Rorug07G0184100

Endochitinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
15400338 .. 15401756
1419 bp
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UTR
Exon/CDS
Intron
Rorug07G0184100.1

Sequence Viewer

Length: 1419 bp
ATGCTTTCAGAGCTCAAAATACAAAGAGGAATAGCTCTGCCTCTGGTGGTTATGAACTTGACATGGTTTGCCAAAATAGCCATCACAACAGCTTTTCTAGGAAGACTCGGAGAGCTTCAACTGGCTGGTGGCACACTTGGTTTCACTTTCGCTAATGTCACCGGCTTCTCTGTCTTGAGTGGTCTCTGTGGTGCCATGGAGCCCGTATGTGGTCAAGCATATGGAGCCAAAAACATTAGGCTTCTCCACAAGACCCTTCTTATGACAACTTTCTTGTTACTTCTTGCAACTCTTCCTATTTCATTTTTGTGGCTCAGTGTTGACAAAATCCTCATCCATTTTGGCCAACAAGAAGATATTTCAACAGTTGCAAAGACCTACCTTTTCTATCTCCTACCAGACTTGGTTATTACCGCATTGCTTTGTCCCCTCAAAGCCTACTTGAACTCGCAAAGCATCACGGTTCCTTCCATGTTCTGCTCAGGTCTTGCTCTTGCCTTTCACATACCAATCAACATAGTGCTTGCAAACGCTAAAGGTATTGAGGGAGTTGCAATGTCTGTCTGGATCACTGACCTTATGGTTGTGATTCTACTTGCAATTTATGTGTGTGTGATTGAAGTTAAGGCAAAAGAAGGAAGGTGGAAAGAAGGCGGGTGGCTGGACCAAGGTGTTCAGGATTGGATTAGACTGCTCAAGCTTTGTGGACCTTGCTGCCTCACTACCTGCCTAGAATGGTGGTGTTATGAGATTCTGGTCCTGTTAACTGGCCGGCTTGCCAATGCCAAGCAGGCAGTCGGAGTTTTAGCCATCGTACTAAACTTCGACTACTTGCTATACTCGGTGATGCTGTCTCTGGCAACATGTGCGTCGACTCGAGTCTCAAATGAGCTCGGAGCAAACAGGGCAGGACCTGCGTACCAATCTGCATTTGTGTCTCTGGCAGTGAGTTTGGTCTCTGGTTGTTTAGGTGGATTGGTGATGGTAGCAGCCAGGGGAAGTTGGGGGTCATTGTTTAGCCACGATAAGGGGATTGTAAGAGGTGTGAAGAAGATGATGCTGCTTATGGCTTTGGTGGAGGTTGTGAATTTCCCATTAGCTGTTTGCGGAGGGATTGTTCGAGGAACAGCGAGGCCATGGTTGGCTATGTATGCAAATCTTGGTGGATTCTACCTTCTGGCTTTGCCCTTGGGAGTTGTTTTAGCTTTCAAGGTTAAACTCGGGCTGAGTGGACTATTGATAGGATTCTTGATTGGGATGGTTGCTTGCTTGATTTTGTTGCTGATCTTTGTTTTAAGAATCAACTGGGATGAAGAAGCGTGCAAAGCACAAAGACTTGCCTCACTTTCCTGTCAAGCACCAGAACTTAACAAACACGAAAACCACAAAAGCGTGGGGAGAGTCGATGCCGAAGTCTAA

Protein Analysis

472

Amino Acids

51.06

Weight (kDa)

