RLG00000023723

Protein downstream neighbor of

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
27459604 .. 27466970
7367 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023723

Sequence Viewer

Length: 1767 bp
ATGTCGGAAGAGCAGTTAAAGCGGATGAATGCTGCGGAGATCATGGATGAGTCTCCAGCCCATTTGCTTGGTTCTGCAATCGAGGCAGACAATGGGCTTAAGAAACCAGAATTGTCAAGGATTCCTAGATATCATGACATCCGTATGGATGAAGTATATCCTGCAAAGAAATCTAGGTCCAGAATGCTATTTGGAAAGGAAAATGTCAAGGAAAGTATTTCAATGGAGCCACCTATCAGCCTTAAGAGTCTCTCTGCGTGCTCTAGTCTAGCTTCCAAGAGAAAGCACCAACAAATGGGGCCAGAGATTGCAGCCGAAAGCACAGAAAAAGGTGTAGCTAAAGCGGGTCAAGCAAATGAAAACTCTAGTCAAAGTACCTTCCGTAGTGTTACTGAGATTTCATCGGCTGGTGATAGGTCATCTGGCTTTGGATCTGTTGATGTGGGTAAAGCAATGAAAGGAATGGCCGCCCTTGAATCCTCAATTGCTACTGGTTTACCTGCTAATTCTACTGAAAGATATGTGGATCCTTCATCAACTGGTTTTGGCAACTTTTGCTTGCCTGGTGGCAAGGTTCCTCTGGATTTTACTTTGAAAACTAGTATGCGAGTGGTTTCCTCTTCCCCAGCGAGTCGGATTCATAAGTCAATCACACGCTCCACATTCAAATTCGATAGTTTTGAAGATCAAATTATGAGCGGTAGTTCAGGGCTCACATCAACTTCTGAAGTCAGTTCTAAACTTTTACATTCATGGGTTTATCCTCAATCTACCCTGCCACCTTCTCTTATACAAGTGTTGACCTCCTCAACAGCCGAGGGAGTTGAAATGGATTTTTTAACAAAACGACATGTAGCATGGGAGGACTCATTTCGGAGTCTATACTACATGCTTCGAAATGGTGCCTGTAATATATTTTATGTGTGTACTCCATATTTTGTGGTAATGTTTACTAGTCGGGATGTTGCTGTGGGTACCAAACGCCTCACCAATGCTTGTATCTCCCAGTCAACAAGAGTCTTGCAATCATTGTTAAGAGAGAATGATGTTGCCTTCTCTATGCCCCTTTGCCGTTCTAAAGTGGAGCAAGTCACTACAGAAGTCCTTGAAGAACTCTCAGAGATGCAAGAATTGGGCCAGACTCGACGCACACGATCCTTGGTTGATTTGGATAATACTCCGGAATCTTTGCTGGTCATTAGTGGGAATAAGAATGTACATGGCCTGTTTGATATTTTATTAAATTATAGATCTTTCATGACTACTTTGATAGGAGCGGATGTTCCTGTATTATATTCACCTGTGCCATTTCAGAATGCTGCCATCTCTTCTCCACAGGTTAAATGCATGGATCTGAAAAGAACAGAACAGGTGGTTGCTTCAAACAAAGGATCTGTTTCACAAGATGTTGGATCTATGCAAAGCATATCTTCTGGTCTCTGCTCTAGTGTTGAAATTAAGGATGCATTTATTCCACCATGGATTATATGCAGTGTATGTGCTCTAGTGGGATCTGAAGGGGGAAGCTTTGAGGCGAGTTTCACAAATGAACCGACCTCAATCAGTTTGAATGGTTCAATAGAAGCAGCTGCTGAGAAATCTGATTCTCAAGATGGGATGGCTGAAGATTTGCAAAGTAGCAGTTCTGCTTTTGGTATTTCAAAAGCCATTGTAACACCAAACTTGCGCTTGGGTTTACTAAAGAGCTTGAAGTTTTCAAATGGTTCTTATATGGCTTCTGTTTCTCCTACCTTGGATTCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

