Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005235

Physical Location & Seq

Genomic Coordinates Forward (+)

14360249 .. 14372992

Gene Structure 12744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGGTTCCCCTGCTTTCTCTTGTGCAAAAATACTGAAGCAGCAGCTTGTCATTGTGGCTGGAATAGCTCTAGTCCTTGTCCTAAGTTTGCATGTGGTAGAGGCTCAAAATTGTGGTTGTGCTGCGGACCTGTGCTGCAGCCGATACGGCTACTGCGGCACAGGCGACGACTACTGCGGCACGGGATGCCAAGCAGGGCCTTGCAACACGGCCCCCCTGACTCCCAGTACCAGTGATGTTCCGGTGGCGGACATCGTCACCCCGGAATTCTTCAACGGGATAATTGATCAAGCGGACGCTAGCTGCGCTGGAAAGGATTTCTATTCTCGGGCTGCTTTTCTGGATGCTCTTAACTCGTATGATCAGTTTGGTAAGATTGGTTCCCTTGATGATTCTAAACGGGAGATTGCTGCCTTCTTTGCCCACGTCACCCATGAGACCGGGCATTTTTGCTACATAGAAGAGATAGACGGGGCATCAAAAGACTACTGCGATGAGACTAACACGGAATATCCATGTAACCCGAACAAAGGTTATTACGGCAGGGGACCCATCCAACTATCGTGGAACTACAATTACGGTCCTGCCGGAAAGAGCATCGGGTTCGACGGAGTAAACTCCCCCGAAAGCGTAGCTAATGATGCACTCATTGCTTTTAAGACTGCACTATGGTACTGGATGAACAATGTTCGCCCGGTTATTGCAGAAGGCTTCGGGGAAACTATTCGAGCCATTAATGGTGCGCTTGAATGCGATGGTGGAAACCCTGCTACTGTACAGAAACGGGTCGACTATTACGTTGATTATTGTAACCAACTTGGTGTTGCCCCCGGTGACAACCTTACTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0010262 GO:0016787 GO:0016798 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

284

Amino Acids

30.32

Weight (kDa)

4.45

Isoelectric Point (pI)

