AT3G54750

Protein downstream neighbor of

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
20264634 .. 20268885
4252 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G54750.2

Sequence Viewer

Length: 1770 bp
ATGACGAAAGTAGTTGCTAAGAGGAAGACGCCTTCTGAACTGAGAGGAGAACAATTGAAACGGACTGCTTTTGTGGACCAAGCTAAAGAAGCTTTTGATGCATTGCGTCCTTGCAAAAGTGCTGAGAGAGAAAATGGGTTCAAGAAATCAGAGCTTTCGAAGAATCCAAAATACATTGAGATGCGTATGGATGAACTGTATCCTGTCAAAAAGGCTAGGCCTTGGATGCTCTCTGGCAAAGAAAACTCTAAGGAAAATGGTGCGAAGCAATCCAGCAGCCTAATCAATGTTTCTTTACTCTCGAATCTTGCTGCCACCAAAAGACAACTTATTCGTGAGGAGAATAATGCTTCTACTGAAGTTCCTGATGACACTAAGGCTGAAGCTCGTCAAACAAATGAGAGATGTAGCCAGAGCATATTTCGCAGTGTCACACAACTTTCAACCAGGGGTGAAGAATTATCCTGCTTGCCAGATATTGATATGAACAAAGCATTGAAAGGACTTGCTACTTGTGAACCTTTGCTGGTTCATCCTGGCGACATAACTGGGGAAGATGATACTGCTTCATTAAGTGGAAGTTTCATGTCCGAGTTTCAAGTTTCTGGGCAGAAGATTCCTCTGGACCTTTCCTTGAAGACTTATGCTCGACTTGTTTCCTCTTCTCCATTAAGTTGGTTACATAGATCAATCATGGGTAGCACATACAATGGTATGCCACAGCTGAAGTCGCTGTCGTGTAATGTGGTAAATCAAGATAACAGTAGTGGTTCTGGAGCATCTGTGGTTTCCCAGGTGTTAAATTCCATGTCACTACACTCGTGGGTTTATCCTCAGTCCACCTTGCCACCTTTTGTCATATCGGCAATGGTGGCATCTGTATCAGACAGAGGTGAAGTTGATTTCCTACAAAAGCGAAAATTGGCATGGGAGGATGCATTTCGAAGTTTATATTTTATGTTTCGAAAGAATCTCTGCAAAGTATTTTATGTCTGTACTTCTCAGTTTGTGGCAATGTTCACTGGAAGCTGTGAGTCAGGGGGTGCCAAACGCTCATGCAATGGCTATATCACCCAGTCAACTAGAAGATTGAGAGCCATGCTTAAAAATCTTGACATCTGCTACTCTATGCCTCTTTGCAAGACTAAAATGGATCAGACCACTGTTGAAGATCTTGCTGAGCTCTCAGAGTTAGAGAATCATAACATTGGCCAGATTCGTCGTTCGCGTTCTGTCTCAAACATTGATAATACTCCAGAATCTTTCTTGGCCTTTGTCGGAAATGAGAGCGTACATGGATTGTATGATCTTCTGTTAAATTATAGGTATTCTTTTGAATTTCTTCCTACCGCAGATGTTCCTGTATTATCTTCACCAGTGCCATTTCAGAATGCTGCACTGTCTTCTCCCGAGATCAAATGCTCTGAGATGGTAAAAACAGAACATACAAGTTGCTACATGGTTGAGATTAAAGGTGAATATATTCCGCCGTGGATTATTAGCAATATATGTGCAAATGTGGGTGCTAATGGACAAAACTTTGAAGCCAGCTTTGTGACCGAGCCAACCTCGGTTAATTTAAACATTGGTCTACCACAAGTCCCTGAGAAGACAGACCCTGAGTCTAGAGTCATAGAAGGCACAGGAGAAACAAACGACAATGCGTCGGACATTCCTGGATCAGTGATCTGTCCTCAGCTTCAATCAGGCCATCTAAAGAACTTAAAGTATTGCAACAAGTCTTACACGGTTTCGCTGTCTCCTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