589

Amino Acids

63.61

Weight (kDa)

6.09

Isoelectric Point (pI)

62.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 508
Acc65I GGTACC 1 cut(s) 974
AccB1I GGYRCC 2 cut(s) 902, 974
AccB7I CCANNNNNTGG 1 cut(s) 295
AccBSI CCGCTC 2 cut(s) 699, 1277
AccIII TCCGGA 1 cut(s) 1180
AciI CCGC 6 cut(s) 22, 35, 344, 468, 699, 1277
AclWI GGATC 8 cut(s) 439, 521, 534, 1149, 1359, 1399, 1420, 1519
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 1 cut(s) 668
AcuI CTGAAG 3 cut(s) 747, 1536, 1644
AfaI GTAC 4 cut(s) 376, 928, 976, 1218
AfiI CCNNNNNNNGG 1 cut(s) 295
AflII CTTAAG 2 cut(s) 98, 242
AflIII ACRYGT 1 cut(s) 850
AhlI ACTAGT 2 cut(s) 599, 953
AjnI CCWGG 1 cut(s) 562
AloI GAACNNNNNNTCC 2 cut(s) 1266, 1298
AluBI AGCT 5 cut(s) 272, 338, 1527, 1589, 1707
AluI AGCT 5 cut(s) 272, 338, 1527, 1589, 1707
Alw21I GWGCWC 2 cut(s) 263, 1504
Alw26I GTCTC 3 cut(s) 57, 254, 1442
AlwI GGATC 8 cut(s) 439, 521, 534, 1149, 1359, 1399, 1420, 1519
AlwNI CAGNNNCTG 1 cut(s) 1592
Aor13HI TCCGGA 1 cut(s) 1180
AoxI GGCC 4 cut(s) 299, 465, 1135, 1222
ApeKI GCWGC 5 cut(s) 32, 311, 1319, 1586, 1589
ApoI RAATTY 1 cut(s) 668
Asp718I GGTACC 1 cut(s) 974
AspLEI GCGC 1 cut(s) 1689
AspS9I GGNCC 3 cut(s) 177, 299, 1135
AsuHPI GGTGA 3 cut(s) 422, 979, 1290
AsuII TTCGAA 1 cut(s) 895
AvaII GGWCC 1 cut(s) 177
BamHI GGATCC 1 cut(s) 526
BanI GGYRCC 2 cut(s) 902, 974
BanII GRGCYC 1 cut(s) 714
Bbv12I GWGCWC 2 cut(s) 263, 1504
BbvI GCAGC 5 cut(s) 19, 323, 1306, 1576, 1598
BccI CCATC 3 cut(s) 1331, 1607, 1612
BceAI ACGGC 1 cut(s) 1056
BciT130I CCWGG 1 cut(s) 564
BcoDI GTCTC 3 cut(s) 57, 254, 1442
BcuI ACTAGT 2 cut(s) 599, 953
BfaI CTAG 9 cut(s) 126, 174, 264, 269, 366, 600, 954, 1446, 1505
BfmI CTRYAG 1 cut(s) 1095
BfrI CTTAAG 2 cut(s) 98, 242
BfuAI ACCTGC 1 cut(s) 508
BglII AGATCT 1 cut(s) 1250
BisI GCNGC 6 cut(s) 33, 312, 468, 1320, 1587, 1590
BlsI GCNGC 6 cut(s) 34, 313, 469, 1321, 1588, 1591
Bme1390I CCNGG 1 cut(s) 564
Bme18I GGWCC 1 cut(s) 177
BmgT120I GGNCC 3 cut(s) 177, 299, 1135
BmiI GGNNCC 6 cut(s) 228, 300, 528, 576, 904, 976
BmrFI CCNGG 1 cut(s) 564
BmrI ACTGGG 1 cut(s) 1000
BmsI GCATC 2 cut(s) 1113, 1453
BmuI ACTGGG 1 cut(s) 1000