8.79

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 14 - 173 3.2e-31 MatE
MatE PF01554 237 - 399 3.8e-30 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 734, 922
AccB1I GGYRCC 1 cut(s) 191
AccI GTMKAC 1 cut(s) 872
AciI CCGC 3 cut(s) 414, 654, 1107
AclWI GGATC 1 cut(s) 575
AcoI YGGCCR 2 cut(s) 343, 769
AcsI RAATTY 1 cut(s) 1087
AfaI GTAC 2 cut(s) 816, 920
AfiI CCNNNNNNNGG 2 cut(s) 209, 1027
AflIII ACRYGT 1 cut(s) 863
AgsI TTSAA 5 cut(s) 119, 363, 445, 620, 1210
AjnI CCWGG 1 cut(s) 992
AloI GAACNNNNNNTCC 2 cut(s) 1101, 1133
AluBI AGCT 8 cut(s) 13, 35, 92, 115, 700, 892, 1100, 1205
AluI AGCT 8 cut(s) 13, 35, 92, 115, 700, 892, 1100, 1205
Alw21I GWGCWC 2 cut(s) 15, 894
Alw26I GTCTC 5 cut(s) 188, 858, 886, 942, 961
AlwI GGATC 1 cut(s) 575
AlwNI CAGNNNCTG 1 cut(s) 914
Ama87I CYCGRG 2 cut(s) 876, 1220
AoxI GGCC 3 cut(s) 343, 769, 1133
ApeKI GCWGC 3 cut(s) 714, 989, 1060
ApoI RAATTY 1 cut(s) 1087
AspS9I GGNCC 4 cut(s) 664, 707, 757, 911
AsuHPI GGTGA 3 cut(s) 151, 856, 991
AvaI CYCGRG 2 cut(s) 876, 1220
AvaII GGWCC 4 cut(s) 664, 707, 757, 911
BaeI ACNNNNGTAYC 2 cut(s) 902, 935
BalI TGGCCA 1 cut(s) 345
BanI GGYRCC 1 cut(s) 191
BanII GRGCYC 3 cut(s) 15, 204, 894
BbsI GAAGAC 1 cut(s) 109
Bbv12I GWGCWC 2 cut(s) 15, 894
BbvI GCAGC 3 cut(s) 701, 1001, 1047
BccI CCATC 4 cut(s) 89, 818, 976, 1252
BciT130I CCWGG 1 cut(s) 994
BcoDI GTCTC 5 cut(s) 188, 858, 886, 942, 961
BfaI CTAG 2 cut(s) 98, 731
BfuAI ACCTGC 2 cut(s) 734, 922
BglI GCCNNNNNGGC 1 cut(s) 791
BisI GCNGC 3 cut(s) 715, 990, 1061
BlsI GCNGC 3 cut(s) 716, 991, 1062
Bme1390I CCNGG 1 cut(s) 994
Bme18I GGWCC 4 cut(s) 664, 707, 757, 911
BmeT110I CYCGRG 2 cut(s) 876, 1220
BmgT120I GGNCC 4 cut(s) 664, 707, 757, 911
BmiI GGNNCC 4 cut(s) 193, 201, 226, 465
BmrFI CCNGG 1 cut(s) 994
BmrI ACTGGG 1 cut(s) 1315
BmsI GCATC 4 cut(s) 465, 837, 1047, 1396
BmuI ACTGGG 1 cut(s) 1315
BoxI GACNNNNGTC 1 cut(s) 878
BpiI GAAGAC 1 cut(s) 109
Bpu10I CCTNAGC 1 cut(s) 481
BpuEI CTTGAG 2 cut(s) 196, 680
BsaI GGTCTC 2 cut(s) 188, 961
BsaJI CCNNGG 5 cut(s) 195, 667, 993, 1136, 1188
BsaXI ACNNNNNCTCC 2 cut(s) 1101, 1131
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 1027
Bse118I RCCGGY 2 cut(s) 161, 771
Bse1I ACTGG 3 cut(s) 126, 772, 1310
Bse3DI GCAATG 2 cut(s) 416, 561
BseBI CCWGG 1 cut(s) 994
BseDI CCNNGG 5 cut(s) 195, 667, 993, 1136, 1188
BseGI GGATG 3 cut(s) 333, 1263, 1315
BseLI CCNNNNNNNGG 2 cut(s) 209, 1027
BseMI GCAATG 2 cut(s) 416, 561
BseMII CTCAG 3 cut(s) 328, 495, 1217
BseNI ACTGG 3 cut(s) 126, 772, 1310