29.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chitin_bind_1	PF00187	36 - 68	3.7e-08	Chitin recognition protein
Glyco_hydro_19	PF00182	85 - 230	5.8e-40	Chitinase class I
Glyco_hydro_19	PF00182	236 - 283	5e-09	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54420
fragaria_vesca	FvH4_4g10640
malus_domestica	MD04G1048000.v1.1
prunus_persica	Prupe.1G204000_v2.0.a1 Prupe.1G204700_v2.0.a1 Prupe.1G204800_v2.0.a1
pyrus_communis	pycom04g04190
rosa_chinensis	RchiOBHm_Chr4g0406271 RchiOBHm_Chr7g0219281
rosa_laevigata	RLG00000002299 RLG00000008782
rosa_multiflora	Rmu_sc0005137.1_g000013 Rmu_sc0009785.1_g000018 Rmu_ssc0000456.1_g000006
rosa_roxburghii	Rroxscaffold_3G00240100 Rroxscaffold_5G00351010
rosa_rugosa	Rorug04G0067400 Rorug07G0184100
rosa_samantha	Rh4AG136900 Rh4BG134500 Rh4CG145100 Rh4DG131600 Rh7AG327100 Rh7BG317000 Rh7CG344400 Rh7DG322500
rosa_wichuraiana	Rw4G011100 Rw4G011240 Rw7G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	789
AciI	CCGC	5 cut(s)	125, 156, 177, 248, 293
AcsI	RAATTY	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	56
AfaI	GTAC	3 cut(s)	229, 674, 777
AfiI	CCNNNNNNNGG	1 cut(s)	530
AgsI	TTSAA	2 cut(s)	274, 749
AjiI	CACGTC	1 cut(s)	427
AluBI	AGCT	4 cut(s)	46, 68, 303, 635
AluI	AGCT	4 cut(s)	46, 68, 303, 635
Alw26I	GTCTC	2 cut(s)	431, 491
Ama87I	CYCGRG	1 cut(s)	327
AoxI	GGCC	2 cut(s)	197, 210
ApeKI	GCWGC	8 cut(s)	40, 43, 122, 135, 138, 303, 332, 410
ApoI	RAATTY	1 cut(s)	266
AseI	ATTAAT	1 cut(s)	735
Asp700I	GAANNNNTTC	1 cut(s)	723
AspLEI	GCGC	2 cut(s)	308, 745
AspS9I	GGNCC	5 cut(s)	127, 197, 211, 548, 581
AsuC2I	CCSGG	4 cut(s)	263, 442, 695, 831
AsuHPI	GGTGA	3 cut(s)	250, 421, 845
AsuNHI	GCTAGC	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	327
AvaII	GGWCC	3 cut(s)	127, 548, 581
BbvI	GCAGC	8 cut(s)	52, 55, 109, 122, 150, 290, 319, 397
BccI	CCATC	2 cut(s)	560, 749
BceAI	ACGGC	3 cut(s)	163, 225, 556
BcgI	CGANNNNNNTGC	2 cut(s)	586, 620
BclI	TGATCA	2 cut(s)	286, 361
BcnI	CCSGG	4 cut(s)	263, 442, 695, 831
BcoDI	GTCTC	2 cut(s)	431, 491
BfaI	CTAG	3 cut(s)	71, 300, 850
BfmI	CTRYAG	1 cut(s)	136
BglI	GCCNNNNNGGC	1 cut(s)	147
Bme1390I	CCNGG	4 cut(s)	263, 442, 695, 831
Bme18I	GGWCC	3 cut(s)	127, 548, 581
BmeT110I	CYCGRG	1 cut(s)	327
BmgBI	CACGTC	1 cut(s)	427
BmgT120I	GGNCC	5 cut(s)	127, 197, 211, 548, 581
BmiI	GGNNCC	5 cut(s)	7, 213, 382, 549, 550
BmrFI	CCNGG	4 cut(s)	263, 442, 695, 831
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	5 cut(s)	176, 334, 485, 606, 631
BmtI	GCTAGC	1 cut(s)	303
BmuI	ACTGGG	1 cut(s)	219
BpuMI	CCSGG	4 cut(s)	263, 442, 695, 831
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	2 cut(s)	261, 829
BsaWI	WCCGGW	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	530
Bse1I	ACTGG	3 cut(s)	225, 231, 680
Bse3DI	GCAATG	1 cut(s)	648
BseDI	CCNNGG	2 cut(s)	261, 829
BseGI	GGATG	4 cut(s)	191, 349, 552, 684
BseLI	CCNNNNNNNGG	1 cut(s)	530
BseMI	GCAATG	1 cut(s)	648
BseNI	ACTGG	3 cut(s)	225, 231, 680
BseXI	GCAGC	8 cut(s)	52, 55, 109, 122, 150, 290, 319, 397
BsgI	GTGCAG	1 cut(s)	648
BshFI	GGCC	2 cut(s)	199, 212
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	6 cut(s)	242, 263, 441, 588, 695, 831
