Rh3CG238100

Protein downstream neighbor of

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
22796081 .. 22802997
6917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG238100.1

Sequence Viewer

Length: 1266 bp
ATGGCCAAGGTTGCTCGACCTGGTTCTCTACCTCCCGCTGCTCTCAAGGTTGGTGGCGGAGCGATGAAGGCCGGCCCAGTCAAAAGAAAGACGCCTTCAGAACTGAGAGAAGAGCAGTTGAAGCGGATGAATGCTGTGGAGATTATGGATGAGTCTCCAGCCCGTTTGCTTGGTTCTGCAAACGAGGCAGACAATGGGCTTAAGAAACCAGAATTGTCAAGGATTCCTAGATACCATGACATCCGTATGGATGAAGTATATCCTGCAAAGAAATCTAGGTCCAGAATGCTATTTGGAAAGGAAAATGTCAAGGAAAGTATTTCAATGGAGCCACCTATCAGCCTTAAGAATCTCTCTGCGTGCTCCAGTGTGGCTTCCAAGAGAAAGCACCAACAAATGGGGCCAGAGATTGCAGCCGAAAGCACAGAAAAAGGTGTAGCTAAAGCTAATCAAGCAAATGAAAACTTTAGTCAGAGTACTTTCCGTAGTGTTACTGAGATTTCATCGGCTGGTGATAGGTCATCTGGCTTTGGATCTGTTGATGTGGGTAAAGCAATGAAAGGAATGGCCGCCCTTGAATCCTCAATCGCTACTGGTTCACCTGCTAATTCTTCTGAAAGATGTGCGGATCCTTCATCAACTGGTTTTGGCAACTTTTGCGTGCCTGGTGGCAAGGCTCCTCTGGATTTTACTTTGAAAACTAGCATGCGAGTGGTTTCCTCTTCCCCAGCGAGTCGGATTCATAAGTCAATCACACGCTCCACATTCAAATTCGATAGTTGTGAAGATCAAATTATGAGTGGTAGCTCAGGGCTCACATCAACTTCTGAAGTCAGTTCTAAACTTTTACATTCATGGGTTTATCCTCAATCTACCCTGCCACCTTCTCTTATACAAGTGTTGACCTCTTCAACAGCCGAGGGAGTTGAAATGGATTTTTTAACAAAACGACATGTAGCATGGGAGGACTCATTTCGGAGTCTATACTACATGCTTCGAAATGGCGCCTGTAATATATTTTATGTGTGTACTCCATATTTTGTGGTAATGTTTACTAGTCGGGATGTTGCTGTGGGTACCAAACGCCTCACCAATGCTTGTATCTCCCAGTCAACAAGAGTCTTGCAATCATTGTTAAGAGAGAATGATGTTGCCTTCTCTATGCCCCTTTGCCGTTCTAAAGTGGAGCAAGTCACTACAGAAGTCCTTGATGAACTCTCAGAGATGCAAGAATTGGGCCAGGTTAGTAACTTTTTTACCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

421

Amino Acids

45.77

Weight (kDa)

8.99

Isoelectric Point (pI)

