Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005886

Physical Location & Seq

Genomic Coordinates Reverse (-)

27123741 .. 27128470

Gene Structure 4730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00404650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGAAAGGAATGGCCGCCCTTGAATCCTCAATCGCTACTGGTTCACCTGCTAATTCTTCTGAAAGATGTGCGGATCCTTCATCAACTGGTTTTGGCAACTTTTGCTTGCCTGGTGGCAAGGTTCCTCTGGATTTTACTTTGAAAACTAGCATGCGAGTGGTTTCCTCTTCCCCAGCGAGTCGGATTCATAAGTCAATCACACGCTCCACATTCAAATTCGATAGTTTTGAAGATCAAATTATGAGCGGTAGCTCAGGGCTCACATCAACTTCTGAAGTCAGTTCTAAACTTTTACATTCATGGGTTTATCCTCAATCTACCCTGCCACCTTCTCTTATACAAGTGTTGACTTCCTCAACAGCCGAGGGAGTTGAAATGGATTTTTTAACAAAACGACATGTAGCATGGGAGGACTCATTTCGGAGTCTATACTACATGCTTCGAAATGGTGCCTGTAATATATTTTATGTGTGTACTCCATATTTTGTGGTAATGTTTACTAGTCGGGATGTTGCTGTGGGTACCAAACGCCTCACCAATGCTTGTATCTCCCAGTCAACAAGAGTCTTGCAATCATTGTTAAGAGAGAATGATGTTGCCTTCTCTATGCCCCTTTGCCGTTCTAAAGTGGAGCAAGTCACTACAGAAGTCCTTGATGAACTCTCAGAGATGCAAGAATTGGGCCAGACTCGGCGCACACGATCATTGGTTGATTTAGATAATACCCCGGAATCTTTGCTGGTCATTAGTGGGAATAAGAATGTACATGGCCTGTTTGATATTTTATTAAATTATAGATCTTTCATGACTACTTTGATAGGAGTGGATGTTCCTGTATTATATTCACCTGTGCCATTTCAGAATGCTGCCATCTCTTCTCCACAGGTTAAATGCATGGATCTGAAAAGAACAGAACAGGTGGTTGCTTCAAACAAAGGATCTGTTTCACAAGATGTTGGATCTATGCAAAGCATATCTTCTGGTCTCTGCTCTAGTGTTGAAATTAAGGATGCATTTATTCCACCATGGATTATATGCAGTGTATGTGCTGTAGTGGGATCTGAAGGGGGAAGCTTTGAGGCGAGTTTCACAAATGAACCTACCTCAATCAGTTTGAATGGTTCAATAGAAGCAGCTGCTGAGAAATCTGATTCTCAAGATGGGATAGCTGAAGATTTGCAAAGTAGCAGTTCTGCTTTTGGTATTTTAAAAGCCTTTGTAACACCAAACTTGCGCTTGGGTTTACTAAAGAGCTTGAAGTTTTCAAATGGTTCTTATATGGCTTCTGTTTCTCCTACCTTGGATTCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

437

Amino Acids

47.18

Weight (kDa)

5.57

Isoelectric Point (pI)

