGGCGTGGACCAATCCAACTATCATGGAACTTCAACTATGGCCCAGCAGGAGAGAGCATTGGCTTTGACGGATTAAACTCTCCTGAAACCGTTGCCAATGACCCTATCATCGCCTTCAAGACGGCATTGTGGTATTGGATGACCCATGTCCGACCGGTCATCGGAGAAGGTTTCGGTGCAACAATACGAGCCATTAATGGTGCCCTTGAATGTGATGGTGGAAACCCTGATACTGTTCAGAAACGTGTTGAGTATTTCACTGAATATTGCAACCAACTTGGTATTGCTCCCGGGGACAATCTCACTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0010262 GO:0016787 GO:0016798 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

239

Amino Acids

25.96

Weight (kDa)

4.59

Isoelectric Point (pI)

34.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54420
fragaria_vesca	FvH4_4g10640
malus_domestica	MD04G1048000.v1.1
prunus_persica	Prupe.1G204000_v2.0.a1 Prupe.1G204700_v2.0.a1 Prupe.1G204800_v2.0.a1
pyrus_communis	pycom04g04190
rosa_chinensis	RchiOBHm_Chr4g0406271 RchiOBHm_Chr7g0219281
rosa_laevigata	RLG00000002299 RLG00000008782
rosa_multiflora	Rmu_sc0005137.1_g000013 Rmu_sc0009785.1_g000018 Rmu_ssc0000456.1_g000006
rosa_roxburghii	Rroxscaffold_3G00240100 Rroxscaffold_5G00351010
rosa_rugosa	Rorug04G0067400 Rorug07G0184100
rosa_samantha	Rh4AG136900 Rh4BG134500 Rh4CG145100 Rh4DG131600 Rh7AG327100 Rh7BG317000 Rh7CG344400 Rh7DG322500
rosa_wichuraiana	Rw4G011100 Rw4G011240 Rw7G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	605
AcoI	YGGCCR	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	131
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	1 cut(s)	566
AflIII	ACRYGT	2 cut(s)	102, 649
AgeI	ACCGGT	1 cut(s)	559
AgsI	TTSAA	4 cut(s)	139, 439, 523, 614
AjiI	CACGTC	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	153
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	5 cut(s)	53, 59, 65, 168, 197
AluI	AGCT	5 cut(s)	53, 59, 65, 168, 197
Alw21I	GWGCWC	1 cut(s)	95
Alw26I	GTCTC	2 cut(s)	296, 356
Ama87I	CYCGRG	3 cut(s)	88, 192, 695
AoxI	GGCC	3 cut(s)	151, 156, 445
ApeKI	GCWGC	3 cut(s)	53, 56, 275
ApoI	RAATTY	1 cut(s)	131
AseI	ATTAAT	1 cut(s)	600
AsiGI	ACCGGT	1 cut(s)	559
AspS9I	GGNCC	3 cut(s)	338, 413, 446
AsuC2I	CCSGG	2 cut(s)	696, 697
AsuHPI	GGTGA	1 cut(s)	286
AvaI	CYCGRG	3 cut(s)	88, 192, 695
AvaII	GGWCC	2 cut(s)	338, 413
BaeGI	GKGCMC	1 cut(s)	610
BalI	TGGCCA	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	605
Bbv12I	GWGCWC	1 cut(s)	95
BbvI	GCAGC	3 cut(s)	40, 68, 262
BccI	CCATC	2 cut(s)	329, 614
BceAI	ACGGC	2 cut(s)	157, 543
BciT130I	CCWGG	1 cut(s)	155
BclI	TGATCA	1 cut(s)	226
BcnI	CCSGG	2 cut(s)	696, 697
BcoDI	GTCTC	2 cut(s)	296, 356
BfaI	CTAG	2 cut(s)	96, 715
BfmI	CTRYAG	2 cut(s)	54, 60
BisI	GCNGC	3 cut(s)	54, 57, 276
BlsI	GCNGC	3 cut(s)	55, 58, 277
Bme1390I	CCNGG	3 cut(s)	155, 696, 697
Bme18I	GGWCC	2 cut(s)	338, 413
BmeT110I	CYCGRG	3 cut(s)	88, 192, 695
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	3 cut(s)	338, 413, 446
BmiI	GGNNCC	3 cut(s)	247, 340, 607
BmrFI	CCNGG	3 cut(s)	155, 696, 697
BmsI	GCATC	1 cut(s)	151
BoxI	GACNNNNGTC	1 cut(s)	551
BpuEI	CTTGAG	2 cut(s)	200, 227
BpuMI	CCSGG	2 cut(s)	696, 697
BsaI	GGTCTC	1 cut(s)	356
BsaJI	CCNNGG	2 cut(s)	695, 696
BsaWI	WCCGGW	1 cut(s)	559
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