BslFI	GGGAC	1 cut(s)	561
BslI	CCNNNNNNNGG	1 cut(s)	530
BsmAI	GTCTC	2 cut(s)	431, 491
BsmFI	GGGAC	1 cut(s)	561
BsmI	GAATGC	1 cut(s)	755
BsnI	GGCC	2 cut(s)	199, 212
Bso31I	GGTCTC	1 cut(s)	431
BsoBI	CYCGRG	1 cut(s)	327
Bsp1407I	TGTACA	1 cut(s)	775
Bsp143I	GATC	2 cut(s)	286, 361
BspACI	CCGC	5 cut(s)	125, 156, 177, 248, 293
BspANI	GGCC	2 cut(s)	199, 212
BspLI	GGNNCC	5 cut(s)	7, 213, 382, 549, 550
BspMAI	CTGCAG	1 cut(s)	140
BspOI	GCTAGC	1 cut(s)	303
BspTNI	GGTCTC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	648
BsrGI	TGTACA	1 cut(s)	775
BsrI	ACTGG	3 cut(s)	225, 231, 680
BssECI	CCNNGG	2 cut(s)	261, 829
BssMI	GATC	2 cut(s)	286, 361
Bst4CI	ACNGT	2 cut(s)	581, 775
Bst6I	CTCTTC	1 cut(s)	456
BstAPI	GCANNNNNTGC	2 cut(s)	186, 650
BstAUI	TGTACA	1 cut(s)	775
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	1 cut(s)	83
BstF5I	GGATG	4 cut(s)	191, 349, 552, 684
BstHHI	GCGC	2 cut(s)	308, 745
BstKTI	GATC	2 cut(s)	289, 364
BstMAI	GTCTC	2 cut(s)	431, 491
BstMBI	GATC	2 cut(s)	286, 361
BstMWI	GCNNNNNNNGC	9 cut(s)	65, 147, 156, 162, 186, 305, 419, 641, 650
BstNSI	RCATGY	1 cut(s)	95
BstSCI	CCNGG	4 cut(s)	261, 440, 693, 829
BstSFI	CTRYAG	1 cut(s)	136
BstV1I	GCAGC	8 cut(s)	52, 55, 109, 122, 150, 290, 319, 397
BsuRI	GGCC	2 cut(s)	199, 212
BtgZI	GCGATG	2 cut(s)	507, 768
BtrI	CACGTC	1 cut(s)	427
BtsCI	GGATG	4 cut(s)	191, 349, 552, 684
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	301
CfoI	GCGC	2 cut(s)	308, 745
Cfr13I	GGNCC	5 cut(s)	127, 197, 211, 548, 581
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	3 cut(s)	228, 673, 776
CspCI	CAANNNNNGTGG	2 cut(s)	545, 580
CviAII	CATG	3 cut(s)	92, 434, 516
CviQI	GTAC	3 cut(s)	228, 673, 776
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	2 cut(s)	288, 363
DpnII	GATC	2 cut(s)	286, 361
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
EciI	GGCGGA	1 cut(s)	263
Eco31I	GGTCTC	1 cut(s)	431
Eco47I	GGWCC	3 cut(s)	127, 548, 581
Eco57I	CTGAAG	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	327
EcoO109I	RGGNCCY	2 cut(s)	197, 548
EcoRI	GAATTC	1 cut(s)	266
FaeI	CATG	3 cut(s)	95, 437, 519
FaiI	YATR	6 cut(s)	93, 360, 435, 458, 517, 670
FaqI	GGGAC	1 cut(s)	561
FatI	CATG	3 cut(s)	91, 433, 515
FbaI	TGATCA	2 cut(s)	286, 361
FblI	GTMKAC	1 cut(s)	789
FokI	GGATG	4 cut(s)	198, 356, 539, 691
FspBI	CTAG	3 cut(s)	71, 300, 850
GlaI	GCGC	2 cut(s)	307, 744
HaeIII	GGCC	2 cut(s)	199, 212
HapII	CCGG	6 cut(s)	242, 263, 441, 588, 695, 831
HgaI	GACGC	1 cut(s)	305
HhaI	GCGC	2 cut(s)	308, 745
Hin1II	CATG	3 cut(s)	95, 437, 519
Hin6I	GCGC	2 cut(s)	306, 743
HinP1I	GCGC	2 cut(s)	306, 743
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HinfI	GANTC	2 cut(s)	220, 392
HpaII	CCGG	6 cut(s)	242, 263, 441, 588, 695, 831
HphI	GGTGA	3 cut(s)	250, 421, 845
Hpy166II	GTNNAC	2 cut(s)	616, 790
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	2 cut(s)	616, 790
Hpy99I	CGWCG	2 cut(s)	170, 611
HpyAV	CCTTC	2 cut(s)	424, 701
HpyCH4III	ACNGT	2 cut(s)	581, 775
HpyCH4IV	ACGT	2 cut(s)	426, 798
HpyCH4V	TGCA	7 cut(s)	26, 91, 138, 204, 644, 665, 704
HpyF10VI	GCNNNNNNNGC	9 cut(s)	65, 147, 156, 162, 186, 305, 419, 641, 650