62.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54750 AT3G54750 AT3G54750 AT3G54750 AT3G54750
fragaria_vesca	FvH4_6g21040 FvH4_6g21040 FvH4_6g21040
malus_domestica	MD12G1046200.v1.1 MD14G1044900.v1.1
prunus_persica	Prupe.7G089700_v2.0.a1 Prupe.7G089700_v2.0.a1
pyrus_communis	pycom12g03970 pycom12g03980 pycom14g03800 pycom14g03810
rosa_chinensis	RchiOBHm_Chr3g0477411
rosa_laevigata	RLG00000023723
rosa_multiflora	Rmu_ssc0000341.1_g000018
rosa_roxburghii	Rroxscaffold_6G00404170 Rroxscaffold_6G00404650
rosa_rugosa	Rorug03G0160600 Rorug03G0160700
rosa_samantha	Rh3AG210900 Rh3BG244300 Rh3CG238100 Rh3DG237800
rosa_wichuraiana	Rw3G019110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	55
Acc36I	ACCTGC	1 cut(s)	55
Acc65I	GGTACC	1 cut(s)	521
AccB1I	GGYRCC	2 cut(s)	449, 521
AccBSI	CCGCTC	1 cut(s)	246
AciI	CCGC	3 cut(s)	15, 71, 246
AclWI	GGATC	6 cut(s)	68, 81, 906, 946, 967, 1066
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	215
AcuI	CTGAAG	3 cut(s)	294, 1083, 1191
AfaI	GTAC	3 cut(s)	475, 523, 765
AflIII	ACRYGT	1 cut(s)	397
AhlI	ACTAGT	1 cut(s)	500
AjnI	CCWGG	1 cut(s)	109
AloI	GAACNNNNNNTCC	2 cut(s)	813, 845
AluBI	AGCT	5 cut(s)	252, 1074, 1136, 1169, 1254
AluI	AGCT	5 cut(s)	252, 1074, 1136, 1169, 1254
Alw26I	GTCTC	1 cut(s)	989
AlwI	GGATC	6 cut(s)	68, 81, 906, 946, 967, 1066
AlwNI	CAGNNNCTG	1 cut(s)	1139
AoxI	GGCC	3 cut(s)	12, 682, 769
ApeKI	GCWGC	3 cut(s)	866, 1133, 1136
ApoI	RAATTY	1 cut(s)	215
Asp718I	GGTACC	1 cut(s)	521
AspLEI	GCGC	2 cut(s)	696, 1236
AspS9I	GGNCC	1 cut(s)	682
AsuC2I	CCSGG	1 cut(s)	728
AsuHPI	GGTGA	3 cut(s)	36, 526, 837
AsuII	TTCGAA	1 cut(s)	442
BamHI	GGATCC	1 cut(s)	73
BanI	GGYRCC	2 cut(s)	449, 521
BanII	GRGCYC	1 cut(s)	261
BbvI	GCAGC	3 cut(s)	853, 1123, 1145
BccI	CCATC	2 cut(s)	878, 1154
BceAI	ACGGC	1 cut(s)	603
BciT130I	CCWGG	1 cut(s)	111
BcnI	CCSGG	1 cut(s)	728
BcoDI	GTCTC	1 cut(s)	989
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	3 cut(s)	147, 501, 993
BfmI	CTRYAG	2 cut(s)	642, 1050
BfuAI	ACCTGC	1 cut(s)	55
BglII	AGATCT	1 cut(s)	797
BisI	GCNGC	4 cut(s)	15, 867, 1134, 1137
BlsI	GCNGC	4 cut(s)	16, 868, 1135, 1138
Bme1390I	CCNGG	2 cut(s)	111, 728
BmgT120I	GGNCC	1 cut(s)	682
BmiI	GGNNCC	4 cut(s)	75, 123, 451, 523
BmrFI	CCNGG	2 cut(s)	111, 728
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	2 cut(s)	660, 1000
BmuI	ACTGGG	1 cut(s)	547
Bpu10I	CCTNAGC	1 cut(s)	253
Bpu14I	TTCGAA	1 cut(s)	442
BpuEI	CTTGAG	1 cut(s)	1140
BpuMI	CCSGG	1 cut(s)	728
BsaI	GGTCTC	1 cut(s)	989
BsaJI	CCNNGG	4 cut(s)	363, 726, 1025, 1299
BsaXI	ACNNNNNCTCC	2 cut(s)	813, 843
Bse1I	ACTGG	3 cut(s)	43, 91, 553
