Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005235

Physical Location & Seq

Genomic Coordinates Reverse (-)

20347991 .. 20348416

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G204000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGATGTTTGATTGTGCAGATTTCTGCTACATAGAAGAGATAGATGGACCCTCAAAGGACTACTGTGATGAGAGCAACACACAATATCCATGCAAGCCAAACAAGGGCTACTACGGGCGTGGACCAATCCAACTATCATGGAACCCCAACTACGGGCGAGCTGGAGAAAGCATTGGCTTCGATGGATTAAACTCTCCTGAAACCGTTGCCAATGACCCCGTCATCTCCTTTAAGACGGCGTTGTGGTATTGGATGAACAGCGTCCGACCGGTCATCGGAGAAGGTTTCGGTGCAACAATACGAGCCATTAATGGTGCCCTTGAATGTGATGGTGGAAACCCTGCTACTGTTCAGAAACGTGTTGAGTATTTCACTGAATATTGTAACCAACTTGGTATTGCTCCCGGGGACAATCTCACTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0010262 GO:0016787 GO:0016798 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

142

Amino Acids

15.56

Weight (kDa)

4.37

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54420
fragaria_vesca	FvH4_4g10640
malus_domestica	MD04G1048000.v1.1
prunus_persica	Prupe.1G204000_v2.0.a1 Prupe.1G204700_v2.0.a1 Prupe.1G204800_v2.0.a1
pyrus_communis	pycom04g04190
rosa_chinensis	RchiOBHm_Chr4g0406271 RchiOBHm_Chr7g0219281
rosa_laevigata	RLG00000002299 RLG00000008782
rosa_multiflora	Rmu_sc0005137.1_g000013 Rmu_sc0009785.1_g000018 Rmu_ssc0000456.1_g000006
rosa_roxburghii	Rroxscaffold_3G00240100 Rroxscaffold_5G00351010
rosa_rugosa	Rorug04G0067400 Rorug07G0184100
rosa_samantha	Rh4AG136900 Rh4BG134500 Rh4CG145100 Rh4DG131600 Rh7AG327100 Rh7BG317000 Rh7CG344400 Rh7DG322500
rosa_wichuraiana	Rw4G011100 Rw4G011240 Rw7G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	314
AfiI	CCNNNNNNNGG	4 cut(s)	104, 152, 153, 275
AflIII	ACRYGT	1 cut(s)	358
AgeI	ACCGGT	1 cut(s)	268
AgsI	TTSAA	1 cut(s)	323
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
Ama87I	CYCGRG	1 cut(s)	404
AseI	ATTAAT	1 cut(s)	309
AsiGI	ACCGGT	1 cut(s)	268
AspS9I	GGNCC	2 cut(s)	47, 122
AsuC2I	CCSGG	2 cut(s)	405, 406
AvaI	CYCGRG	1 cut(s)	404
AvaII	GGWCC	2 cut(s)	47, 122
BaeGI	GKGCMC	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	314
BccI	CCATC	3 cut(s)	38, 176, 323
BceAI	ACGGC	1 cut(s)	252
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BcnI	CCSGG	2 cut(s)	405, 406
BfaI	CTAG	1 cut(s)	424
Bme1390I	CCNGG	2 cut(s)	405, 406
Bme18I	GGWCC	2 cut(s)	47, 122
BmeT110I	CYCGRG	1 cut(s)	404
BmgT120I	GGNCC	2 cut(s)	47, 122
BmiI	GGNNCC	3 cut(s)	49, 143, 316
BmrFI	CCNGG	2 cut(s)	405, 406
BpmI	CTGGAG	1 cut(s)	183
BpuMI	CCSGG	2 cut(s)	405, 406
BsaJI	CCNNGG	2 cut(s)	404, 405
BsaWI	WCCGGW	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 152, 153, 275
Bse118I	RCCGGY	1 cut(s)	268
BseDI	CCNNGG	2 cut(s)	404, 405
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	4 cut(s)	104, 152, 153, 275
BseSI	GKGCMC	1 cut(s)	319
BsgI	GTGCAG	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	269
BshNI	GGYRCC	1 cut(s)	314
BshTI	ACCGGT	1 cut(s)	268
BsiEI	CGRYCG	1 cut(s)	269
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	2 cut(s)	269, 405
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	4 cut(s)	104, 152, 153, 275