BpmI CTGGAG 1 cut(s) 39
Bpu14I TTCGAA 1 cut(s) 895
BpuEI CTTGAG 1 cut(s) 1593
BsaI GGTCTC 1 cut(s) 1442
BsaJI CCNNGG 4 cut(s) 816, 1158, 1478, 1752
BsaWI WCCGGW 1 cut(s) 1180
BsaXI ACNNNNNCTCC 2 cut(s) 1266, 1296
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse1I ACTGG 3 cut(s) 496, 544, 1006
Bse3DI GCAATG 1 cut(s) 459
BseAI TCCGGA 1 cut(s) 1180
BseBI CCWGG 1 cut(s) 564
BseDI CCNNGG 4 cut(s) 816, 1158, 1478, 1752
BseGI GGATG 8 cut(s) 30, 52, 138, 154, 967, 1285, 1468, 1623
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 3 cut(s) 384, 1131, 1584
BseNI ACTGG 3 cut(s) 496, 544, 1006
BseRI GAGGAG 1 cut(s) 796
BseXI GCAGC 5 cut(s) 19, 323, 1306, 1576, 1598
BseYI CCCAGC 1 cut(s) 625
BshFI GGCC 4 cut(s) 301, 467, 1137, 1224
BshNI GGYRCC 2 cut(s) 902, 974
BsiHKAI GWGCWC 2 cut(s) 263, 1504
BsiSI CCGG 1 cut(s) 1181
BslI CCNNNNNNNGG 1 cut(s) 295
BsmAI GTCTC 3 cut(s) 57, 254, 1442
BsmI GAATGC 3 cut(s) 34, 189, 1321
BsnI GGCC 4 cut(s) 301, 467, 1137, 1224
Bso31I GGTCTC 1 cut(s) 1442
Bsp119I TTCGAA 1 cut(s) 895
Bsp1286I GDGCHC 3 cut(s) 263, 714, 1504
Bsp13I TCCGGA 1 cut(s) 1180
Bsp1407I TGTACA 1 cut(s) 1216
Bsp19I CCATGG 1 cut(s) 1478
BspACI CCGC 6 cut(s) 22, 35, 344, 468, 699, 1277
BspANI GGCC 4 cut(s) 301, 467, 1137, 1224
BspCNI CTCAG 3 cut(s) 385, 1130, 1585
BspEI TCCGGA 1 cut(s) 1180
BspHI TCATGA 2 cut(s) 133, 1257
BspLI GGNNCC 6 cut(s) 228, 300, 528, 576, 904, 976
BspMI ACCTGC 1 cut(s) 508
BspPI GGATC 8 cut(s) 439, 521, 534, 1149, 1359, 1399, 1420, 1519
BspQI GCTCTTC 1 cut(s) 3
BspT104I TTCGAA 1 cut(s) 895
BspT107I GGYRCC 2 cut(s) 902, 974
BspTI CTTAAG 2 cut(s) 98, 242
BspTNI GGTCTC 1 cut(s) 1442
BsrBI CCGCTC 2 cut(s) 699, 1277
BsrDI GCAATG 1 cut(s) 459
BsrGI TGTACA 1 cut(s) 1216
BsrI ACTGG 3 cut(s) 496, 544, 1006
BssECI CCNNGG 4 cut(s) 816, 1158, 1478, 1752
BssT1I CCWWGG 3 cut(s) 1158, 1478, 1752
Bst2UI CCWGG 1 cut(s) 564
Bst6I CTCTTC 3 cut(s) 3, 625, 1333
BstAFI CTTAAG 2 cut(s) 98, 242
BstAPI GCANNNNNTGC 1 cut(s) 555
BstAUI TGTACA 1 cut(s) 1216
BstBI TTCGAA 1 cut(s) 895
BstC8I GCNNGC 2 cut(s) 259, 560
BstDEI CTNAG 3 cut(s) 393, 1117, 1593
BstDSI CCRYGG 1 cut(s) 1478