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	4 cut(s)	363, 726, 1025, 1299
BseGI	GGATG	3 cut(s)	514, 832, 1015
BseMII	CTCAG	3 cut(s)	267, 678, 1131
BseNI	ACTGG	3 cut(s)	43, 91, 553
BseXI	GCAGC	3 cut(s)	853, 1123, 1145
BseYI	CCCAGC	1 cut(s)	172
BshFI	GGCC	3 cut(s)	14, 684, 771
BshNI	GGYRCC	2 cut(s)	449, 521
BsiSI	CCGG	1 cut(s)	728
BsmAI	GTCTC	1 cut(s)	989
BsmI	GAATGC	1 cut(s)	868
BsnI	GGCC	3 cut(s)	14, 684, 771
Bso31I	GGTCTC	1 cut(s)	989
Bsp119I	TTCGAA	1 cut(s)	442
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp1407I	TGTACA	1 cut(s)	763
Bsp143I	GATC	8 cut(s)	73, 232, 701, 797, 898, 938, 959, 1058
Bsp19I	CCATGG	1 cut(s)	1025
BspACI	CCGC	3 cut(s)	15, 71, 246
BspANI	GGCC	3 cut(s)	14, 684, 771
BspCNI	CTCAG	3 cut(s)	266, 677, 1132
BspHI	TCATGA	1 cut(s)	804
BspLI	GGNNCC	4 cut(s)	75, 123, 451, 523
BspMI	ACCTGC	1 cut(s)	55
BspPI	GGATC	6 cut(s)	68, 81, 906, 946, 967, 1066
BspT104I	TTCGAA	1 cut(s)	442
BspT107I	GGYRCC	2 cut(s)	449, 521
BspTNI	GGTCTC	1 cut(s)	989
BsrBI	CCGCTC	1 cut(s)	246
BsrGI	TGTACA	1 cut(s)	763
BsrI	ACTGG	3 cut(s)	43, 91, 553
BssECI	CCNNGG	4 cut(s)	363, 726, 1025, 1299
BssMI	GATC	8 cut(s)	73, 232, 701, 797, 898, 938, 959, 1058
BssT1I	CCWWGG	2 cut(s)	1025, 1299
Bst2UI	CCWGG	1 cut(s)	111
Bst6I	CTCTTC	2 cut(s)	172, 880
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	763
BstBI	TTCGAA	1 cut(s)	442
BstC8I	GCNNGC	2 cut(s)	107, 152
BstDEI	CTNAG	3 cut(s)	253, 664, 1140
BstDSI	CCRYGG	1 cut(s)	1025
BstF5I	GGATG	3 cut(s)	514, 832, 1015
BstHHI	GCGC	2 cut(s)	696, 1236
BstKTI	GATC	8 cut(s)	76, 235, 704, 800, 901, 941, 962, 1061
BstMAI	GTCTC	1 cut(s)	989
BstMBI	GATC	8 cut(s)	73, 232, 701, 797, 898, 938, 959, 1058
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	3 cut(s)	154, 401, 439
BstSCI	CCNGG	2 cut(s)	109, 726
BstSFI	CTRYAG	2 cut(s)	642, 1050
BstV1I	GCAGC	3 cut(s)	853, 1123, 1145
BstX2I	RGATCY	6 cut(s)	73, 797, 898, 938, 959, 1058
BstYI	RGATCY	6 cut(s)	73, 797, 898, 938, 959, 1058
BsuRI	GGCC	3 cut(s)	14, 684, 771
BtgI	CCRYGG	1 cut(s)	1025
BtsCI	GGATG	3 cut(s)	514, 832, 1015
BtsI	GCAGTG	1 cut(s)	1045
BtsIMutI	CAGTG	1 cut(s)	1045
BveI	ACCTGC	1 cut(s)	55
Cac8I	GCNNGC	2 cut(s)	107, 152
CaiI	CAGNNNCTG	1 cut(s)	1139
CciI	TCATGA	1 cut(s)	804
CfoI	GCGC	2 cut(s)	696, 1236
Cfr13I	GGNCC	1 cut(s)	682
Csp6I	GTAC	3 cut(s)	474, 522, 764
CviAII	CATG	9 cut(s)	151, 300, 398, 405, 436, 767, 805, 895, 1026
CviQI	GTAC	3 cut(s)	474, 522, 764
DdeI	CTNAG	3 cut(s)	253, 664, 1140
DpnI	GATC	8 cut(s)	75, 234, 703, 799, 900, 940, 961, 1060
DpnII	GATC	8 cut(s)	73, 232, 701, 797, 898, 938, 959, 1058
DraI	TTTAAA	1 cut(s)	1209
