Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005235

Physical Location & Seq

Genomic Coordinates Forward (+)

5630350 .. 5631818

Gene Structure 1469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1048000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCTAGTTGCTTGCTCCATTCCCACTATAAATATCCAACTCCACCTTCTTCTTCATCACTCAATCACAGCTTCAGAAATCAATCAAATGGCGGCCAGAAGCATAATATTAACCCTTTTTATTGTAGCCACGGGAGTCCTGTCCGGCTATGCAGACGCTCAGAACTGTGGCTGTGCCGCAGACCAGTGCTGTAGCCAATACGGCTACTGTGGCACAGACGATGCCTACTGCGGCACAGGCTGCAAGTCAGGGCCTTGCAAGACGCCGGCTCAAACACCGAGTACCAGCGATGTGGTGGTGGCGGATATTGTAACGCCCGAATTCTTCAACGGGATAATTGATCAGGCGGACGCAAGTTGTGCCGGCAAGAACTTTTACTCCCGAGCTACCTTCCTTGAAGCTCTCAATTCCTATACTCAGTTCGGTAGGATTGGTTCCATTGACGACTCTAAGCGCGAGATTGCTGCTTTCTTTGCCCATGTCACCCACGAGACTGGACATTTTTGCTACATAGAAGAGATAGATGGAGCCTCAAAAGACTACTGTGATGAGACCAACACACAATATCCATGCAACCCAAACAAAGGGTACTATGGGCGTGGACCTATCCAACTATCATGGAACTTCAACTACGGTCCGGCCGGAGAGAGCATTGGGTTTGATGGACTAAACTCTCCTGAAACCGTGGCCAACGACCCTGTCATTGCTTTCAAAACGGCGCTGTGGTACTGGATGAACAACGTTAGGCCGGTCATCGGTGAAGGTTTCGGTGCAACCATTCGAGCCATCAATGGTGCGCTTGAATGCGATGGTGGAAATCCTGCTACAGTTCAGAGACGTGTTGAGTATTACACAGAATATTGTAACCAACTTGGTGTTGCTCCTGGTGACAATCTCACCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0010262 GO:0016787 GO:0016798 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

302

Amino Acids

32.46

Weight (kDa)

4.63

Isoelectric Point (pI)

