Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005886

Physical Location & Seq

Genomic Coordinates Forward (+)

3866234 .. 3868718

Gene Structure 2485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03970.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCGATGGTTGCTCCACCCGGTTCTCTGCCTCCCACTTCTCTGAAGATTGGTGGTGGGACTTCAACAGTCAAGAGAAAGACACCATCTCAATTGAGAGGAGAGCAGCGGATGAATGCTGTGGAGATAAGTGATGAATCTCCAGCTCCTTTGCTTGGTTCTACAAATGAAGCGGAAAACGGGCAAAAGAAACAAGAACTGTCAAGGAATCCTAGATACATTGACATTCGTATGGATGAAGTTTACCCTGCAAAAAAATCTAGGTTCAAGATACTCTCTGGAAAAGAGAATGCTAAGGAAAGTAATTCAATGGAGAAACCTAGCACTGTGAAGAATCTTTCCTTGCTTTCTAATTTGGCTTCCAAGAGGAAACACCAACTTTCTGGTCCCCAAACTGTAGATTCTGCTGAACATACTGAAGAAGGCGCGGCAAAAGTTTTTCGAACCATTGAAAAGTGTAGTCAAACTACTTTCCGTAGTGTTACTGAGCTTTCATCAGGCGGTGACAGATTATCGGACTTTGCAGCTGTCGATGTGGATAAAGCTTTAAAAGGAATAGATGCCCAGGAATCTACAATTGGCTCATCTGCTTATATTTCTGAAAGAAGTGGCAATCCTACATCACCTGGTTTCAGCGACTTTTGCTTGCCTGATGGAAAGGTTCCTCTGGATTTTACTTTGAAAAGTAGTATGCGGGTGGTGTCCTCTTCCCCAGTGAATTGGATTCATAGGACAATAGCGTGCGGTGCCTACACTAGTATGCCGAATCTCAAGTTCCAATCCGATCGATTATCAGGATCAAAATATGAGCCGTGGCTCAGGGTTCATATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

278

Amino Acids

30.15

Weight (kDa)