BseXI GCAGC 3 cut(s) 701, 1001, 1047
BshFI GGCC 3 cut(s) 345, 771, 1135
BshNI GGYRCC 1 cut(s) 191
BsiHKAI GWGCWC 2 cut(s) 15, 894
BsiHKCI CYCGRG 2 cut(s) 876, 1220
BsiSI CCGG 2 cut(s) 162, 772
BslFI GGGAC 1 cut(s) 411
BslI CCNNNNNNNGG 2 cut(s) 209, 1027
BsmAI GTCTC 5 cut(s) 188, 858, 886, 942, 961
BsmFI GGGAC 1 cut(s) 411
BsnI GGCC 3 cut(s) 345, 771, 1135
Bso31I GGTCTC 2 cut(s) 188, 961
BsoBI CYCGRG 2 cut(s) 876, 1220
Bsp1286I GDGCHC 3 cut(s) 15, 204, 894
Bsp143I GATC 2 cut(s) 567, 1284
Bsp19I CCATGG 2 cut(s) 195, 1136
BspACI CCGC 3 cut(s) 414, 654, 1107
BspANI GGCC 3 cut(s) 345, 771, 1135
BspCNI CTCAG 3 cut(s) 327, 494, 1218
BspLI GGNNCC 4 cut(s) 193, 201, 226, 465
BspMI ACCTGC 2 cut(s) 734, 922
BspPI GGATC 1 cut(s) 575
BspT107I GGYRCC 1 cut(s) 191
BspTNI GGTCTC 2 cut(s) 188, 961
BsrDI GCAATG 2 cut(s) 416, 561
BsrFI RCCGGY 2 cut(s) 161, 771
BsrI ACTGG 3 cut(s) 126, 772, 1310
BssAI RCCGGY 2 cut(s) 161, 771
BssECI CCNNGG 5 cut(s) 195, 667, 993, 1136, 1188
BssMI GATC 2 cut(s) 567, 1284
BssT1I CCWWGG 4 cut(s) 195, 667, 1136, 1188
Bst2UI CCWGG 1 cut(s) 994
Bst4CI ACNGT 2 cut(s) 367, 463
Bst6I CTCTTC 1 cut(s) 297
BstAPI GCANNNNNTGC 2 cut(s) 866, 914
BstC8I GCNNGC 6 cut(s) 525, 773, 777, 792, 1267, 1321
BstDEI CTNAG 3 cut(s) 314, 481, 1226
BstDSI CCRYGG 2 cut(s) 195, 1136
BstF5I GGATG 3 cut(s) 333, 1263, 1315
BstKTI GATC 2 cut(s) 570, 1287
BstMAI GTCTC 5 cut(s) 188, 858, 886, 942, 961
BstMBI GATC 2 cut(s) 567, 1284
BstMWI GCNNNNNNNGC 9 cut(s) 10, 77, 224, 791, 866, 905, 914, 1151, 1325
BstNI CCWGG 1 cut(s) 994
BstNSI RCATGY 1 cut(s) 867
BstPAI GACNNNNGTC 1 cut(s) 878
BstSCI CCNGG 1 cut(s) 992
BstV1I GCAGC 3 cut(s) 701, 1001, 1047
BstV2I GAAGAC 1 cut(s) 109
BsuRI GGCC 3 cut(s) 345, 771, 1135
BtgI CCRYGG 2 cut(s) 195, 1136
BtsCI GGATG 3 cut(s) 333, 1263, 1315
BtsI GCAGTG 1 cut(s) 951
BtsIMutI CAGTG 3 cut(s) 322, 570, 951
BveI ACCTGC 2 cut(s) 734, 922
Cac8I GCNNGC 6 cut(s) 525, 773, 777, 792, 1267, 1321
CaiI CAGNNNCTG 1 cut(s) 914
Cfr10I RCCGGY 2 cut(s) 161, 771
Cfr13I GGNCC 4 cut(s) 664, 707, 757, 911
CseI GACGC 1 cut(s) 858
Csp6I GTAC 2 cut(s) 815, 919
CspCI CAANNNNNGTGG 2 cut(s) 685, 720
CviAII CATG 5 cut(s) 63, 196, 472, 864, 1137
CviQI GTAC 2 cut(s) 815, 919
DdeI CTNAG 3 cut(s) 314, 481, 1226
DpnI GATC 2 cut(s) 569, 1286
DpnII GATC 2 cut(s) 567, 1284
EaeI YGGCCR 2 cut(s) 343, 769
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Ecl136II GAGCTC 2 cut(s) 13, 892
Eco130I CCWWGG 4 cut(s) 195, 667, 1136, 1188