589

Amino Acids

65.23

Weight (kDa)

7.02

Isoelectric Point (pI)

53.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1043
AccI GTMKAC 1 cut(s) 1591
AccII CGCG 1 cut(s) 1228
AciI CCGC 2 cut(s) 1350, 1487
AclWI GGATC 2 cut(s) 1161, 1687
AcoI YGGCCR 1 cut(s) 1210
AcsI RAATTY 2 cut(s) 802, 1337
AcuI CTGAAG 3 cut(s) 378, 402, 746
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 2 cut(s) 997, 1293
AhdI GACNNNNNGTC 2 cut(s) 1621, 1663
AjnI CCWGG 4 cut(s) 446, 535, 792, 1675
AluBI AGCT 9 cut(s) 83, 92, 154, 386, 724, 1029, 1183, 1551, 1699
AluI AGCT 9 cut(s) 83, 92, 154, 386, 724, 1029, 1183, 1551, 1699
Alw21I GWGCWC 1 cut(s) 1185
Alw26I GTCTC 2 cut(s) 1240, 1764
AlwI GGATC 2 cut(s) 1161, 1687
AlwNI CAGNNNCTG 1 cut(s) 1619
Ama87I CYCGRG 1 cut(s) 1409
AoxI GGCC 4 cut(s) 218, 1210, 1269, 1708
ApeKI GCWGC 3 cut(s) 276, 311, 1394
ApoI RAATTY 2 cut(s) 802, 1337
ArsI GACNNNNNNTTYG 2 cut(s) 315, 347
Asp700I GAANNNNTTC 2 cut(s) 1341, 1482
AspS9I GGNCC 2 cut(s) 76, 625
AsuHPI GGTGA 5 cut(s) 464, 905, 1063, 1365, 1487
AsuII TTCGAA 3 cut(s) 158, 943, 964
AvaI CYCGRG 1 cut(s) 1409
AvaII GGWCC 2 cut(s) 76, 625
BalI TGGCCA 1 cut(s) 1212
BanI GGYRCC 1 cut(s) 1043
BanII GRGCYC 1 cut(s) 1185
BauI CACGAG 1 cut(s) 820
BbsI GAAGAC 4 cut(s) 32, 644, 1395, 1616
Bbv12I GWGCWC 1 cut(s) 1185
BbvCI CCTCAGC 1 cut(s) 1695
BbvI GCAGC 3 cut(s) 288, 298, 1381
BccI CCATC 2 cut(s) 1423, 1719
BceAI ACGGC 1 cut(s) 1474
BciT130I CCWGG 4 cut(s) 448, 537, 794, 1677
BciVI GTATCC 1 cut(s) 210
BcoDI GTCTC 2 cut(s) 1240, 1764
BfaI CTAG 3 cut(s) 216, 1083, 1626
BfuI GTATCC 1 cut(s) 210
BglII AGATCT 1 cut(s) 1171
BisI GCNGC 3 cut(s) 277, 312, 1395
BlpI GCTNAGC 1 cut(s) 1179
BlsI GCNGC 3 cut(s) 278, 313, 1396
Bme1390I CCNGG 4 cut(s) 448, 537, 794, 1677
Bme18I GGWCC 2 cut(s) 76, 625
BmeRI GACNNNNNGTC 2 cut(s) 1621, 1663
BmeT110I CYCGRG 1 cut(s) 1409
BmgT120I GGNCC 2 cut(s) 76, 625
BmiI GGNNCC 1 cut(s) 1045
BmrFI CCNGG 4 cut(s) 448, 537, 794, 1677
BmrI ACTGGG 2 cut(s) 558, 1069
BmsI GCATC 6 cut(s) 88, 171, 216, 788, 884, 925
BmuI ACTGGG 2 cut(s) 558, 1069
BpiI GAAGAC 4 cut(s) 32, 644, 1395, 1616
BplI GAGNNNNNCTC 2 cut(s) 1553, 1585
BpmI CTGGAG 2 cut(s) 795, 1239