BsmFI	GGGAC	1 cut(s)	422
BsoBI	CYCGRG	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	319
BspLI	GGNNCC	3 cut(s)	49, 143, 316
BspT107I	GGYRCC	1 cut(s)	314
BsrFI	RCCGGY	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	404, 405
Bst4CI	ACNGT	3 cut(s)	65, 205, 349
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	95, 159
BstF5I	GGATG	1 cut(s)	258
BstMCI	CGRYCG	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	403, 404
BstSLI	GKGCMC	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	2 cut(s)	95, 159
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	47, 122
Cfr9I	CCCGGG	1 cut(s)	404
CseI	GACGC	1 cut(s)	250
CspAI	ACCGGT	1 cut(s)	268
CviAII	CATG	2 cut(s)	90, 138
CviJI	RGCY	5 cut(s)	97, 108, 161, 177, 305
CviKI_1	RGCY	5 cut(s)	97, 108, 161, 177, 305
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco47I	GGWCC	2 cut(s)	47, 122
Eco88I	CYCGRG	1 cut(s)	404
FaeI	CATG	2 cut(s)	93, 141
FaiI	YATR	3 cut(s)	32, 91, 139
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	2 cut(s)	89, 137
FokI	GGATG	1 cut(s)	265
FspBI	CTAG	1 cut(s)	424
GsuI	CTGGAG	1 cut(s)	183
HapII	CCGG	2 cut(s)	269, 405
HgaI	GACGC	1 cut(s)	250
Hin1II	CATG	2 cut(s)	93, 141
HpaII	CCGG	2 cut(s)	269, 405
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	3 cut(s)	266, 278, 354
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	3 cut(s)	65, 205, 349
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	3 cut(s)	17, 93, 293
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	2 cut(s)	93, 141
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	5 cut(s)	147, 210, 282, 354, 418
MaeI	CTAG	1 cut(s)	424
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	1 cut(s)	383
MboII	GAAGA	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	319
MmeI	TCCRAC	2 cut(s)	154, 289
MnlI	CCTC	1 cut(s)	61
MseI	TTAA	3 cut(s)	188, 231, 309
MspI	CCGG	2 cut(s)	269, 405
MspR9I	CCNGG	2 cut(s)	405, 406
NciI	CCSGG	2 cut(s)	405, 406
NlaIII	CATG	2 cut(s)	93, 141
NlaIV	GGNNCC	3 cut(s)	49, 143, 316
PflFI	GACNNNGTC	1 cut(s)	218
PinAI	ACCGGT	1 cut(s)	268
PshBI	ATTAAT	1 cut(s)	309
PspN4I	GGNNCC	3 cut(s)	49, 143, 316
PspPI	GGNCC	2 cut(s)	47, 122
PsrI	GAACNNNNNNTAC	2 cut(s)	134, 166
PsyI	GACNNNGTC	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	188, 231, 309
Sau96I	GGNCC	2 cut(s)	47, 122
ScrFI	CCNGG	2 cut(s)	405, 406
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	3 cut(s)	163, 286, 361
SinI	GGWCC	2 cut(s)	47, 122
SmaI	CCCGGG	1 cut(s)	406
SspI	AATATT	1 cut(s)	380
SspMI	CTAG	1 cut(s)	424
StyD4I	CCNGG	2 cut(s)	403, 404
TaaI	ACNGT	3 cut(s)	65, 205, 349
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	1 cut(s)	180
Tru1I	TTAA	3 cut(s)	188, 231, 309
Tru9I	TTAA	3 cut(s)	188, 231, 309
TscAI	CASTG	1 cut(s)	379
TspDTI	ATGAA	1 cut(s)	269
TspMI	CCCGGG	1 cut(s)	404
TspRI	CASTG	1 cut(s)	379
Tth111I	GACNNNGTC	1 cut(s)	218
VpaK11BI	GGWCC	2 cut(s)	47, 122
VspI	ATTAAT	1 cut(s)	309
XmaI	CCCGGG	1 cut(s)	404
XspI	CTAG	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.