Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005235

Physical Location & Seq

Genomic Coordinates Forward (+)

38569077 .. 38570035

Gene Structure 959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG322500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGTTCGCCTGCTTTCTCTTGTGCAATACCGAAAAACATACGGAAGAAGCAGCAGCTTGTCATTGTGGCAGGAATAGCTCTGGTGCTAGTCCTATGTGTAAGTGTAGTTGAGGGTCAAAATTGTGGTTGTGCTGCGGACCTGTGCTGCAGCCGATACGGCTACTGTGGCACCGGCGACGACTACTGCGGGACCGGATGCCAAGCGGGGCCTTGCCAAACGACGCCTCTACCTCCCAGTACCAGTGATGTTCCGGTGGCCGACATCGTGACCCCGACATTCTTCAACGGGATAATTGATCAATCGGAAGCAAGCTGTGCCGGGAGGGACTTCTATTCTCGGGCTACGTTCCTTGATGCTCTCCAGTTGTTTGATCAGTTTGGTAAGATTGGTTCCCTTAATGATTCTAAACGGGAGATCGCCGCCTTCTTTGCCCACGTCACCCATGAGACTGGACATTTTTGCTACATAGAAGAGATAGACGGAGCATCAAAAGACTACTGCGACGAGACTAACACGGAATATCCATGCAATCCGAACAAAGGTTATTACGGCCGGGGACCCATCCAACTATCGTGGAACTTCAATTACGGTCCGGCCGGAGAAAGTATTGGGTTCGACGGACTAAATTCCCCTGAAAGCGTGGCCAATGACCCACTCATTGCTTTTCAAACTGCATTGTGGTACTGGATGAAAAATGTTCGCCCGGTCATTGTTGAAGGGTTCGGGGAAACTATCCGAGCCATTAATGGTGCGCTTGAATGCGATGGTGGAAACCCTACTACTGTACAGAAACGCGTCGACTACTATATTGATTATTGTAACCAACTTGGTGTTGCCCCCGGTGACAACCTTACTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0010262 GO:0016787 GO:0016798 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

287

Amino Acids

30.99

Weight (kDa)