61.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 610
Acc36I ACCTGC 1 cut(s) 610
Acc65I GGTACC 1 cut(s) 1076
AccB1I GGYRCC 2 cut(s) 1004, 1076
AccB7I CCANNNNNTGG 1 cut(s) 397
AciI CCGC 5 cut(s) 36, 57, 124, 570, 626
AclWI GGATC 3 cut(s) 541, 623, 636
AcoI YGGCCR 2 cut(s) 3, 567
AcsI RAATTY 1 cut(s) 770
AcuI CTGAAG 2 cut(s) 81, 849
AcyI GRCGYC 2 cut(s) 92, 1005
AfaI GTAC 3 cut(s) 478, 1030, 1078
AfiI CCNNNNNNNGG 1 cut(s) 397
AflII CTTAAG 2 cut(s) 200, 344
AflIII ACRYGT 1 cut(s) 952
AgsI TTSAA 7 cut(s) 121, 324, 578, 697, 769, 912, 929
AhlI ACTAGT 1 cut(s) 1055
AjnI CCWGG 3 cut(s) 19, 664, 1239
AluBI AGCT 3 cut(s) 440, 446, 807
AluI AGCT 3 cut(s) 440, 446, 807
Alw21I GWGCWC 1 cut(s) 365
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 3 cut(s) 541, 623, 636
AoxI GGCC 6 cut(s) 3, 69, 73, 401, 567, 1237
ApeKI GCWGC 2 cut(s) 38, 413
ApoI RAATTY 1 cut(s) 770
Asp718I GGTACC 1 cut(s) 1076
AspLEI GCGC 1 cut(s) 1007
AspS9I GGNCC 4 cut(s) 74, 279, 401, 1237
AsuHPI GGTGA 3 cut(s) 524, 591, 1081
AsuII TTCGAA 1 cut(s) 997
AvaII GGWCC 1 cut(s) 279
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 628
BanI GGYRCC 2 cut(s) 1004, 1076
BanII GRGCYC 1 cut(s) 816
Bbv12I GWGCWC 1 cut(s) 365
BbvI GCAGC 2 cut(s) 25, 425
BceAI ACGGC 1 cut(s) 1158
BciT130I CCWGG 3 cut(s) 21, 666, 1241
BcoDI GTCTC 1 cut(s) 159
BcuI ACTAGT 1 cut(s) 1055
BfaI CTAG 4 cut(s) 228, 276, 702, 1056
BfmI CTRYAG 1 cut(s) 1197
BfoI RGCGCY 1 cut(s) 1008
BfrI CTTAAG 2 cut(s) 200, 344
BfuAI ACCTGC 1 cut(s) 610
BisI GCNGC 3 cut(s) 39, 414, 570
BlsI GCNGC 3 cut(s) 40, 415, 571
BmcAI AGTACT 1 cut(s) 478
Bme1390I CCNGG 3 cut(s) 21, 666, 1241
Bme18I GGWCC 1 cut(s) 279
BmgT120I GGNCC 4 cut(s) 74, 279, 401, 1237
BmiI GGNNCC 6 cut(s) 330, 402, 630, 678, 1006, 1078
BmrFI CCNGG 3 cut(s) 21, 666, 1241
BmrI ACTGGG 2 cut(s) 71, 1102
BmsI GCATC 1 cut(s) 1215
BmuI ACTGGG 2 cut(s) 71, 1102
BpmI CTGGAG 2 cut(s) 141, 349
Bpu10I CCTNAGC 1 cut(s) 808
Bpu14I TTCGAA 1 cut(s) 997
BpuEI CTTGAG 1 cut(s) 29
BsaHI GRCGYC 2 cut(s) 92, 1005
BsaJI CCNNGG 2 cut(s) 6, 918
Bsc4I CCNNNNNNNGG 1 cut(s) 397
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 5 cut(s) 77, 366, 598, 646, 1108
Bse3DI GCAATG 1 cut(s) 561
BseBI CCWGG 3 cut(s) 21, 666, 1241
BseDI CCNNGG 2 cut(s) 6, 918
BseGI GGATG 5 cut(s) 132, 154, 240, 256, 1069
BseLI CCNNNNNNNGG 1 cut(s) 397
BseMI GCAATG 1 cut(s) 561
BseMII CTCAG 4 cut(s) 95, 486, 822, 1233
BseNI ACTGG 5 cut(s) 77, 366, 598, 646, 1108
BseRI GAGGAG 1 cut(s) 669
BseXI GCAGC 2 cut(s) 25, 425
BseYI CCCAGC 1 cut(s) 727
BshFI GGCC 6 cut(s) 5, 71, 75, 403, 569, 1239
BshNI GGYRCC 2 cut(s) 1004, 1076
BsiHKAI GWGCWC 1 cut(s) 365
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 397