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	2 cut(s)	172, 880
EarI	CTCTTC	2 cut(s)	172, 880
Eco130I	CCWWGG	2 cut(s)	1025, 1299
Eco24I	GRGCYC	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	989
Eco57I	CTGAAG	3 cut(s)	294, 1083, 1191
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	2 cut(s)	1025, 1299
EcoT22I	ATGCAT	2 cut(s)	896, 1015
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	2 cut(s)	1025, 1299
FaeI	CATG	9 cut(s)	154, 303, 401, 408, 439, 770, 808, 898, 1029
FalI	AAGNNNNNCTT	2 cut(s)	961, 993
FatI	CATG	9 cut(s)	150, 299, 397, 404, 435, 766, 804, 894, 1025
Fnu4HI	GCNGC	4 cut(s)	15, 867, 1134, 1137
FokI	GGATG	3 cut(s)	521, 839, 1022
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	4 cut(s)	15, 867, 1134, 1137
FspBI	CTAG	3 cut(s)	147, 501, 993
GlaI	GCGC	2 cut(s)	695, 1235
GluI	GCNGC	4 cut(s)	15, 867, 1134, 1137
GsaI	CCCAGC	1 cut(s)	176
HaeIII	GGCC	3 cut(s)	14, 684, 771
HapII	CCGG	1 cut(s)	728
HhaI	GCGC	2 cut(s)	696, 1236
Hin1II	CATG	9 cut(s)	154, 303, 401, 408, 439, 770, 808, 898, 1029
Hin6I	GCGC	2 cut(s)	694, 1234
HinP1I	GCGC	2 cut(s)	694, 1234
HincII	GTYRAC	2 cut(s)	348, 558
HindII	GTYRAC	2 cut(s)	348, 558
HindIII	AAGCTT	1 cut(s)	1072
HpaII	CCGG	1 cut(s)	728
HphI	GGTGA	3 cut(s)	36, 526, 837
Hpy166II	GTNNAC	6 cut(s)	44, 348, 474, 498, 558, 1244
Hpy188I	TCNGA	9 cut(s)	61, 183, 274, 423, 667, 861, 903, 1063, 1150
Hpy188III	TCNNGA	4 cut(s)	128, 506, 805, 1157
Hpy8I	GTNNAC	6 cut(s)	44, 348, 474, 498, 558, 1244
HpyAV	CCTTC	4 cut(s)	87, 339, 610, 1058
HpyCH4V	TGCA	7 cut(s)	571, 673, 894, 967, 1013, 1038, 1180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	3 cut(s)	253, 664, 1140
Hsp92II	CATG	9 cut(s)	154, 303, 401, 408, 439, 770, 808, 898, 1029
HspAI	GCGC	2 cut(s)	694, 1234
KpnI	GGTACC	1 cut(s)	525
Kzo9I	GATC	8 cut(s)	73, 232, 701, 797, 898, 938, 959, 1058
LmnI	GCTCC	2 cut(s)	209, 631
Lsp1109I	GCAGC	3 cut(s)	853, 1123, 1145
LweI	GCATC	2 cut(s)	660, 1000
MaeI	CTAG	3 cut(s)	147, 501, 993
MaeIII	GTNAC	2 cut(s)	637, 1219
MalI	GATC	8 cut(s)	75, 234, 703, 799, 900, 940, 961, 1060
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	8 cut(s)	73, 232, 701, 797, 898, 938, 959, 1058
MboII	GAAGA	6 cut(s)	48, 159, 242, 867, 969, 1184
MflI	RGATCY	6 cut(s)	73, 797, 898, 938, 959, 1058
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	6 cut(s)	52, 215, 237, 677, 790, 1002
MlyI	GAGTC	5 cut(s)	187, 407, 433, 573, 682
MmeI	TCCRAC	2 cut(s)	161, 937
Mph1103I	ATGCAT	2 cut(s)	896, 1015
MseI	TTAA	6 cut(s)	386, 581, 788, 888, 1005, 1208
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	1136