4.51

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chitin_bind_1	PF00187	41 - 72	3.1e-08	Chitin recognition protein
Glyco_hydro_19	PF00182	90 - 233	1e-37	Chitinase class I
Glyco_hydro_19	PF00182	239 - 287	2.6e-09	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54420
fragaria_vesca	FvH4_4g10640
malus_domestica	MD04G1048000.v1.1
prunus_persica	Prupe.1G204000_v2.0.a1 Prupe.1G204700_v2.0.a1 Prupe.1G204800_v2.0.a1
pyrus_communis	pycom04g04190
rosa_chinensis	RchiOBHm_Chr4g0406271 RchiOBHm_Chr7g0219281
rosa_laevigata	RLG00000002299 RLG00000008782
rosa_multiflora	Rmu_sc0005137.1_g000013 Rmu_sc0009785.1_g000018 Rmu_ssc0000456.1_g000006
rosa_roxburghii	Rroxscaffold_3G00240100 Rroxscaffold_5G00351010
rosa_rugosa	Rorug04G0067400 Rorug07G0184100
rosa_samantha	Rh4AG136900 Rh4BG134500 Rh4CG145100 Rh4DG131600 Rh7AG327100 Rh7BG317000 Rh7CG344400 Rh7DG322500
rosa_wichuraiana	Rw4G011100 Rw4G011240 Rw7G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	801
AccII	CGCG	1 cut(s)	798
AciI	CCGC	4 cut(s)	137, 189, 206, 423
AcoI	YGGCCR	4 cut(s)	258, 553, 597, 645
AcsI	RAATTY	1 cut(s)	628
AcyI	GRCGYC	1 cut(s)	224
AfaI	GTAC	3 cut(s)	241, 686, 789
AfiI	CCNNNNNNNGG	1 cut(s)	542
AflIII	ACRYGT	1 cut(s)	796
AgsI	TTSAA	5 cut(s)	286, 586, 671, 719, 761
AjiI	CACGTC	1 cut(s)	439
AluBI	AGCT	3 cut(s)	58, 80, 315
AluI	AGCT	3 cut(s)	58, 80, 315
Alw26I	GTCTC	2 cut(s)	443, 503
Ama87I	CYCGRG	1 cut(s)	339
AoxI	GGCC	5 cut(s)	209, 258, 553, 597, 645
ApeKI	GCWGC	5 cut(s)	52, 55, 134, 147, 150
ApoI	RAATTY	1 cut(s)	628
AseI	ATTAAT	1 cut(s)	747
AspLEI	GCGC	1 cut(s)	757
AspS9I	GGNCC	5 cut(s)	139, 192, 209, 560, 593
AsuC2I	CCSGG	4 cut(s)	322, 557, 707, 843
AsuHPI	GGTGA	2 cut(s)	433, 857
AvaI	CYCGRG	1 cut(s)	339
AvaII	GGWCC	4 cut(s)	139, 192, 560, 593
BalI	TGGCCA	1 cut(s)	647
BanI	GGYRCC	1 cut(s)	170
BbvI	GCAGC	5 cut(s)	64, 67, 121, 134, 162
BccI	CCATC	2 cut(s)	572, 761
BceAI	ACGGC	2 cut(s)	175, 568
BclI	TGATCA	2 cut(s)	298, 373
BcnI	CCSGG	4 cut(s)	322, 557, 707, 843
BcoDI	GTCTC	2 cut(s)	443, 503
BfaI	CTAG	2 cut(s)	89, 862
BfmI	CTRYAG	1 cut(s)	148
BglI	GCCNNNNNGGC	1 cut(s)	159
BisI	GCNGC	6 cut(s)	53, 56, 135, 148, 151, 423
BlsI	GCNGC	6 cut(s)	54, 57, 136, 149, 152, 424
Bme1390I	CCNGG	4 cut(s)	322, 557, 707, 843
Bme18I	GGWCC	4 cut(s)	139, 192, 560, 593
BmeT110I	CYCGRG	1 cut(s)	339
BmgBI	CACGTC	1 cut(s)	439
BmgT120I	GGNCC	5 cut(s)	139, 192, 209, 560, 593
BmiI	GGNNCC	6 cut(s)	172, 193, 210, 394, 561, 562
BmrFI	CCNGG	4 cut(s)	322, 557, 707, 843
BmrI	ACTGGG	1 cut(s)	231
BmsI	GCATC	3 cut(s)	188, 346, 497