BstF5I GGATG 8 cut(s) 30, 52, 138, 154, 967, 1285, 1468, 1623
BstHHI GCGC 1 cut(s) 1689
BstMAI GTCTC 3 cut(s) 57, 254, 1442
BstMWI GCNNNNNNNGC 4 cut(s) 19, 83, 350, 555
BstNI CCWGG 1 cut(s) 564
BstNSI RCATGY 2 cut(s) 854, 892
BstSCI CCNGG 1 cut(s) 562
BstSFI CTRYAG 1 cut(s) 1095
BstV1I GCAGC 5 cut(s) 19, 323, 1306, 1576, 1598
BstX2I RGATCY 7 cut(s) 431, 526, 1250, 1351, 1391, 1412, 1511
BstXI CCANNNNNNTGG 1 cut(s) 68
BstYI RGATCY 7 cut(s) 431, 526, 1250, 1351, 1391, 1412, 1511
BsuRI GGCC 4 cut(s) 301, 467, 1137, 1224
BtgI CCRYGG 1 cut(s) 1478
BtsCI GGATG 8 cut(s) 30, 52, 138, 154, 967, 1285, 1468, 1623
BtsI GCAGTG 1 cut(s) 1498
BtsIMutI CAGTG 1 cut(s) 1498
BveI ACCTGC 1 cut(s) 508
Cac8I GCNNGC 2 cut(s) 259, 560
CaiI CAGNNNCTG 1 cut(s) 1592
CciI TCATGA 2 cut(s) 133, 1257
CfoI GCGC 1 cut(s) 1689
Cfr13I GGNCC 3 cut(s) 177, 299, 1135
CseI GACGC 1 cut(s) 1155
Csp6I GTAC 4 cut(s) 375, 927, 975, 1217
CviQI GTAC 4 cut(s) 375, 927, 975, 1217
DdeI CTNAG 3 cut(s) 393, 1117, 1593
EaeI YGGCCR 1 cut(s) 465
Eam1104I CTCTTC 3 cut(s) 3, 625, 1333
EarI CTCTTC 3 cut(s) 3, 625, 1333
Eco130I CCWWGG 3 cut(s) 1158, 1478, 1752
Eco24I GRGCYC 1 cut(s) 714
Eco31I GGTCTC 1 cut(s) 1442
Eco32I GATATC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 177
Eco57I CTGAAG 3 cut(s) 747, 1536, 1644
EcoRII CCWGG 1 cut(s) 562
EcoRV GATATC 1 cut(s) 131
EcoT14I CCWWGG 3 cut(s) 1158, 1478, 1752
EcoT22I ATGCAT 2 cut(s) 1349, 1468
EcoT38I GRGCYC 1 cut(s) 714
ErhI CCWWGG 3 cut(s) 1158, 1478, 1752
FalI AAGNNNNNCTT 2 cut(s) 1414, 1446
FauI CCCGC 1 cut(s) 337
Fnu4HI GCNGC 6 cut(s) 33, 312, 468, 1320, 1587, 1590
FokI GGATG 8 cut(s) 37, 59, 125, 161, 974, 1292, 1475, 1630
FriOI GRGCYC 1 cut(s) 714
Fsp4HI GCNGC 6 cut(s) 33, 312, 468, 1320, 1587, 1590
FspBI CTAG 9 cut(s) 126, 174, 264, 269, 366, 600, 954, 1446, 1505
GlaI GCGC 1 cut(s) 1688
GluI GCNGC 6 cut(s) 33, 312, 468, 1320, 1587, 1590
GsaI CCCAGC 1 cut(s) 629
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 4 cut(s) 301, 467, 1137, 1224
HapII CCGG 1 cut(s) 1181
HgaI GACGC 1 cut(s) 1155
HhaI GCGC 1 cut(s) 1689
Hin6I GCGC 1 cut(s) 1687
HinP1I GCGC 1 cut(s) 1687
HincII GTYRAC 2 cut(s) 801, 1011