29.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chitin_bind_1	PF00187	53 - 86	2.9e-07	Chitin recognition protein
Glyco_hydro_19	PF00182	103 - 248	1.9e-40	Chitinase class I
Glyco_hydro_19	PF00182	255 - 301	2.4e-09	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54420
fragaria_vesca	FvH4_4g10640
malus_domestica	MD04G1048000.v1.1
prunus_persica	Prupe.1G204000_v2.0.a1 Prupe.1G204700_v2.0.a1 Prupe.1G204800_v2.0.a1
pyrus_communis	pycom04g04190
rosa_chinensis	RchiOBHm_Chr4g0406271 RchiOBHm_Chr7g0219281
rosa_laevigata	RLG00000002299 RLG00000008782
rosa_multiflora	Rmu_sc0005137.1_g000013 Rmu_sc0009785.1_g000018 Rmu_ssc0000456.1_g000006
rosa_roxburghii	Rroxscaffold_3G00240100 Rroxscaffold_5G00351010
rosa_rugosa	Rorug04G0067400 Rorug07G0184100
rosa_samantha	Rh4AG136900 Rh4BG134500 Rh4CG145100 Rh4DG131600 Rh7AG327100 Rh7BG317000 Rh7CG344400 Rh7DG322500
rosa_wichuraiana	Rw4G011100 Rw4G011240 Rw7G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	456
AciI	CCGC	5 cut(s)	92, 177, 231, 302, 347
AclI	AACGTT	1 cut(s)	741
AcoI	YGGCCR	3 cut(s)	93, 639, 687
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	1 cut(s)	57
AcyI	GRCGYC	1 cut(s)	263
AfaI	GTAC	3 cut(s)	283, 590, 728
AfiI	CCNNNNNNNGG	2 cut(s)	584, 755
AflIII	ACRYGT	1 cut(s)	838
AgsI	TTSAA	5 cut(s)	328, 398, 628, 712, 803
AjiI	CACGTC	1 cut(s)	839
AjnI	CCWGG	1 cut(s)	883
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AloI	GAACNNNNNNTCC	2 cut(s)	362, 394
AluBI	AGCT	3 cut(s)	71, 386, 401
AluI	AGCT	3 cut(s)	71, 386, 401
Alw26I	GTCTC	3 cut(s)	485, 545, 829
Ama87I	CYCGRG	1 cut(s)	381
AoxI	GGCC	5 cut(s)	93, 251, 639, 687, 746
ApeKI	GCWGC	2 cut(s)	240, 464
ApoI	RAATTY	1 cut(s)	320
AspLEI	GCGC	3 cut(s)	456, 721, 799
AspS9I	GGNCC	3 cut(s)	251, 602, 635
AsuHPI	GGTGA	4 cut(s)	475, 770, 889, 899
AvaI	CYCGRG	1 cut(s)	381
AvaII	GGWCC	2 cut(s)	602, 635
BalI	TGGCCA	1 cut(s)	689
BauI	CACGAG	1 cut(s)	488
BbvI	GCAGC	2 cut(s)	227, 451
BccI	CCATC	4 cut(s)	518, 656, 794, 803
BceAI	ACGGC	2 cut(s)	217, 732
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BciT130I	CCWGG	1 cut(s)	885
BclI	TGATCA	1 cut(s)	340
BcoDI	GTCTC	3 cut(s)	485, 545, 829
BfaI	CTAG	2 cut(s)	5, 904
BfmI	CTRYAG	2 cut(s)	190, 825
BfoI	RGCGCY	1 cut(s)	722
BglI	GCCNNNNNGGC	1 cut(s)	201
BisI	GCNGC	5 cut(s)	93, 177, 232, 241, 465
BlsI	GCNGC	5 cut(s)	94, 178, 233, 242, 466
Bme1390I	CCNGG	1 cut(s)	885
Bme18I	GGWCC	2 cut(s)	602, 635
BmeT110I	CYCGRG	1 cut(s)	381
BmgBI	CACGTC	1 cut(s)	839
BmgT120I	GGNCC	3 cut(s)	251, 602, 635
BmiI	GGNNCC	2 cut(s)	436, 529
BmrFI	CCNGG	1 cut(s)	885
BmsI	GCATC	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	545
BsaJI	CCNNGG	2 cut(s)	129, 684
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bsc4I	CCNNNNNNNGG	2 cut(s)	584, 755
Bse118I	RCCGGY	3 cut(s)	265, 362, 748
Bse1I	ACTGG	3 cut(s)	184, 499, 734
Bse3DI	GCAATG	1 cut(s)	702
BseBI	CCWGG	1 cut(s)	885
BseDI	CCNNGG	2 cut(s)	129, 684
BseGI	GGATG	1 cut(s)	738
BseLI	CCNNNNNNNGG	2 cut(s)	584, 755
BseMI	GCAATG	1 cut(s)	702
BseMII	CTCAG	2 cut(s)	173, 431
BseNI	ACTGG	3 cut(s)	184, 499, 734
BseX3I	CGGCCG	1 cut(s)	639
BseXI	GCAGC	2 cut(s)	227, 451
Bsh1236I	CGCG	1 cut(s)	456
Bsh1285I	CGRYCG	1 cut(s)	642
BshFI	GGCC	5 cut(s)	95, 253, 641, 689, 748
BsiEI	CGRYCG	1 cut(s)	642
BsiHKCI	CYCGRG	1 cut(s)	381
BsiSI	CCGG	6 cut(s)	144, 266, 363, 638, 642, 749