BmuI	ACTGGG	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	347
BpuMI	CCSGG	4 cut(s)	322, 557, 707, 843
BsaHI	GRCGYC	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	556, 841
BsaWI	WCCGGW	2 cut(s)	194, 253
Bsc4I	CCNNNNNNNGG	1 cut(s)	542
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	5 cut(s)	237, 243, 364, 457, 692
Bse3DI	GCAATG	1 cut(s)	660
BseDI	CCNNGG	2 cut(s)	556, 841
BseGI	GGATG	3 cut(s)	203, 564, 696
BseLI	CCNNNNNNNGG	1 cut(s)	542
BseMI	GCAATG	1 cut(s)	660
BseNI	ACTGG	5 cut(s)	237, 243, 364, 457, 692
BseX3I	CGGCCG	2 cut(s)	553, 597
BseXI	GCAGC	5 cut(s)	64, 67, 121, 134, 162
Bsh1236I	CGCG	1 cut(s)	798
Bsh1285I	CGRYCG	2 cut(s)	556, 600
BshFI	GGCC	5 cut(s)	211, 260, 555, 599, 647
BshNI	GGYRCC	1 cut(s)	170
BsiEI	CGRYCG	2 cut(s)	556, 600
BsiHKCI	CYCGRG	1 cut(s)	339
BsiSI	CCGG	9 cut(s)	174, 195, 254, 321, 556, 596, 600, 707, 843
BslFI	GGGAC	3 cut(s)	205, 341, 573
BslI	CCNNNNNNNGG	1 cut(s)	542
BsmAI	GTCTC	2 cut(s)	443, 503
BsmFI	GGGAC	3 cut(s)	205, 341, 573
BsmI	GAATGC	1 cut(s)	767
BsnI	GGCC	5 cut(s)	211, 260, 555, 599, 647
BsoBI	CYCGRG	1 cut(s)	339
Bsp1407I	TGTACA	1 cut(s)	787
Bsp143I	GATC	3 cut(s)	298, 373, 417
BspACI	CCGC	4 cut(s)	137, 189, 206, 423
BspANI	GGCC	5 cut(s)	211, 260, 555, 599, 647
BspFNI	CGCG	1 cut(s)	798
BspLI	GGNNCC	6 cut(s)	172, 193, 210, 394, 561, 562
BspMAI	CTGCAG	1 cut(s)	152
BspT107I	GGYRCC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	660
BsrFI	RCCGGY	1 cut(s)	173
BsrGI	TGTACA	1 cut(s)	787
BsrI	ACTGG	5 cut(s)	237, 243, 364, 457, 692
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	556, 841
BssMI	GATC	3 cut(s)	298, 373, 417
BssNI	GRCGYC	1 cut(s)	224
Bst4CI	ACNGT	3 cut(s)	167, 593, 787
Bst6I	CTCTTC	1 cut(s)	468
BstACI	GRCGYC	1 cut(s)	224
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstAUI	TGTACA	1 cut(s)	787
BstC8I	GCNNGC	2 cut(s)	12, 313
BstF5I	GGATG	3 cut(s)	203, 564, 696
BstFNI	CGCG	1 cut(s)	798
BstHHI	GCGC	1 cut(s)	757
BstKTI	GATC	3 cut(s)	301, 376, 420
BstMAI	GTCTC	2 cut(s)	443, 503
BstMBI	GATC	3 cut(s)	298, 373, 417
BstMCI	CGRYCG	2 cut(s)	556, 600
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 159, 168, 317, 431
BstSCI	CCNGG	4 cut(s)	320, 555, 705, 841
BstSFI	CTRYAG	1 cut(s)	148
BstUI	CGCG	1 cut(s)	798
BstV1I	GCAGC	5 cut(s)	64, 67, 121, 134, 162
BstXI	CCANNNNNNTGG	1 cut(s)	452
BstZI	CGGCCG	2 cut(s)	553, 597
BsuRI	GGCC	5 cut(s)	211, 260, 555, 599, 647
BtgZI	GCGATG	1 cut(s)	780
BtrI	CACGTC	1 cut(s)	439
BtsCI	GGATG	3 cut(s)	203, 564, 696