Eco24I GRGCYC 3 cut(s) 15, 204, 894
Eco31I GGTCTC 2 cut(s) 188, 961
Eco47I GGWCC 4 cut(s) 664, 707, 757, 911
Eco53kI GAGCTC 2 cut(s) 13, 892
Eco88I CYCGRG 2 cut(s) 876, 1220
EcoICRI GAGCTC 2 cut(s) 13, 892
EcoO109I RGGNCCY 1 cut(s) 911
EcoRII CCWGG 1 cut(s) 992
EcoT14I CCWWGG 4 cut(s) 195, 667, 1136, 1188
EcoT38I GRGCYC 3 cut(s) 15, 204, 894
ErhI CCWWGG 4 cut(s) 195, 667, 1136, 1188
FaeI CATG 5 cut(s) 66, 199, 475, 867, 1140
FaqI GGGAC 1 cut(s) 411
FatI CATG 5 cut(s) 62, 195, 471, 863, 1136
FauI CCCGC 1 cut(s) 647
FauNDI CATATG 1 cut(s) 220
FblI GTMKAC 1 cut(s) 872
Fnu4HI GCNGC 3 cut(s) 715, 990, 1061
FokI GGATG 3 cut(s) 320, 1270, 1322
FriOI GRGCYC 3 cut(s) 15, 204, 894
Fsp4HI GCNGC 3 cut(s) 715, 990, 1061
FspBI CTAG 2 cut(s) 98, 731
GluI GCNGC 3 cut(s) 715, 990, 1061
HaeIII GGCC 3 cut(s) 345, 771, 1135
HapII CCGG 2 cut(s) 162, 772
HgaI GACGC 1 cut(s) 858
Hin1II CATG 5 cut(s) 66, 199, 475, 867, 1140
HincII GTYRAC 3 cut(s) 322, 765, 873
HindII GTYRAC 3 cut(s) 322, 765, 873
HindIII AAGCTT 1 cut(s) 698
HinfI GANTC 9 cut(s) 105, 589, 751, 874, 879, 1167, 1245, 1299, 1401
HpaI GTTAAC 1 cut(s) 765
HpaII CCGG 2 cut(s) 162, 772
HphI GGTGA 3 cut(s) 151, 856, 991
Hpy166II GTNNAC 5 cut(s) 322, 707, 765, 873, 1232
Hpy188I TCNGA 4 cut(s) 10, 110, 800, 896
Hpy188III TCNNGA 4 cut(s) 175, 565, 677, 1249
Hpy8I GTNNAC 5 cut(s) 322, 707, 765, 873, 1232
Hpy99I CGWCG 1 cut(s) 874
HpyAV CCTTC 6 cut(s) 266, 477, 629, 633, 644, 1184
HpyCH4III ACNGT 2 cut(s) 367, 463
HpyCH4V TGCA 8 cut(s) 287, 371, 527, 554, 599, 929, 1154, 1323
HpyF10VI GCNNNNNNNGC 9 cut(s) 10, 77, 224, 791, 866, 905, 914, 1151, 1325
HpyF3I CTNAG 3 cut(s) 314, 481, 1226
Hsp92II CATG 5 cut(s) 66, 199, 475, 867, 1140
KroI GCCGGC 1 cut(s) 771
KroNI GCCGGC 1 cut(s) 773
KspAI GTTAAC 1 cut(s) 765
Kzo9I GATC 2 cut(s) 567, 1284
LmnI GCTCC 3 cut(s) 199, 224, 896
Lsp1109I GCAGC 3 cut(s) 701, 1001, 1047
LweI GCATC 4 cut(s) 465, 837, 1047, 1396
MaeI CTAG 2 cut(s) 98, 731
MaeIII GTNAC 2 cut(s) 157, 276
MalI GATC 2 cut(s) 569, 1286
MboI GATC 2 cut(s) 567, 1284
MboII GAAGA 6 cut(s) 114, 284, 365, 1060, 1063, 1325
MhlI GDGCHC 3 cut(s) 15, 204, 894
MlsI TGGCCA 1 cut(s) 345
MluCI AATT 2 cut(s) 600, 1087
MluNI TGGCCA 1 cut(s) 345
MlyI GAGTC 4 cut(s) 99, 868, 888, 1410
MmeI TCCRAC 1 cut(s) 778
Mox20I TGGCCA 1 cut(s) 345
MroNI GCCGGC 1 cut(s) 771
MscI TGGCCA 1 cut(s) 345
MseI TTAA 5 cut(s) 624, 764, 1215, 1295, 1368
MslI CAYNNNNRTG 1 cut(s) 307
Msp20I TGGCCA 1 cut(s) 345
MspI CCGG 2 cut(s) 162, 772
MspR9I CCNGG 1 cut(s) 994