BsmAI GTCTC 1 cut(s) 159
BsmI GAATGC 2 cut(s) 136, 291
BsnI GGCC 6 cut(s) 5, 71, 75, 403, 569, 1239
Bsp119I TTCGAA 1 cut(s) 997
Bsp1286I GDGCHC 2 cut(s) 365, 816
Bsp143I GATC 3 cut(s) 533, 628, 787
BspACI CCGC 5 cut(s) 36, 57, 124, 570, 626
BspANI GGCC 6 cut(s) 5, 71, 75, 403, 569, 1239
BspCNI CTCAG 4 cut(s) 96, 487, 821, 1232
BspLI GGNNCC 6 cut(s) 330, 402, 630, 678, 1006, 1078
BspMI ACCTGC 1 cut(s) 610
BspPI GGATC 3 cut(s) 541, 623, 636
BspQI GCTCTTC 1 cut(s) 105
BspT104I TTCGAA 1 cut(s) 997
BspT107I GGYRCC 2 cut(s) 1004, 1076
BspTI CTTAAG 2 cut(s) 200, 344
BsrDI GCAATG 1 cut(s) 561
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 5 cut(s) 77, 366, 598, 646, 1108
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 6, 918
BssMI GATC 3 cut(s) 533, 628, 787
BssNI GRCGYC 2 cut(s) 92, 1005
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 3 cut(s) 21, 666, 1241
Bst6I CTCTTC 3 cut(s) 105, 727, 913
BstACI GRCGYC 2 cut(s) 92, 1005
BstAFI CTTAAG 2 cut(s) 200, 344
BstAPI GCANNNNNTGC 1 cut(s) 657
BstBI TTCGAA 1 cut(s) 997
BstC8I GCNNGC 4 cut(s) 73, 361, 662, 707
BstDEI CTNAG 4 cut(s) 104, 495, 808, 1219
BstF5I GGATG 5 cut(s) 132, 154, 240, 256, 1069
BstH2I RGCGCY 1 cut(s) 1008
BstHHI GCGC 1 cut(s) 1007
BstKTI GATC 3 cut(s) 536, 631, 790
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 3 cut(s) 533, 628, 787
BstMWI GCNNNNNNNGC 6 cut(s) 11, 68, 121, 185, 452, 657
BstNI CCWGG 3 cut(s) 21, 666, 1241
BstNSI RCATGY 3 cut(s) 709, 956, 994
BstSCI CCNGG 3 cut(s) 19, 664, 1239
BstSFI CTRYAG 1 cut(s) 1197
BstV1I GCAGC 2 cut(s) 25, 425
BstX2I RGATCY 2 cut(s) 533, 628
BstYI RGATCY 2 cut(s) 533, 628
BsuRI GGCC 6 cut(s) 5, 71, 75, 403, 569, 1239
BtgZI GCGATG 1 cut(s) 77
BtsCI GGATG 5 cut(s) 132, 154, 240, 256, 1069
BtsIMutI CAGTG 1 cut(s) 373
BveI ACCTGC 1 cut(s) 610
Cac8I GCNNGC 4 cut(s) 73, 361, 662, 707
CfoI GCGC 1 cut(s) 1007
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 4 cut(s) 74, 279, 401, 1237
CseI GACGC 1 cut(s) 100
CsiI ACCWGGT 1 cut(s) 19
Csp6I GTAC 3 cut(s) 477, 1029, 1077
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviAII CATG 6 cut(s) 236, 706, 855, 953, 960, 991
CviQI GTAC 3 cut(s) 477, 1029, 1077
DdeI CTNAG 4 cut(s) 104, 495, 808, 1219
DinI GGCGCC 1 cut(s) 1006
DpnI GATC 3 cut(s) 535, 630, 789
DpnII GATC 3 cut(s) 533, 628, 787
EaeI YGGCCR 2 cut(s) 3, 567
Eam1104I CTCTTC 3 cut(s) 105, 727, 913
EarI CTCTTC 3 cut(s) 105, 727, 913
EciI GGCGGA 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 816
Eco47I GGWCC 1 cut(s) 279
Eco57I CTGAAG 2 cut(s) 81, 849
EcoRII CCWGG 3 cut(s) 19, 664, 1239
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 816
EgeI GGCGCC 1 cut(s) 1006
EheI GGCGCC 1 cut(s) 1006