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	2 cut(s)	12, 313
CfoI	GCGC	1 cut(s)	757
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	5 cut(s)	139, 192, 209, 560, 593
CpoI	CGGWCCG	1 cut(s)	593
CseI	GACGC	2 cut(s)	232, 787
Csp6I	GTAC	3 cut(s)	240, 685, 788
CspCI	CAANNNNNGTGG	2 cut(s)	557, 592
CspI	CGGWCCG	1 cut(s)	593
CviAII	CATG	2 cut(s)	446, 528
CviQI	GTAC	3 cut(s)	240, 685, 788
DpnI	GATC	3 cut(s)	300, 375, 419
DpnII	GATC	3 cut(s)	298, 373, 417
EaeI	YGGCCR	4 cut(s)	258, 553, 597, 645
EagI	CGGCCG	2 cut(s)	553, 597
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
EclXI	CGGCCG	2 cut(s)	553, 597
Eco47I	GGWCC	4 cut(s)	139, 192, 560, 593
Eco52I	CGGCCG	2 cut(s)	553, 597
Eco88I	CYCGRG	1 cut(s)	339
EcoO109I	RGGNCCY	2 cut(s)	209, 560
FaeI	CATG	2 cut(s)	449, 531
FaiI	YATR	6 cut(s)	41, 97, 447, 470, 529, 810
FaqI	GGGAC	3 cut(s)	205, 341, 573
FatI	CATG	2 cut(s)	445, 527
FauI	CCCGC	2 cut(s)	182, 199
FbaI	TGATCA	2 cut(s)	298, 373
FblI	GTMKAC	1 cut(s)	801
Fnu4HI	GCNGC	6 cut(s)	53, 56, 135, 148, 151, 423
FokI	GGATG	3 cut(s)	210, 551, 703
Fsp4HI	GCNGC	6 cut(s)	53, 56, 135, 148, 151, 423
FspBI	CTAG	2 cut(s)	89, 862
GlaI	GCGC	1 cut(s)	756
GluI	GCNGC	6 cut(s)	53, 56, 135, 148, 151, 423
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	5 cut(s)	211, 260, 555, 599, 647
HapII	CCGG	9 cut(s)	174, 195, 254, 321, 556, 596, 600, 707, 843
HgaI	GACGC	2 cut(s)	232, 787
HhaI	GCGC	1 cut(s)	757
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	2 cut(s)	449, 531
Hin6I	GCGC	1 cut(s)	755
HinP1I	GCGC	1 cut(s)	755
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HinfI	GANTC	1 cut(s)	404
HpaII	CCGG	9 cut(s)	174, 195, 254, 321, 556, 596, 600, 707, 843
HphI	GGTGA	2 cut(s)	433, 857
Hpy166II	GTNNAC	1 cut(s)	802
Hpy188I	TCNGA	3 cut(s)	307, 537, 740
Hpy188III	TCNNGA	1 cut(s)	268
Hpy8I	GTNNAC	1 cut(s)	802
Hpy99I	CGWCG	5 cut(s)	182, 226, 509, 623, 803
HpyAV	CCTTC	2 cut(s)	436, 713
HpyCH4III	ACNGT	3 cut(s)	167, 593, 787
HpyCH4IV	ACGT	2 cut(s)	347, 438
HpyCH4V	TGCA	4 cut(s)	26, 150, 531, 677
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 159, 168, 317, 431
HpySE526I	ACGT	2 cut(s)	347, 438
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	449, 531
HspAI	GCGC	1 cut(s)	755
KflI	GGGWCCC	1 cut(s)	560
Ksp22I	TGATCA	2 cut(s)	298, 373
Kzo9I	GATC	3 cut(s)	298, 373, 417
LmnI	GCTCC	1 cut(s)	485
Lsp1109I	GCAGC	5 cut(s)	64, 67, 121, 134, 162
LweI	GCATC	3 cut(s)	188, 346, 497
MaeI	CTAG	2 cut(s)	89, 862
MaeII	ACGT	2 cut(s)	347, 438
MaeIII	GTNAC	4 cut(s)	268, 439, 821, 845
MalI	GATC	3 cut(s)	300, 375, 419