Bse118I	RCCGGY	2 cut(s)	173, 559
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	695, 696
BseGI	GGATG	1 cut(s)	549
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	3 cut(s)	40, 68, 262
BseYI	CCCAGC	3 cut(s)	20, 65, 448
Bsh1285I	CGRYCG	1 cut(s)	560
BshFI	GGCC	3 cut(s)	153, 158, 447
BshNI	GGYRCC	1 cut(s)	605
BshTI	ACCGGT	1 cut(s)	559
BsiEI	CGRYCG	1 cut(s)	560
BsiHKAI	GWGCWC	1 cut(s)	95
BsiHKCI	CYCGRG	3 cut(s)	88, 192, 695
BsiSI	CCGG	3 cut(s)	174, 560, 696
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	1 cut(s)	566
BsmAI	GTCTC	2 cut(s)	296, 356
BsmFI	GGGAC	1 cut(s)	713
BsnI	GGCC	3 cut(s)	153, 158, 447
Bso31I	GGTCTC	1 cut(s)	356
BsoBI	CYCGRG	3 cut(s)	88, 192, 695
Bsp1286I	GDGCHC	2 cut(s)	95, 610
Bsp143I	GATC	1 cut(s)	226
BspANI	GGCC	3 cut(s)	153, 158, 447
BspLI	GGNNCC	3 cut(s)	247, 340, 607
BspMAI	CTGCAG	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	605
BspTNI	GGTCTC	1 cut(s)	356
BsrFI	RCCGGY	2 cut(s)	173, 559
BssAI	RCCGGY	2 cut(s)	173, 559
BssECI	CCNNGG	2 cut(s)	695, 696
BssMI	GATC	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	4 cut(s)	16, 356, 496, 640
Bst6I	CTCTTC	1 cut(s)	321
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	166, 175
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	549
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	2 cut(s)	296, 356
BstMBI	GATC	1 cut(s)	226
BstMCI	CGRYCG	1 cut(s)	560
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 150, 170, 174, 284
BstNI	CCWGG	1 cut(s)	155
BstPAI	GACNNNNGTC	1 cut(s)	551
BstSCI	CCNGG	3 cut(s)	153, 694, 695
BstSFI	CTRYAG	2 cut(s)	54, 60
BstSLI	GKGCMC	1 cut(s)	610
BstV1I	GCAGC	3 cut(s)	40, 68, 262
BsuRI	GGCC	3 cut(s)	153, 158, 447
BtgZI	GCGATG	1 cut(s)	499
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	549
BtsIMutI	CAGTG	2 cut(s)	12, 663
Cac8I	GCNNGC	2 cut(s)	166, 175
Cfr10I	RCCGGY	2 cut(s)	173, 559
Cfr13I	GGNCC	3 cut(s)	338, 413, 446
Cfr9I	CCCGGG	1 cut(s)	695
Csp6I	GTAC	1 cut(s)	17
CspAI	ACCGGT	1 cut(s)	559
CviAII	CATG	5 cut(s)	290, 299, 381, 429, 551
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	356
Eco32I	GATATC	1 cut(s)	118
Eco47I	GGWCC	2 cut(s)	338, 413
Eco88I	CYCGRG	3 cut(s)	88, 192, 695
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	153
EcoRV	GATATC	1 cut(s)	118
FaeI	CATG	5 cut(s)	293, 302, 384, 432, 554
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	5 cut(s)	289, 298, 380, 428, 550
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	3 cut(s)	54, 57, 276
FokI	GGATG	1 cut(s)	556
Fsp4HI	GCNGC	3 cut(s)	54, 57, 276
FspBI	CTAG	2 cut(s)	96, 715
GluI	GCNGC	3 cut(s)	54, 57, 276
GsaI	CCCAGC	3 cut(s)	24, 69, 452
HaeIII	GGCC	3 cut(s)	153, 158, 447
HapII	CCGG	3 cut(s)	174, 560, 696
Hin1II	CATG	5 cut(s)	293, 302, 384, 432, 554
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	3 cut(s)	174, 560, 696
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188I	TCNGA	3 cut(s)	557, 569, 645
Hpy188III	TCNNGA	4 cut(s)	192, 206, 488, 523
Hpy8I	GTNNAC	1 cut(s)	413
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	3 cut(s)	289, 529, 566