HindII GTYRAC 2 cut(s) 801, 1011
HindIII AAGCTT 1 cut(s) 1525
HpaII CCGG 1 cut(s) 1181
HphI GGTGA 3 cut(s) 422, 979, 1290
Hpy166II GTNNAC 6 cut(s) 497, 801, 927, 951, 1011, 1697
Hpy188I TCNGA 9 cut(s) 7, 636, 727, 876, 1120, 1314, 1356, 1516, 1603
Hpy188III TCNNGA 7 cut(s) 134, 180, 581, 959, 1181, 1258, 1610
Hpy8I GTNNAC 6 cut(s) 497, 801, 927, 951, 1011, 1697
Hpy99I CGWCG 1 cut(s) 1149
HpyAV CCTTC 5 cut(s) 388, 540, 792, 1063, 1511
HpyF10VI GCNNNNNNNGC 4 cut(s) 19, 83, 350, 555
HpyF3I CTNAG 3 cut(s) 393, 1117, 1593
HspAI GCGC 1 cut(s) 1687
Kpn2I TCCGGA 1 cut(s) 1180
KpnI GGTACC 1 cut(s) 978
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 4 cut(s) 226, 662, 1084, 1274
Lsp1109I GCAGC 5 cut(s) 19, 323, 1306, 1576, 1598
LweI GCATC 2 cut(s) 1113, 1453
MaeI CTAG 9 cut(s) 126, 174, 264, 269, 366, 600, 954, 1446, 1505
MaeIII GTNAC 3 cut(s) 388, 1090, 1672
MbiI CCGCTC 2 cut(s) 699, 1277
MboII GAAGA 7 cut(s) 20, 612, 695, 1121, 1320, 1422, 1637
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 7 cut(s) 431, 526, 1250, 1351, 1391, 1412, 1511
MhlI GDGCHC 3 cut(s) 263, 714, 1504
MluCI AATT 8 cut(s) 110, 483, 505, 668, 690, 1130, 1243, 1455
MlyI GAGTC 7 cut(s) 59, 256, 640, 860, 886, 1026, 1135
MmeI TCCRAC 2 cut(s) 614, 1390
Mph1103I ATGCAT 2 cut(s) 1349, 1468
MroI TCCGGA 1 cut(s) 1180
MseI TTAA 8 cut(s) 17, 99, 243, 839, 1034, 1241, 1341, 1458
MslI CAYNNNNRTG 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 1589
MspCI CTTAAG 2 cut(s) 98, 242
MspI CCGG 1 cut(s) 1181
MspR9I CCNGG 1 cut(s) 564
MunI CAATTG 1 cut(s) 483
Mva1269I GAATGC 3 cut(s) 34, 189, 1321
MvaI CCWGG 1 cut(s) 564
MwoI GCNNNNNNNGC 4 cut(s) 19, 83, 350, 555
NcoI CCATGG 1 cut(s) 1478
NlaIV GGNNCC 6 cut(s) 228, 300, 528, 576, 904, 976
NmeAIII GCCGAG 1 cut(s) 841
NmuCI GTSAC 1 cut(s) 1090
NsiI ATGCAT 2 cut(s) 1349, 1468
NspI RCATGY 2 cut(s) 854, 892
NspV TTCGAA 1 cut(s) 895
PagI TCATGA 2 cut(s) 133, 1257
PciI ACATGT 1 cut(s) 850
PciSI GCTCTTC 1 cut(s) 3
PcsI WCGNNNNNNNCGW 1 cut(s) 1150
PctI GAATGC 3 cut(s) 34, 189, 1321
PfeI GAWTC 6 cut(s) 121, 476, 637, 1184, 1604, 1757
PflMI CCANNNNNTGG 1 cut(s) 295
PkrI GCNGC 6 cut(s) 34, 313, 469, 1321, 1588, 1591