Bpu10I CCTNAGC 1 cut(s) 1695
Bpu1102I GCTNAGC 1 cut(s) 1179
Bpu14I TTCGAA 3 cut(s) 158, 943, 964
BsaHI GRCGYC 1 cut(s) 29
BsaJI CCNNGG 5 cut(s) 221, 447, 792, 1490, 1569
BsaXI ACNNNNNCTCC 2 cut(s) 768, 798
Bse1I ACTGG 4 cut(s) 553, 1027, 1075, 1376
Bse3DI GCAATG 4 cut(s) 101, 873, 1020, 1066
BseBI CCWGG 4 cut(s) 448, 537, 794, 1677
BseDI CCNNGG 5 cut(s) 221, 447, 792, 1490, 1569
BseGI GGATG 4 cut(s) 196, 231, 532, 940
BseMI GCAATG 4 cut(s) 101, 873, 1020, 1066
BseNI ACTGG 4 cut(s) 553, 1027, 1075, 1376
BseRI GAGGAG 2 cut(s) 60, 353
BseXI GCAGC 3 cut(s) 288, 298, 1381
BsgI GTGCAG 1 cut(s) 1380
Bsh1236I CGCG 1 cut(s) 1228
BshFI GGCC 4 cut(s) 220, 1212, 1271, 1710
BshNI GGYRCC 1 cut(s) 1043
BsiHKAI GWGCWC 1 cut(s) 1185
BsiHKCI CYCGRG 1 cut(s) 1409
BslFI GGGAC 1 cut(s) 1586
BsmAI GTCTC 2 cut(s) 1240, 1764
BsmFI GGGAC 1 cut(s) 1586
BsmI GAATGC 1 cut(s) 1396
BsnI GGCC 4 cut(s) 220, 1212, 1271, 1710
BsoBI CYCGRG 1 cut(s) 1409
Bsp119I TTCGAA 3 cut(s) 158, 943, 964
Bsp1286I GDGCHC 1 cut(s) 1185
Bsp143I GATC 7 cut(s) 686, 1153, 1171, 1306, 1413, 1679, 1686
Bsp1720I GCTNAGC 1 cut(s) 1179
BspACI CCGC 2 cut(s) 1350, 1487
BspANI GGCC 4 cut(s) 220, 1212, 1271, 1710
BspFNI CGCG 1 cut(s) 1228
BspLI GGNNCC 1 cut(s) 1045
BspPI GGATC 2 cut(s) 1161, 1687
BspT104I TTCGAA 3 cut(s) 158, 943, 964
BspT107I GGYRCC 1 cut(s) 1043
BsrDI GCAATG 4 cut(s) 101, 873, 1020, 1066
BsrI ACTGG 4 cut(s) 553, 1027, 1075, 1376
BssECI CCNNGG 5 cut(s) 221, 447, 792, 1490, 1569
BssMI GATC 7 cut(s) 686, 1153, 1171, 1306, 1413, 1679, 1686
BssNI GRCGYC 1 cut(s) 29
BssSI CACGAG 1 cut(s) 820
BssT1I CCWWGG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 820
Bst2UI CCWGG 4 cut(s) 448, 537, 794, 1677
Bst4CI ACNGT 5 cut(s) 198, 764, 1165, 1401, 1750
Bst6I CTCTTC 1 cut(s) 667
BstACI GRCGYC 1 cut(s) 29
BstBI TTCGAA 3 cut(s) 158, 943, 964
BstC8I GCNNGC 2 cut(s) 470, 1549
BstDSI CCRYGG 1 cut(s) 1490
BstF5I GGATG 4 cut(s) 196, 231, 532, 940
BstFNI CGCG 1 cut(s) 1228
BstKTI GATC 7 cut(s) 689, 1156, 1174, 1309, 1416, 1682, 1689
BstMAI GTCTC 2 cut(s) 1240, 1764
BstMBI GATC 7 cut(s) 686, 1153, 1171, 1306, 1413, 1679, 1686
BstMWI GCNNNNNNNGC 6 cut(s) 89, 98, 226, 423, 730, 872