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 6 cut(s) 239, 709, 858, 956, 963, 994
FatI CATG 6 cut(s) 235, 705, 854, 952, 959, 990
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 3 cut(s) 39, 414, 570
FokI GGATG 5 cut(s) 139, 161, 227, 263, 1076
FriOI GRGCYC 1 cut(s) 816
FseI GGCCGGCC 1 cut(s) 75
Fsp4HI GCNGC 3 cut(s) 39, 414, 570
FspBI CTAG 4 cut(s) 228, 276, 702, 1056
GlaI GCGC 1 cut(s) 1006
GluI GCNGC 3 cut(s) 39, 414, 570
GsaI CCCAGC 1 cut(s) 731
GsuI CTGGAG 2 cut(s) 141, 349
HaeII RGCGCY 1 cut(s) 1008
HaeIII GGCC 6 cut(s) 5, 71, 75, 403, 569, 1239
HapII CCGG 1 cut(s) 72
HgaI GACGC 1 cut(s) 100
HhaI GCGC 1 cut(s) 1007
Hin1I GRCGYC 2 cut(s) 92, 1005
Hin1II CATG 6 cut(s) 239, 709, 858, 956, 963, 994
Hin6I GCGC 1 cut(s) 1005
HinP1I GCGC 1 cut(s) 1005
HincII GTYRAC 2 cut(s) 903, 1113
HindII GTYRAC 2 cut(s) 903, 1113
HinfI GANTC 9 cut(s) 152, 223, 349, 578, 733, 739, 968, 979, 1119
HpaII CCGG 1 cut(s) 72
HphI GGTGA 3 cut(s) 524, 591, 1081
Hpy166II GTNNAC 5 cut(s) 599, 903, 1029, 1053, 1113
Hpy188I TCNGA 7 cut(s) 100, 474, 616, 738, 829, 978, 1222
Hpy188III TCNNGA 3 cut(s) 282, 683, 1061
Hpy8I GTNNAC 5 cut(s) 599, 903, 1029, 1053, 1113
HpyAV CCTTC 5 cut(s) 61, 105, 642, 894, 1165
HpyCH4V TGCA 5 cut(s) 179, 266, 413, 1126, 1228
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 68, 121, 185, 452, 657
HpyF3I CTNAG 4 cut(s) 104, 495, 808, 1219
Hsp92I GRCGYC 2 cut(s) 92, 1005
Hsp92II CATG 6 cut(s) 239, 709, 858, 956, 963, 994
HspAI GCGC 1 cut(s) 1005
KasI GGCGCC 1 cut(s) 1004
KpnI GGTACC 1 cut(s) 1080
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Kzo9I GATC 3 cut(s) 533, 628, 787
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 6 cut(s) 59, 328, 368, 682, 764, 1186
Lsp1109I GCAGC 2 cut(s) 25, 425
LweI GCATC 1 cut(s) 1215
MabI ACCWGGT 1 cut(s) 19
MaeI CTAG 4 cut(s) 228, 276, 702, 1056
MaeIII GTNAC 3 cut(s) 490, 1192, 1247
MalI GATC 3 cut(s) 535, 630, 789
MboI GATC 3 cut(s) 533, 628, 787
MboII GAAGA 5 cut(s) 122, 603, 714, 797, 900
MflI RGATCY 2 cut(s) 533, 628
MhlI GDGCHC 2 cut(s) 365, 816
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 212, 607, 770, 792, 1232
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 1005
MlyI GAGTC 5 cut(s) 161, 742, 962, 988, 1128
MmeI TCCRAC 1 cut(s) 716
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 71
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 201, 345, 941, 1136, 1264
MslI CAYNNNNRTG 2 cut(s) 245, 710
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 38
MspCI CTTAAG 2 cut(s) 200, 344
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 3 cut(s) 21, 666, 1241
Mva1269I GAATGC 2 cut(s) 136, 291
MvaI CCWGG 3 cut(s) 21, 666, 1241