HpyCH4III	ACNGT	4 cut(s)	16, 356, 496, 640
HpyCH4IV	ACGT	2 cut(s)	102, 649
HpyCH4V	TGCA	5 cut(s)	56, 164, 384, 584, 675
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 150, 170, 174, 284
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	2 cut(s)	102, 649
Hsp92II	CATG	5 cut(s)	293, 302, 384, 432, 554
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	697
Lsp1109I	GCAGC	3 cut(s)	40, 68, 262
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	2 cut(s)	96, 715
MaeII	ACGT	2 cut(s)	102, 649
MaeIII	GTNAC	2 cut(s)	121, 292
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	127, 338
MhlI	GDGCHC	2 cut(s)	95, 610
MlsI	TGGCCA	1 cut(s)	153
MluCI	AATT	2 cut(s)	131, 147
MluNI	TGGCCA	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	2 cut(s)	445, 580
MnlI	CCTC	3 cut(s)	70, 202, 352
Mox20I	TGGCCA	1 cut(s)	153
MroNI	GCCGGC	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	153
MseI	TTAA	2 cut(s)	479, 600
Msp20I	TGGCCA	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	3 cut(s)	174, 560, 696
MspR9I	CCNGG	3 cut(s)	155, 696, 697
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	5 cut(s)	62, 150, 170, 174, 284
NaeI	GCCGGC	1 cut(s)	175
NciI	CCSGG	2 cut(s)	696, 697
NdeII	GATC	1 cut(s)	226
NgoMIV	GCCGGC	1 cut(s)	173
NlaIII	CATG	5 cut(s)	293, 302, 384, 432, 554
NlaIV	GGNNCC	3 cut(s)	247, 340, 607
NmuCI	GTSAC	2 cut(s)	121, 292
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PdiI	GCCGGC	1 cut(s)	175
PinAI	ACCGGT	1 cut(s)	559
PkrI	GCNGC	3 cut(s)	55, 58, 277
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PshAI	GACNNNNGTC	1 cut(s)	551
PshBI	ATTAAT	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	153
PspFI	CCCAGC	3 cut(s)	20, 65, 448
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	3 cut(s)	247, 340, 607
PspPI	GGNCC	3 cut(s)	338, 413, 446
PsrI	GAACNNNNNNTAC	2 cut(s)	229, 261
PstI	CTGCAG	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	479, 600
SatI	GCNGC	3 cut(s)	54, 57, 276
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	3 cut(s)	338, 413, 446
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	3 cut(s)	155, 696, 697
SduI	GDGCHC	2 cut(s)	95, 610
SetI	ASST	9 cut(s)	55, 61, 67, 105, 170, 199, 203, 577, 652
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	2 cut(s)	54, 60
SinI	GGWCC	2 cut(s)	338, 413
SmaI	CCCGGG	1 cut(s)	697
SmlI	CTYRAG	2 cut(s)	206, 215
SmoI	CTYRAG	2 cut(s)	206, 215
Sse9I	AATT	2 cut(s)	131, 147
SspI	AATATT	1 cut(s)	671
SspMI	CTAG	2 cut(s)	96, 715
StyD4I	CCNGG	3 cut(s)	153, 694, 695
TaaI	ACNGT	4 cut(s)	16, 356, 496, 640
TaiI	ACGT	2 cut(s)	105, 652
TasI	AATT	2 cut(s)	131, 147
Tru1I	TTAA	2 cut(s)	479, 600
Tru9I	TTAA	2 cut(s)	479, 600
TscAI	CASTG	2 cut(s)	19, 670
TseFI	GTSAC	2 cut(s)	121, 292
TseI	GCWGC	3 cut(s)	53, 56, 275
Tsp45I	GTSAC	2 cut(s)	121, 292
TspDTI	ATGAA	1 cut(s)	299
TspGWI	ACGGA	1 cut(s)	489
TspMI	CCCGGG	1 cut(s)	695
TspRI	CASTG	2 cut(s)	19, 670
VpaK11BI	GGWCC	2 cut(s)	338, 413
VspI	ATTAAT	1 cut(s)	600
XapI	RAATTY	1 cut(s)	131
XmaI	CCCGGG	1 cut(s)	695
XspI	CTAG	2 cut(s)	96, 715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.