BstNI CCWGG 4 cut(s) 448, 537, 794, 1677
BstSCI CCNGG 4 cut(s) 446, 535, 792, 1675
BstUI CGCG 1 cut(s) 1228
BstV1I GCAGC 3 cut(s) 288, 298, 1381
BstV2I GAAGAC 4 cut(s) 32, 644, 1395, 1616
BstX2I RGATCY 1 cut(s) 1171
BstXI CCANNNNNNTGG 1 cut(s) 675
BstYI RGATCY 1 cut(s) 1171
BsuI GTATCC 1 cut(s) 210
BsuRI GGCC 4 cut(s) 220, 1212, 1271, 1710
BtgI CCRYGG 1 cut(s) 1490
BtsCI GGATG 4 cut(s) 196, 231, 532, 940
BtsI GCAGTG 1 cut(s) 433
BtsIMutI CAGTG 6 cut(s) 433, 1020, 1161, 1383, 1397, 1689
Cac8I GCNNGC 2 cut(s) 470, 1549
CaiI CAGNNNCTG 1 cut(s) 1619
Cfr13I GGNCC 2 cut(s) 76, 625
CseI GACGC 3 cut(s) 37, 95, 1653
Csp6I GTAC 2 cut(s) 996, 1292
CviAII CATG 8 cut(s) 586, 694, 808, 927, 1056, 1099, 1295, 1459
CviQI GTAC 2 cut(s) 996, 1292
DpnI GATC 7 cut(s) 688, 1155, 1173, 1308, 1415, 1681, 1688
DpnII GATC 7 cut(s) 686, 1153, 1171, 1306, 1413, 1679, 1686
DraI TTTAAA 1 cut(s) 1581
DriI GACNNNNNGTC 2 cut(s) 1621, 1663
EaeI YGGCCR 1 cut(s) 1210
Eam1104I CTCTTC 1 cut(s) 667
Eam1105I GACNNNNNGTC 2 cut(s) 1621, 1663
EarI CTCTTC 1 cut(s) 667
EciI GGCGGA 1 cut(s) 1476
Ecl136II GAGCTC 1 cut(s) 1183
Eco130I CCWWGG 1 cut(s) 221
Eco147I AGGCCT 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 1185
Eco47I GGWCC 2 cut(s) 76, 625
Eco53kI GAGCTC 1 cut(s) 1183
Eco57I CTGAAG 3 cut(s) 378, 402, 746
Eco88I CYCGRG 1 cut(s) 1409
EcoICRI GAGCTC 1 cut(s) 1183
EcoRII CCWGG 4 cut(s) 446, 535, 792, 1675
EcoT14I CCWWGG 1 cut(s) 221
EcoT22I ATGCAT 2 cut(s) 103, 940
EcoT38I GRGCYC 1 cut(s) 1185
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 8 cut(s) 589, 697, 811, 930, 1059, 1102, 1298, 1462
FaqI GGGAC 1 cut(s) 1586
FatI CATG 8 cut(s) 585, 693, 807, 926, 1055, 1098, 1294, 1458
FblI GTMKAC 1 cut(s) 1591
Fnu4HI GCNGC 3 cut(s) 277, 312, 1395
FokI GGATG 4 cut(s) 203, 238, 519, 947
FriOI GRGCYC 1 cut(s) 1185
Fsp4HI GCNGC 3 cut(s) 277, 312, 1395
FspBI CTAG 3 cut(s) 216, 1083, 1626
GluI GCNGC 3 cut(s) 277, 312, 1395
GsuI CTGGAG 2 cut(s) 795, 1239
HaeIII GGCC 4 cut(s) 220, 1212, 1271, 1710
HgaI GACGC 3 cut(s) 37, 95, 1653
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 8 cut(s) 589, 697, 811, 930, 1059, 1102, 1298, 1462