MwoI GCNNNNNNNGC 6 cut(s) 11, 68, 121, 185, 452, 657
NaeI GCCGGC 1 cut(s) 73
NarI GGCGCC 1 cut(s) 1005
NdeII GATC 3 cut(s) 533, 628, 787
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 6 cut(s) 239, 709, 858, 956, 963, 994
NlaIV GGNNCC 6 cut(s) 330, 402, 630, 678, 1006, 1078
NmeAIII GCCGAG 1 cut(s) 943
NmuCI GTSAC 1 cut(s) 1192
NspI RCATGY 3 cut(s) 709, 956, 994
NspV TTCGAA 1 cut(s) 997
PaeI GCATGC 1 cut(s) 709
PaqCI CACCTGC 1 cut(s) 610
PciI ACATGT 1 cut(s) 952
PciSI GCTCTTC 1 cut(s) 105
PctI GAATGC 2 cut(s) 136, 291
PdiI GCCGGC 1 cut(s) 73
PfeI GAWTC 4 cut(s) 223, 349, 578, 739
PflMI CCANNNNNTGG 1 cut(s) 397
PkrI GCNGC 3 cut(s) 40, 415, 571
PleI GAGTC 5 cut(s) 160, 741, 962, 987, 1127
PluTI GGCGCC 1 cut(s) 1008
PpsI GAGTC 5 cut(s) 160, 741, 962, 987, 1127
PscI ACATGT 1 cut(s) 952
Psp6I CCWGG 3 cut(s) 19, 664, 1239
PspFI CCCAGC 1 cut(s) 727
PspGI CCWGG 3 cut(s) 19, 664, 1239
PspN4I GGNNCC 6 cut(s) 330, 402, 630, 678, 1006, 1078
PspPI GGNCC 4 cut(s) 74, 279, 401, 1237
PsuI RGATCY 2 cut(s) 533, 628
RigI GGCCGGCC 1 cut(s) 75
RsaI GTAC 3 cut(s) 478, 1030, 1078
RsaNI GTAC 3 cut(s) 477, 1029, 1077
RseI CAYNNNNRTG 2 cut(s) 245, 710
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 5 cut(s) 201, 345, 941, 1136, 1264
SatI GCNGC 3 cut(s) 39, 414, 570
Sau3AI GATC 3 cut(s) 533, 628, 787
Sau96I GGNCC 4 cut(s) 74, 279, 401, 1237
ScaI AGTACT 1 cut(s) 478
SchI GAGTC 5 cut(s) 161, 742, 962, 988, 1128
ScrFI CCNGG 3 cut(s) 21, 666, 1241
SduI GDGCHC 2 cut(s) 365, 816
SexAI ACCWGGT 1 cut(s) 19
SfaNI GCATC 1 cut(s) 1215
SfcI CTRYAG 1 cut(s) 1197
SfoI GGCGCC 1 cut(s) 1006
SfuI TTCGAA 1 cut(s) 997
SinI GGWCC 1 cut(s) 279
SmiMI CAYNNNNRTG 2 cut(s) 245, 710
SmlI CTYRAG 3 cut(s) 44, 200, 344
SmoI CTYRAG 3 cut(s) 44, 200, 344
SpeI ACTAGT 1 cut(s) 1055
SphI GCATGC 1 cut(s) 709
Sse9I AATT 5 cut(s) 212, 607, 770, 792, 1232
SsiI CCGC 5 cut(s) 36, 57, 124, 570, 626
SspDI GGCGCC 1 cut(s) 1004
SspMI CTAG 4 cut(s) 228, 276, 702, 1056
StyD4I CCNGG 3 cut(s) 19, 664, 1239
StyI CCWWGG 1 cut(s) 6
TaqI TCGA 3 cut(s) 16, 774, 997
TasI AATT 5 cut(s) 212, 607, 770, 792, 1232
TatI WGTACW 2 cut(s) 476, 1028
TauI GCSGC 1 cut(s) 572
TfiI GAWTC 4 cut(s) 223, 349, 578, 739
Tru1I TTAA 5 cut(s) 201, 345, 941, 1136, 1264
Tru9I TTAA 5 cut(s) 201, 345, 941, 1136, 1264
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 1 cut(s) 1192
TseI GCWGC 2 cut(s) 38, 413
Tsp45I GTSAC 1 cut(s) 1192
TspGWI ACGGA 2 cut(s) 233, 473
TspRI CASTG 1 cut(s) 373
Van91I CCANNNNNTGG 1 cut(s) 397
Vha464I CTTAAG 2 cut(s) 200, 344
VpaK11BI GGWCC 1 cut(s) 279
XapI RAATTY 1 cut(s) 770
XceI RCATGY 3 cut(s) 709, 956, 994
XspI CTAG 4 cut(s) 228, 276, 702, 1056
ZrmI AGTACT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.