MspI	CCGG	1 cut(s)	728
MspR9I	CCNGG	2 cut(s)	111, 728
Mva1269I	GAATGC	1 cut(s)	868
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	102
NciI	CCSGG	1 cut(s)	728
NcoI	CCATGG	1 cut(s)	1025
NdeII	GATC	8 cut(s)	73, 232, 701, 797, 898, 938, 959, 1058
NlaIII	CATG	9 cut(s)	154, 303, 401, 408, 439, 770, 808, 898, 1029
NlaIV	GGNNCC	4 cut(s)	75, 123, 451, 523
NmeAIII	GCCGAG	2 cut(s)	388, 670
NmuCI	GTSAC	1 cut(s)	637
NsiI	ATGCAT	2 cut(s)	896, 1015
NspI	RCATGY	3 cut(s)	154, 401, 439
NspV	TTCGAA	1 cut(s)	442
PaeI	GCATGC	1 cut(s)	154
PagI	TCATGA	1 cut(s)	804
PaqCI	CACCTGC	1 cut(s)	55
PciI	ACATGT	1 cut(s)	397
PcsI	WCGNNNNNNNCGW	1 cut(s)	697
PctI	GAATGC	1 cut(s)	868
PfeI	GAWTC	5 cut(s)	23, 184, 731, 1151, 1304
PkrI	GCNGC	4 cut(s)	16, 868, 1135, 1138
PleI	GAGTC	5 cut(s)	186, 407, 432, 572, 682
PpsI	GAGTC	5 cut(s)	186, 407, 432, 572, 682
PscI	ACATGT	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	4 cut(s)	75, 123, 451, 523
PspPI	GGNCC	1 cut(s)	682
PstNI	CAGNNNCTG	1 cut(s)	1139
PsuI	RGATCY	6 cut(s)	73, 797, 898, 938, 959, 1058
PvuII	CAGCTG	1 cut(s)	1136
RsaI	GTAC	3 cut(s)	475, 523, 765
RsaNI	GTAC	3 cut(s)	474, 522, 764
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	6 cut(s)	386, 581, 788, 888, 1005, 1208
SatI	GCNGC	4 cut(s)	15, 867, 1134, 1137
Sau3AI	GATC	8 cut(s)	73, 232, 701, 797, 898, 938, 959, 1058
Sau96I	GGNCC	1 cut(s)	682
SchI	GAGTC	5 cut(s)	187, 407, 433, 573, 682
ScrFI	CCNGG	2 cut(s)	111, 728
SduI	GDGCHC	1 cut(s)	261
SfaNI	GCATC	2 cut(s)	660, 1000
SfcI	CTRYAG	2 cut(s)	642, 1050
SfuI	TTCGAA	1 cut(s)	442
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	1155
SmoI	CTYRAG	1 cut(s)	1155
SpeI	ACTAGT	1 cut(s)	500
SphI	GCATGC	1 cut(s)	154
Sse9I	AATT	6 cut(s)	52, 215, 237, 677, 790, 1002
SsiI	CCGC	3 cut(s)	15, 71, 246
SspMI	CTAG	3 cut(s)	147, 501, 993
StyD4I	CCNGG	2 cut(s)	109, 726
StyI	CCWWGG	2 cut(s)	1025, 1299
TaqI	TCGA	2 cut(s)	219, 442
TasI	AATT	6 cut(s)	52, 215, 237, 677, 790, 1002
TatI	WGTACW	2 cut(s)	473, 763
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	5 cut(s)	23, 184, 731, 1151, 1304
Tru1I	TTAA	6 cut(s)	386, 581, 788, 888, 1005, 1208
Tru9I	TTAA	6 cut(s)	386, 581, 788, 888, 1005, 1208
TscAI	CASTG	1 cut(s)	1045
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	3 cut(s)	866, 1133, 1136
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	7 cut(s)	17, 69, 176, 288, 672, 793, 1110
TspRI	CASTG	1 cut(s)	1045
XapI	RAATTY	1 cut(s)	215
XceI	RCATGY	3 cut(s)	154, 401, 439
XspI	CTAG	3 cut(s)	147, 501, 993
Zsp2I	ATGCAT	2 cut(s)	896, 1015

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.