HincII GTYRAC 1 cut(s) 1080
HindII GTYRAC 1 cut(s) 1080
HindIII AAGCTT 1 cut(s) 90
HphI GGTGA 5 cut(s) 464, 905, 1063, 1365, 1487
Hpy166II GTNNAC 6 cut(s) 76, 518, 840, 1020, 1080, 1592
Hpy8I GTNNAC 6 cut(s) 76, 518, 840, 1020, 1080, 1592
Hpy99I CGWCG 2 cut(s) 1224, 1669
HpyAV CCTTC 2 cut(s) 42, 1631
HpyCH4III ACNGT 5 cut(s) 198, 764, 1165, 1401, 1750
HpyCH4V TGCA 9 cut(s) 101, 114, 938, 978, 1059, 1140, 1397, 1514, 1734
HpyF10VI GCNNNNNNNGC 6 cut(s) 89, 98, 226, 423, 730, 872
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 8 cut(s) 589, 697, 811, 930, 1059, 1102, 1298, 1462
Kzo9I GATC 7 cut(s) 686, 1153, 1171, 1306, 1413, 1679, 1686
LmnI GCTCC 1 cut(s) 776
Lsp1109I GCAGC 3 cut(s) 288, 298, 1381
LweI GCATC 6 cut(s) 88, 171, 216, 788, 884, 925
MaeI CTAG 3 cut(s) 216, 1083, 1626
MaeIII GTNAC 4 cut(s) 430, 678, 810, 1555
MalI GATC 7 cut(s) 688, 1155, 1173, 1308, 1415, 1681, 1688
MboI GATC 7 cut(s) 686, 1153, 1171, 1306, 1413, 1679, 1686
MfeI CAATTG 1 cut(s) 53
MflI RGATCY 1 cut(s) 1171
MhlI GDGCHC 1 cut(s) 1185
MlsI TGGCCA 1 cut(s) 1212
MluCI AATT 7 cut(s) 53, 458, 802, 920, 1318, 1337, 1576
MluNI TGGCCA 1 cut(s) 1212
MlyI GAGTC 3 cut(s) 1043, 1631, 1638
MmeI TCCRAC 2 cut(s) 1258, 1647
Mox20I TGGCCA 1 cut(s) 1212
Mph1103I ATGCAT 2 cut(s) 103, 940
MroXI GAANNNNTTC 2 cut(s) 1341, 1482
MscI TGGCCA 1 cut(s) 1212
MseI TTAA 9 cut(s) 572, 671, 800, 1104, 1316, 1470, 1575, 1580, 1724
MslI CAYNNNNRTG 1 cut(s) 179
Msp20I TGGCCA 1 cut(s) 1212
MspA1I CMGCKG 1 cut(s) 724
MspR9I CCNGG 4 cut(s) 448, 537, 794, 1677
MunI CAATTG 1 cut(s) 53
Mva1269I GAATGC 1 cut(s) 1396
MvaI CCWGG 4 cut(s) 448, 537, 794, 1677
MvnI CGCG 1 cut(s) 1228
MwoI GCNNNNNNNGC 6 cut(s) 89, 98, 226, 423, 730, 872
NdeII GATC 7 cut(s) 686, 1153, 1171, 1306, 1413, 1679, 1686
NlaIII CATG 8 cut(s) 589, 697, 811, 930, 1059, 1102, 1298, 1462
NlaIV GGNNCC 1 cut(s) 1045
NmuCI GTSAC 3 cut(s) 430, 810, 1555
NsiI ATGCAT 2 cut(s) 103, 940
NspV TTCGAA 3 cut(s) 158, 943, 964
PceI AGGCCT 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 1225
PctI GAATGC 1 cut(s) 1396
PdmI GAANNNNTTC 2 cut(s) 1341, 1482
PfeI GAWTC 7 cut(s) 163, 304, 616, 970, 1198, 1216, 1259
PfoI TCCNGGA 1 cut(s) 1675