HpyF3I	CTNAG	1 cut(s)	83
HpySE526I	ACGT	2 cut(s)	426, 798
Hsp92II	CATG	3 cut(s)	95, 437, 519
HspAI	GCGC	2 cut(s)	306, 743
KflI	GGGWCCC	1 cut(s)	548
Ksp22I	TGATCA	2 cut(s)	286, 361
Kzo9I	GATC	2 cut(s)	286, 361
Lsp1109I	GCAGC	8 cut(s)	52, 55, 109, 122, 150, 290, 319, 397
LweI	GCATC	5 cut(s)	176, 334, 485, 606, 631
MaeI	CTAG	3 cut(s)	71, 300, 850
MaeII	ACGT	2 cut(s)	426, 798
MaeIII	GTNAC	5 cut(s)	256, 427, 518, 809, 833
MalI	GATC	2 cut(s)	288, 363
MboI	GATC	2 cut(s)	286, 361
MboII	GAAGA	2 cut(s)	262, 473
MluCI	AATT	4 cut(s)	109, 266, 282, 574
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	580
MnlI	CCTC	1 cut(s)	94
MroXI	GAANNNNTTC	1 cut(s)	723
MseI	TTAA	3 cut(s)	351, 657, 735
MspI	CCGG	6 cut(s)	242, 263, 441, 588, 695, 831
MspR9I	CCNGG	4 cut(s)	263, 442, 695, 831
Mva1269I	GAATGC	1 cut(s)	755
MwoI	GCNNNNNNNGC	9 cut(s)	65, 147, 156, 162, 186, 305, 419, 641, 650
NciI	CCSGG	4 cut(s)	263, 442, 695, 831
NdeII	GATC	2 cut(s)	286, 361
NheI	GCTAGC	1 cut(s)	299
NlaIII	CATG	3 cut(s)	95, 437, 519
NlaIV	GGNNCC	5 cut(s)	7, 213, 382, 549, 550
NmuCI	GTSAC	3 cut(s)	256, 427, 833
NspI	RCATGY	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	795
PctI	GAATGC	1 cut(s)	755
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	1 cut(s)	392
PflFI	GACNNNGTC	1 cut(s)	254
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PpuMI	RGGWCCY	1 cut(s)	548
PshBI	ATTAAT	1 cut(s)	735
Psp5II	RGGWCCY	1 cut(s)	548
PspN4I	GGNNCC	5 cut(s)	7, 213, 382, 549, 550
PspPI	GGNCC	5 cut(s)	127, 197, 211, 548, 581
PspPPI	RGGWCCY	1 cut(s)	548
PsrI	GAACNNNNNNTAC	4 cut(s)	364, 396, 560, 592
PstI	CTGCAG	1 cut(s)	140
PsyI	GACNNNGTC	1 cut(s)	254
RsaI	GTAC	3 cut(s)	229, 674, 777
RsaNI	GTAC	3 cut(s)	228, 673, 776
SalI	GTCGAC	1 cut(s)	788
SaqAI	TTAA	3 cut(s)	351, 657, 735
Sau3AI	GATC	2 cut(s)	286, 361
Sau96I	GGNCC	5 cut(s)	127, 197, 211, 548, 581
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	4 cut(s)	263, 442, 695, 831
SetI	ASST	9 cut(s)	48, 70, 132, 305, 429, 535, 637, 801, 843
SfaNI	GCATC	5 cut(s)	176, 334, 485, 606, 631
SfcI	CTRYAG	1 cut(s)	136
SinI	GGWCC	3 cut(s)	127, 548, 581
Sse9I	AATT	4 cut(s)	109, 266, 282, 574
SsiI	CCGC	5 cut(s)	125, 156, 177, 248, 293
SspMI	CTAG	3 cut(s)	71, 300, 850
StyD4I	CCNGG	4 cut(s)	261, 440, 693, 829
TaaI	ACNGT	2 cut(s)	581, 775
TaiI	ACGT	2 cut(s)	429, 801
TaqI	TCGA	3 cut(s)	606, 727, 789
TasI	AATT	4 cut(s)	109, 266, 282, 574
TatI	WGTACW	1 cut(s)	775
TauI	GCSGC	2 cut(s)	159, 180
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	3 cut(s)	351, 657, 735
Tru9I	TTAA	3 cut(s)	351, 657, 735
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	3 cut(s)	256, 427, 833
TseI	GCWGC	8 cut(s)	40, 43, 122, 135, 138, 303, 332, 410
Tsp45I	GTSAC	3 cut(s)	256, 427, 833
TspDTI	ATGAA	1 cut(s)	695
TspGWI	ACGGA	2 cut(s)	521, 624
TspRI	CASTG	1 cut(s)	238
Tth111I	GACNNNGTC	1 cut(s)	254
VpaK11BI	GGWCC	3 cut(s)	127, 548, 581
VspI	ATTAAT	1 cut(s)	735
XapI	RAATTY	1 cut(s)	266
XceI	RCATGY	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	789
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	3 cut(s)	71, 300, 850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.