BslI	CCNNNNNNNGG	2 cut(s)	584, 755
BsmAI	GTCTC	3 cut(s)	485, 545, 829
BsmBI	CGTCTC	1 cut(s)	829
BsmI	GAATGC	1 cut(s)	809
BsnI	GGCC	5 cut(s)	95, 253, 641, 689, 748
Bso31I	GGTCTC	1 cut(s)	545
BsoBI	CYCGRG	1 cut(s)	381
Bsp143I	GATC	1 cut(s)	340
BspACI	CCGC	5 cut(s)	92, 177, 231, 302, 347
BspANI	GGCC	5 cut(s)	95, 253, 641, 689, 748
BspCNI	CTCAG	2 cut(s)	172, 430
BspFNI	CGCG	1 cut(s)	456
BspLI	GGNNCC	2 cut(s)	436, 529
BspTNI	GGTCTC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	702
BsrFI	RCCGGY	3 cut(s)	265, 362, 748
BsrI	ACTGG	3 cut(s)	184, 499, 734
BssAI	RCCGGY	3 cut(s)	265, 362, 748
BssECI	CCNNGG	2 cut(s)	129, 684
BssMI	GATC	1 cut(s)	340
BssNI	GRCGYC	1 cut(s)	263
BssSI	CACGAG	1 cut(s)	488
Bst2BI	CACGAG	1 cut(s)	488
Bst2UI	CCWGG	1 cut(s)	885
Bst4CI	ACNGT	6 cut(s)	167, 209, 545, 635, 685, 829
Bst6I	CTCTTC	1 cut(s)	510
BstACI	GRCGYC	1 cut(s)	263
BstAPI	GCANNNNNTGC	2 cut(s)	240, 359
BstC8I	GCNNGC	3 cut(s)	13, 267, 364
BstDEI	CTNAG	3 cut(s)	159, 417, 450
BstDSI	CCRYGG	2 cut(s)	129, 684
BstF5I	GGATG	1 cut(s)	738
BstFNI	CGCG	1 cut(s)	456
BstH2I	RGCGCY	1 cut(s)	722
BstHHI	GCGC	3 cut(s)	456, 721, 799
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	3 cut(s)	485, 545, 829
BstMBI	GATC	1 cut(s)	340
BstMCI	CGRYCG	1 cut(s)	642
BstMWI	GCNNNNNNNGC	6 cut(s)	201, 210, 237, 240, 359, 473
BstNI	CCWGG	1 cut(s)	885
BstSCI	CCNGG	1 cut(s)	883
BstSFI	CTRYAG	2 cut(s)	190, 825
BstUI	CGCG	1 cut(s)	456
BstV1I	GCAGC	2 cut(s)	227, 451
BstXI	CCANNNNNNTGG	2 cut(s)	292, 494
BstZI	CGGCCG	1 cut(s)	639
BsuRI	GGCC	5 cut(s)	95, 253, 641, 689, 748
BtgI	CCRYGG	2 cut(s)	129, 684
BtgZI	GCGATG	2 cut(s)	303, 822
BtrI	CACGTC	1 cut(s)	839
BtsCI	GGATG	1 cut(s)	738
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	3 cut(s)	13, 267, 364
CfoI	GCGC	3 cut(s)	456, 721, 799
Cfr10I	RCCGGY	3 cut(s)	265, 362, 748
Cfr13I	GGNCC	3 cut(s)	251, 602, 635
CpoI	CGGWCCG	1 cut(s)	635
CseI	GACGC	3 cut(s)	164, 271, 359
Csp6I	GTAC	3 cut(s)	282, 589, 727
CspI	CGGWCCG	1 cut(s)	635
CviAII	CATG	3 cut(s)	479, 570, 618
CviQI	GTAC	3 cut(s)	282, 589, 727
DdeI	CTNAG	3 cut(s)	159, 417, 450
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
EaeI	YGGCCR	3 cut(s)	93, 639, 687
EagI	CGGCCG	1 cut(s)	639
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
EciI	GGCGGA	2 cut(s)	317, 362
EclXI	CGGCCG	1 cut(s)	639
Eco31I	GGTCTC	1 cut(s)	545
Eco47I	GGWCC	2 cut(s)	602, 635
Eco52I	CGGCCG	1 cut(s)	639
Eco57I	CTGAAG	1 cut(s)	57
Eco88I	CYCGRG	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	883
Esp3I	CGTCTC	1 cut(s)	829
FaeI	CATG	3 cut(s)	482, 573, 621
FaiI	YATR	9 cut(s)	29, 104, 150, 414, 480, 512, 571, 594, 619
FatI	CATG	3 cut(s)	478, 569, 617
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	5 cut(s)	93, 177, 232, 241, 465
FokI	GGATG	1 cut(s)	745
Fsp4HI	GCNGC	5 cut(s)	93, 177, 232, 241, 465
FspBI	CTAG	2 cut(s)	5, 904
GlaI	GCGC	3 cut(s)	455, 720, 798
GluI	GCNGC	5 cut(s)	93, 177, 232, 241, 465
HaeII	RGCGCY	1 cut(s)	722
HaeIII	GGCC	5 cut(s)	95, 253, 641, 689, 748
HapII	CCGG	6 cut(s)	144, 266, 363, 638, 642, 749
HgaI	GACGC	3 cut(s)	164, 271, 359
HhaI	GCGC	3 cut(s)	456, 721, 799
Hin1I	GRCGYC	1 cut(s)	263
Hin1II	CATG	3 cut(s)	482, 573, 621
Hin6I	GCGC	3 cut(s)	454, 719, 797
HinP1I	GCGC	3 cut(s)	454, 719, 797
HinfI	GANTC	2 cut(s)	135, 446