PkrI GCNGC 3 cut(s) 278, 313, 1396
PleI GAGTC 3 cut(s) 1042, 1630, 1637
PpsI GAGTC 3 cut(s) 1042, 1630, 1637
Psp124BI GAGCTC 1 cut(s) 1185
Psp6I CCWGG 4 cut(s) 446, 535, 792, 1675
PspGI CCWGG 4 cut(s) 446, 535, 792, 1675
PspN4I GGNNCC 1 cut(s) 1045
PspPI GGNCC 2 cut(s) 76, 625
PstNI CAGNNNCTG 1 cut(s) 1619
PsuI RGATCY 1 cut(s) 1171
PvuII CAGCTG 1 cut(s) 724
RsaI GTAC 2 cut(s) 997, 1293
RsaNI GTAC 2 cut(s) 996, 1292
RseI CAYNNNNRTG 1 cut(s) 179
SacI GAGCTC 1 cut(s) 1185
SaqAI TTAA 9 cut(s) 572, 671, 800, 1104, 1316, 1470, 1575, 1580, 1724
SatI GCNGC 3 cut(s) 277, 312, 1395
Sau3AI GATC 7 cut(s) 686, 1153, 1171, 1306, 1413, 1679, 1686
Sau96I GGNCC 2 cut(s) 76, 625
SchI GAGTC 3 cut(s) 1043, 1631, 1638
ScrFI CCNGG 4 cut(s) 448, 537, 794, 1677
SduI GDGCHC 1 cut(s) 1185
SfaNI GCATC 6 cut(s) 88, 171, 216, 788, 884, 925
SfuI TTCGAA 3 cut(s) 158, 943, 964
SinI GGWCC 2 cut(s) 76, 625
SmiMI CAYNNNNRTG 1 cut(s) 179
Sse9I AATT 7 cut(s) 53, 458, 802, 920, 1318, 1337, 1576
SseBI AGGCCT 1 cut(s) 220
SsiI CCGC 2 cut(s) 1350, 1487
SspMI CTAG 3 cut(s) 216, 1083, 1626
SstI GAGCTC 1 cut(s) 1185
StuI AGGCCT 1 cut(s) 220
StyD4I CCNGG 4 cut(s) 446, 535, 792, 1675
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 5 cut(s) 198, 764, 1165, 1401, 1750
TaqI TCGA 5 cut(s) 158, 302, 649, 943, 964
TaqII GACCGA 1 cut(s) 1574
TasI AATT 7 cut(s) 53, 458, 802, 920, 1318, 1337, 1576
TatI WGTACW 1 cut(s) 995
TfiI GAWTC 7 cut(s) 163, 304, 616, 970, 1198, 1216, 1259
Tru1I TTAA 9 cut(s) 572, 671, 800, 1104, 1316, 1470, 1575, 1580, 1724
Tru9I TTAA 9 cut(s) 572, 671, 800, 1104, 1316, 1470, 1575, 1580, 1724
TscAI CASTG 6 cut(s) 433, 1027, 1168, 1383, 1404, 1689
TseFI GTSAC 3 cut(s) 430, 810, 1555
TseI GCWGC 3 cut(s) 276, 311, 1394
Tsp45I GTSAC 3 cut(s) 430, 810, 1555
TspDTI ATGAA 5 cut(s) 207, 500, 521, 558, 574
TspGWI ACGGA 1 cut(s) 76
TspRI CASTG 6 cut(s) 433, 1027, 1168, 1383, 1404, 1689
VpaK11BI GGWCC 2 cut(s) 76, 625
XapI RAATTY 2 cut(s) 802, 1337
XbaI TCTAGA 1 cut(s) 1625
XmiI GTMKAC 1 cut(s) 1591
XmnI GAANNNNTTC 2 cut(s) 1341, 1482
XspI CTAG 3 cut(s) 216, 1083, 1626
Zsp2I ATGCAT 2 cut(s) 103, 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.