PleI GAGTC 7 cut(s) 58, 255, 639, 860, 885, 1025, 1135
PpsI GAGTC 7 cut(s) 58, 255, 639, 860, 885, 1025, 1135
PscI ACATGT 1 cut(s) 850
Psp6I CCWGG 1 cut(s) 562
PspFI CCCAGC 1 cut(s) 625
PspGI CCWGG 1 cut(s) 562
PspN4I GGNNCC 6 cut(s) 228, 300, 528, 576, 904, 976
PspPI GGNCC 3 cut(s) 177, 299, 1135
PstNI CAGNNNCTG 1 cut(s) 1592
PsuI RGATCY 7 cut(s) 431, 526, 1250, 1351, 1391, 1412, 1511
PvuII CAGCTG 1 cut(s) 1589
RsaI GTAC 4 cut(s) 376, 928, 976, 1218
RsaNI GTAC 4 cut(s) 375, 927, 975, 1217
RseI CAYNNNNRTG 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 3
SaqAI TTAA 8 cut(s) 17, 99, 243, 839, 1034, 1241, 1341, 1458
SatI GCNGC 6 cut(s) 33, 312, 468, 1320, 1587, 1590
Sau96I GGNCC 3 cut(s) 177, 299, 1135
SchI GAGTC 7 cut(s) 59, 256, 640, 860, 886, 1026, 1135
ScrFI CCNGG 1 cut(s) 564
SduI GDGCHC 3 cut(s) 263, 714, 1504
SfaNI GCATC 2 cut(s) 1113, 1453
SfcI CTRYAG 1 cut(s) 1095
SfuI TTCGAA 1 cut(s) 895
SinI GGWCC 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 3 cut(s) 98, 242, 1608
SmoI CTYRAG 3 cut(s) 98, 242, 1608
SpeI ACTAGT 2 cut(s) 599, 953
Sse9I AATT 8 cut(s) 110, 483, 505, 668, 690, 1130, 1243, 1455
SsiI CCGC 6 cut(s) 22, 35, 344, 468, 699, 1277
SspMI CTAG 9 cut(s) 126, 174, 264, 269, 366, 600, 954, 1446, 1505
StyD4I CCNGG 1 cut(s) 562
StyI CCWWGG 3 cut(s) 1158, 1478, 1752
TaqI TCGA 4 cut(s) 81, 672, 895, 1144
TasI AATT 8 cut(s) 110, 483, 505, 668, 690, 1130, 1243, 1455
TatI WGTACW 2 cut(s) 926, 1216
TauI GCSGC 1 cut(s) 470
TfiI GAWTC 6 cut(s) 121, 476, 637, 1184, 1604, 1757
Tru1I TTAA 8 cut(s) 17, 99, 243, 839, 1034, 1241, 1341, 1458
Tru9I TTAA 8 cut(s) 17, 99, 243, 839, 1034, 1241, 1341, 1458
TscAI CASTG 1 cut(s) 1498
TseFI GTSAC 1 cut(s) 1090
TseI GCWGC 5 cut(s) 32, 311, 1319, 1586, 1589
Tsp45I GTSAC 1 cut(s) 1090
TspGWI ACGGA 2 cut(s) 131, 371
TspRI CASTG 1 cut(s) 1498
Van91I CCANNNNNTGG 1 cut(s) 295
Vha464I CTTAAG 2 cut(s) 98, 242
VpaK11BI GGWCC 1 cut(s) 177
XapI RAATTY 1 cut(s) 668
XceI RCATGY 2 cut(s) 854, 892
XspI CTAG 9 cut(s) 126, 174, 264, 269, 366, 600, 954, 1446, 1505
Zsp2I ATGCAT 2 cut(s) 1349, 1468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.