HpaII	CCGG	6 cut(s)	144, 266, 363, 638, 642, 749
HphI	GGTGA	4 cut(s)	475, 770, 889, 899
Hpy166II	GTNNAC	1 cut(s)	602
Hpy188I	TCNGA	3 cut(s)	76, 162, 834
Hpy188III	TCNNGA	2 cut(s)	381, 677
Hpy8I	GTNNAC	1 cut(s)	602
HpyAV	CCTTC	3 cut(s)	56, 400, 755
HpyCH4III	ACNGT	6 cut(s)	167, 209, 545, 635, 685, 829
HpyCH4IV	ACGT	2 cut(s)	741, 838
HpyCH4V	TGCA	5 cut(s)	152, 243, 258, 573, 773
HpyF10VI	GCNNNNNNNGC	6 cut(s)	201, 210, 237, 240, 359, 473
HpyF3I	CTNAG	3 cut(s)	159, 417, 450
HpySE526I	ACGT	2 cut(s)	741, 838
Hsp92I	GRCGYC	1 cut(s)	263
Hsp92II	CATG	3 cut(s)	482, 573, 621
HspAI	GCGC	3 cut(s)	454, 719, 797
KroI	GCCGGC	2 cut(s)	265, 362
KroNI	GCCGGC	2 cut(s)	267, 364
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	3 cut(s)	20, 527, 886
Lsp1109I	GCAGC	2 cut(s)	227, 451
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	2 cut(s)	5, 904
MaeII	ACGT	2 cut(s)	741, 838
MaeIII	GTNAC	4 cut(s)	310, 481, 863, 887
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	4 cut(s)	41, 44, 316, 527
MlsI	TGGCCA	1 cut(s)	689
MluCI	AATT	3 cut(s)	320, 336, 406
MluNI	TGGCCA	1 cut(s)	689
MlyI	GAGTC	2 cut(s)	144, 440
MmeI	TCCRAC	2 cut(s)	61, 634
MnlI	CCTC	1 cut(s)	541
Mox20I	TGGCCA	1 cut(s)	689
MroNI	GCCGGC	2 cut(s)	265, 362
MscI	TGGCCA	1 cut(s)	689
MseI	TTAA	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	689
MspI	CCGG	6 cut(s)	144, 266, 363, 638, 642, 749
MspR9I	CCNGG	1 cut(s)	885
Mva1269I	GAATGC	1 cut(s)	809
MvaI	CCWGG	1 cut(s)	885
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	6 cut(s)	201, 210, 237, 240, 359, 473
NaeI	GCCGGC	2 cut(s)	267, 364
NdeII	GATC	1 cut(s)	340
NgoMIV	GCCGGC	2 cut(s)	265, 362
NlaIII	CATG	3 cut(s)	482, 573, 621
NlaIV	GGNNCC	2 cut(s)	436, 529
NmuCI	GTSAC	2 cut(s)	481, 887
PctI	GAATGC	1 cut(s)	809
PdiI	GCCGGC	2 cut(s)	267, 364
PflFI	GACNNNGTC	1 cut(s)	698
PkrI	GCNGC	5 cut(s)	94, 178, 233, 242, 466
PleI	GAGTC	2 cut(s)	143, 440
PpsI	GAGTC	2 cut(s)	143, 440
Psp1406I	AACGTT	1 cut(s)	741
Psp6I	CCWGG	1 cut(s)	883
PspGI	CCWGG	1 cut(s)	883
PspN4I	GGNNCC	2 cut(s)	436, 529
PspPI	GGNCC	3 cut(s)	251, 602, 635
PsrI	GAACNNNNNNTAC	4 cut(s)	418, 450, 614, 646
PsyI	GACNNNGTC	1 cut(s)	698
RsaI	GTAC	3 cut(s)	283, 590, 728
RsaNI	GTAC	3 cut(s)	282, 589, 727
Rsr2I	CGGWCCG	1 cut(s)	635
RsrII	CGGWCCG	1 cut(s)	635
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	5 cut(s)	93, 177, 232, 241, 465
Sau3AI	GATC	1 cut(s)	340
Sau96I	GGNCC	3 cut(s)	251, 602, 635
SchI	GAGTC	2 cut(s)	144, 440
ScrFI	CCNGG	1 cut(s)	885
SfaNI	GCATC	1 cut(s)	211
SfcI	CTRYAG	2 cut(s)	190, 825
SinI	GGWCC	2 cut(s)	602, 635
Sse9I	AATT	3 cut(s)	320, 336, 406
SsiI	CCGC	5 cut(s)	92, 177, 231, 302, 347
SspI	AATATT	2 cut(s)	108, 860
SspMI	CTAG	2 cut(s)	5, 904
StyD4I	CCNGG	1 cut(s)	883
TaaI	ACNGT	6 cut(s)	167, 209, 545, 635, 685, 829
TaiI	ACGT	2 cut(s)	744, 841
TaqI	TCGA	1 cut(s)	781
TasI	AATT	3 cut(s)	320, 336, 406
TauI	GCSGC	3 cut(s)	95, 179, 234
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	1 cut(s)	191
TseFI	GTSAC	2 cut(s)	481, 887
TseI	GCWGC	2 cut(s)	240, 464
Tsp45I	GTSAC	2 cut(s)	481, 887
TspDTI	ATGAA	2 cut(s)	44, 749
TspRI	CASTG	1 cut(s)	191
Tth111I	GACNNNGTC	1 cut(s)	698
VpaK11BI	GGWCC	2 cut(s)	602, 635
XapI	RAATTY	1 cut(s)	320
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XspI	CTAG	2 cut(s)	5, 904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.