MvaI CCWGG 1 cut(s) 994
MwoI GCNNNNNNNGC 9 cut(s) 10, 77, 224, 791, 866, 905, 914, 1151, 1325
NaeI GCCGGC 1 cut(s) 773
NcoI CCATGG 2 cut(s) 195, 1136
NdeI CATATG 1 cut(s) 220
NdeII GATC 2 cut(s) 567, 1284
NgoMIV GCCGGC 1 cut(s) 771
NlaIII CATG 5 cut(s) 66, 199, 475, 867, 1140
NlaIV GGNNCC 4 cut(s) 193, 201, 226, 465
NmuCI GTSAC 1 cut(s) 157
NspI RCATGY 1 cut(s) 867
PaeR7I CTCGAG 1 cut(s) 876
PciI ACATGT 1 cut(s) 863
PdiI GCCGGC 1 cut(s) 773
PfeI GAWTC 5 cut(s) 589, 751, 1167, 1245, 1299
PkrI GCNGC 3 cut(s) 716, 991, 1062
PleI GAGTC 4 cut(s) 99, 868, 887, 1409
PpsI GAGTC 4 cut(s) 99, 868, 887, 1409
PpuMI RGGWCCY 1 cut(s) 911
PscI ACATGT 1 cut(s) 863
PshAI GACNNNNGTC 1 cut(s) 878
Psp124BI GAGCTC 2 cut(s) 15, 894
Psp5II RGGWCCY 1 cut(s) 911
Psp6I CCWGG 1 cut(s) 992
PspGI CCWGG 1 cut(s) 992
PspN4I GGNNCC 4 cut(s) 193, 201, 226, 465
PspPI GGNCC 4 cut(s) 664, 707, 757, 911
PspPPI RGGWCCY 1 cut(s) 911
PspXI VCTCGAGB 1 cut(s) 876
PstNI CAGNNNCTG 1 cut(s) 914
RsaI GTAC 2 cut(s) 816, 920
RsaNI GTAC 2 cut(s) 815, 919
RseI CAYNNNNRTG 1 cut(s) 307
SacI GAGCTC 2 cut(s) 15, 894
SalI GTCGAC 1 cut(s) 871
SaqAI TTAA 5 cut(s) 624, 764, 1215, 1295, 1368
SatI GCNGC 3 cut(s) 715, 990, 1061
Sau3AI GATC 2 cut(s) 567, 1284
Sau96I GGNCC 4 cut(s) 664, 707, 757, 911
SchI GAGTC 4 cut(s) 99, 868, 888, 1410
ScrFI CCNGG 1 cut(s) 994
SduI GDGCHC 3 cut(s) 15, 204, 894
SfaNI GCATC 4 cut(s) 465, 837, 1047, 1396
Sfr274I CTCGAG 1 cut(s) 876
SinI GGWCC 4 cut(s) 664, 707, 757, 911
SlaI CTCGAG 1 cut(s) 876
SmiMI CAYNNNNRTG 1 cut(s) 307
SmlI CTYRAG 3 cut(s) 175, 695, 876
SmoI CTYRAG 3 cut(s) 175, 695, 876
Sse9I AATT 2 cut(s) 600, 1087
SsiI CCGC 3 cut(s) 414, 654, 1107
SspMI CTAG 2 cut(s) 98, 731
SstI GAGCTC 2 cut(s) 15, 894
StyD4I CCNGG 1 cut(s) 992
StyI CCWWGG 4 cut(s) 195, 667, 1136, 1188
TaaI ACNGT 2 cut(s) 367, 463
TaqI TCGA 5 cut(s) 825, 872, 877, 1120, 1404
TasI AATT 2 cut(s) 600, 1087
TfiI GAWTC 5 cut(s) 589, 751, 1167, 1245, 1299
Tru1I TTAA 5 cut(s) 624, 764, 1215, 1295, 1368
Tru9I TTAA 5 cut(s) 624, 764, 1215, 1295, 1368
TscAI CASTG 3 cut(s) 322, 577, 951
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 3 cut(s) 714, 989, 1060
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 3 cut(s) 68, 291, 1326
TspRI CASTG 3 cut(s) 322, 577, 951
VpaK11BI GGWCC 4 cut(s) 664, 707, 757, 911
XapI RAATTY 1 cut(s) 1087
XceI RCATGY 1 cut(s) 867
XhoI CTCGAG 1 cut(s) 876
XmiI GTMKAC 1 cut(s) 872
XspI CTAG 2 cut(s) 98, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.