MboI	GATC	3 cut(s)	298, 373, 417
MboII	GAAGA	3 cut(s)	58, 274, 485
MlsI	TGGCCA	1 cut(s)	647
MluCI	AATT	4 cut(s)	121, 294, 586, 628
MluI	ACGCGT	1 cut(s)	796
MluNI	TGGCCA	1 cut(s)	647
MmeI	TCCRAC	1 cut(s)	592
MnlI	CCTC	4 cut(s)	106, 237, 243, 318
Mox20I	TGGCCA	1 cut(s)	647
MscI	TGGCCA	1 cut(s)	647
MseI	TTAA	2 cut(s)	399, 747
Msp20I	TGGCCA	1 cut(s)	647
MspI	CCGG	9 cut(s)	174, 195, 254, 321, 556, 596, 600, 707, 843
MspR9I	CCNGG	4 cut(s)	322, 557, 707, 843
Mva1269I	GAATGC	1 cut(s)	767
MvnI	CGCG	1 cut(s)	798
MwoI	GCNNNNNNNGC	5 cut(s)	77, 159, 168, 317, 431
NciI	CCSGG	4 cut(s)	322, 557, 707, 843
NdeII	GATC	3 cut(s)	298, 373, 417
NlaIII	CATG	2 cut(s)	449, 531
NlaIV	GGNNCC	6 cut(s)	172, 193, 210, 394, 561, 562
NmuCI	GTSAC	3 cut(s)	268, 439, 845
PctI	GAATGC	1 cut(s)	767
PfeI	GAWTC	1 cut(s)	404
PkrI	GCNGC	6 cut(s)	54, 57, 136, 149, 152, 424
PpuMI	RGGWCCY	1 cut(s)	560
PshBI	ATTAAT	1 cut(s)	747
Psp5II	RGGWCCY	1 cut(s)	560
PspN4I	GGNNCC	6 cut(s)	172, 193, 210, 394, 561, 562
PspPI	GGNCC	5 cut(s)	139, 192, 209, 560, 593
PspPPI	RGGWCCY	1 cut(s)	560
PsrI	GAACNNNNNNTAC	4 cut(s)	376, 408, 572, 604
PstI	CTGCAG	1 cut(s)	152
RsaI	GTAC	3 cut(s)	241, 686, 789
RsaNI	GTAC	3 cut(s)	240, 685, 788
Rsr2I	CGGWCCG	1 cut(s)	593
RsrII	CGGWCCG	1 cut(s)	593
SalI	GTCGAC	1 cut(s)	800
SaqAI	TTAA	2 cut(s)	399, 747
SatI	GCNGC	6 cut(s)	53, 56, 135, 148, 151, 423
Sau3AI	GATC	3 cut(s)	298, 373, 417
Sau96I	GGNCC	5 cut(s)	139, 192, 209, 560, 593
ScrFI	CCNGG	4 cut(s)	322, 557, 707, 843
SetI	ASST	9 cut(s)	60, 82, 144, 235, 317, 350, 441, 547, 855
SfaNI	GCATC	3 cut(s)	188, 346, 497
SfcI	CTRYAG	1 cut(s)	148
SgrAI	CRCCGGYG	1 cut(s)	173
SinI	GGWCC	4 cut(s)	139, 192, 560, 593
Sse9I	AATT	4 cut(s)	121, 294, 586, 628
SsiI	CCGC	4 cut(s)	137, 189, 206, 423
SspMI	CTAG	2 cut(s)	89, 862
StyD4I	CCNGG	4 cut(s)	320, 555, 705, 841
TaaI	ACNGT	3 cut(s)	167, 593, 787
TaiI	ACGT	2 cut(s)	350, 441
TaqI	TCGA	2 cut(s)	618, 801
TasI	AATT	4 cut(s)	121, 294, 586, 628
TatI	WGTACW	1 cut(s)	787
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	2 cut(s)	399, 747
Tru9I	TTAA	2 cut(s)	399, 747
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	3 cut(s)	268, 439, 845
TseI	GCWGC	5 cut(s)	52, 55, 134, 147, 150
Tsp45I	GTSAC	3 cut(s)	268, 439, 845
TspDTI	ATGAA	1 cut(s)	707
TspGWI	ACGGA	4 cut(s)	58, 498, 533, 636
TspRI	CASTG	1 cut(s)	250
VpaK11BI	GGWCC	4 cut(s)	139, 192, 560, 593
VspI	ATTAAT	1 cut(s)	747
XapI	RAATTY	1 cut(s)	628
XmiI	GTMKAC	1 cut(s)	801
XspI	CTAG	2 cut(s)	89, 862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.