9.25

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54750 AT3G54750 AT3G54750 AT3G54750 AT3G54750
fragaria_vesca	FvH4_6g21040 FvH4_6g21040 FvH4_6g21040
malus_domestica	MD12G1046200.v1.1 MD14G1044900.v1.1
prunus_persica	Prupe.7G089700_v2.0.a1 Prupe.7G089700_v2.0.a1
pyrus_communis	pycom12g03970 pycom12g03980 pycom14g03800 pycom14g03810
rosa_chinensis	RchiOBHm_Chr3g0477411
rosa_laevigata	RLG00000023723
rosa_multiflora	Rmu_ssc0000341.1_g000018
rosa_roxburghii	Rroxscaffold_6G00404170 Rroxscaffold_6G00404650
rosa_rugosa	Rorug03G0160600 Rorug03G0160700
rosa_samantha	Rh3AG210900 Rh3BG244300 Rh3CG238100 Rh3DG237800
rosa_wichuraiana	Rw3G019110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	746
AccII	CGCG	1 cut(s)	428
AciI	CCGC	6 cut(s)	109, 173, 428, 501, 694, 744
AclWI	GGATC	1 cut(s)	805
AcuI	CTGAAG	2 cut(s)	65, 438
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	5 cut(s)	66, 268, 309, 452, 682
AhlI	ACTAGT	1 cut(s)	755
AjnI	CCWGG	2 cut(s)	564, 625
AjuI	GAANNNNNNNTTGG	2 cut(s)	561, 593
AluBI	AGCT	4 cut(s)	146, 490, 527, 545
AluI	AGCT	4 cut(s)	146, 490, 527, 545
AlwI	GGATC	1 cut(s)	805
ApeKI	GCWGC	2 cut(s)	106, 524
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	1 cut(s)	386
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	2 cut(s)	515, 615
AsuII	TTCGAA	1 cut(s)	442
AvaII	GGWCC	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	746
BbvI	GCAGC	2 cut(s)	118, 536
BccI	CCATC	2 cut(s)	94, 647
BceAI	ACGGC	1 cut(s)	796
BciT130I	CCWGG	2 cut(s)	566, 627
BcnI	CCSGG	1 cut(s)	21
BcuI	ACTAGT	1 cut(s)	755
BfaI	CTAG	4 cut(s)	213, 261, 321, 756
BfmI	CTRYAG	1 cut(s)	396
BisI	GCNGC	3 cut(s)	107, 429, 525
BlsI	GCNGC	3 cut(s)	108, 430, 526
Bme1390I	CCNGG	3 cut(s)	21, 566, 627
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	3 cut(s)	388, 663, 748
BmrFI	CCNGG	3 cut(s)	21, 566, 627
BmrI	ACTGGG	1 cut(s)	707
BmsI	GCATC	1 cut(s)	550
BmuI	ACTGGG	1 cut(s)	707
BpmI	CTGGAG	1 cut(s)	126
Bpu10I	CCTNAGC	2 cut(s)	294, 818
Bpu14I	TTCGAA	1 cut(s)	442
BpuEI	CTTGAG	1 cut(s)	755
BpuMI	CCSGG	1 cut(s)	21
Bsa29I	ATCGAT	1 cut(s)	787
BsaJI	CCNNGG	2 cut(s)	564, 812
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	713
BseBI	CCWGG	2 cut(s)	566, 627
BseCI	ATCGAT	1 cut(s)	787
BseDI	CCNNGG	2 cut(s)	564, 812
BseGI	GGATG	2 cut(s)	117, 241
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	2 cut(s)	477, 832
BseNI	ACTGG	1 cut(s)	713
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	2 cut(s)	118, 536
Bsh1236I	CGCG	1 cut(s)	428
Bsh1285I	CGRYCG	1 cut(s)	787
BshNI	GGYRCC	1 cut(s)	746
BshVI	ATCGAT	1 cut(s)	787
BsiEI	CGRYCG	1 cut(s)	787
BsiSI	CCGG	1 cut(s)	21
BslFI	GGGAC	2 cut(s)	73, 372
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmFI	GGGAC	2 cut(s)	73, 372
BsmI	GAATGC	2 cut(s)	121, 295
Bsp119I	TTCGAA	1 cut(s)	442
Bsp143I	GATC	2 cut(s)	784, 797
BspACI	CCGC	6 cut(s)	109, 173, 428, 501, 694, 744
BspCNI	CTCAG	2 cut(s)	478, 831
BspDI	ATCGAT	1 cut(s)	787
BspFNI	CGCG	1 cut(s)	428
BspLI	GGNNCC	3 cut(s)	388, 663, 748
BspPI	GGATC	1 cut(s)	805
BspT104I	TTCGAA	1 cut(s)	442
BspT107I	GGYRCC	1 cut(s)	746
BsrI	ACTGG	1 cut(s)	713
BssECI	CCNNGG	2 cut(s)	564, 812
BssMI	GATC	2 cut(s)	784, 797
Bst2UI	CCWGG	2 cut(s)	566, 627
Bst4CI	ACNGT	4 cut(s)	70, 201, 328, 397
Bst6I	CTCTTC	1 cut(s)	712
BstBI	TTCGAA	1 cut(s)	442
BstC8I	GCNNGC	2 cut(s)	647, 742
BstDEI	CTNAG	3 cut(s)	294, 486, 818
BstDSI	CCRYGG	1 cut(s)	812
BstF5I	GGATG	2 cut(s)	117, 241
BstFNI	CGCG	1 cut(s)	428
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	2 cut(s)	787, 800
BstMBI	GATC	2 cut(s)	784, 797
BstMCI	CGRYCG	1 cut(s)	787
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 642, 746
BstNI	CCWGG	2 cut(s)	566, 627
BstSCI	CCNGG	3 cut(s)	19, 564, 625
BstSFI	CTRYAG	1 cut(s)	396
BstUI	CGCG	1 cut(s)	428
BstV1I	GCAGC	2 cut(s)	118, 536
BstXI	CCANNNNNNTGG	2 cut(s)	383, 720
Bsu15I	ATCGAT	1 cut(s)	787
BsuTUI	ATCGAT	1 cut(s)	787
BtgI	CCRYGG	1 cut(s)	812
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	117, 241
BtsIMutI	CAGTG	2 cut(s)	324, 720
Cac8I	GCNNGC	2 cut(s)	647, 742
CfoI	GCGC	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	386
ClaI	ATCGAT	1 cut(s)	787
CsiI	ACCWGGT	1 cut(s)	625
CviJI	RGCY	8 cut(s)	146, 359, 490, 527, 545, 582, 811, 817
CviKI_1	RGCY	8 cut(s)	146, 359, 490, 527, 545, 582, 811, 817
DdeI	CTNAG	3 cut(s)	294, 486, 818
DpnI	GATC	2 cut(s)	786, 799
DpnII	GATC	2 cut(s)	784, 797
DraI	TTTAAA	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	712
EarI	CTCTTC	1 cut(s)	712
Eco47I	GGWCC	1 cut(s)	386
Eco57I	CTGAAG	2 cut(s)	65, 438
EcoRII	CCWGG	2 cut(s)	564, 625
FaiI	YATR	8 cut(s)	233, 414, 594, 692, 729, 761, 807, 828
FaqI	GGGAC	2 cut(s)	73, 372
FauI	CCCGC	1 cut(s)	687
Fnu4HI	GCNGC	3 cut(s)	107, 429, 525
FokI	GGATG	2 cut(s)	124, 248
Fsp4HI	GCNGC	3 cut(s)	107, 429, 525
FspBI	CTAG	4 cut(s)	213, 261, 321, 756
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	3 cut(s)	107, 429, 525
GsuI	CTGGAG	1 cut(s)	126
HapII	CCGG	1 cut(s)	21
HhaI	GCGC	1 cut(s)	428
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HindIII	AAGCTT	1 cut(s)	543
HinfI	GANTC	7 cut(s)	137, 208, 334, 401, 569, 724, 766
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	2 cut(s)	515, 615
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	4 cut(s)	45, 517, 601, 784
Hpy188III	TCNNGA	5 cut(s)	73, 268, 279, 668, 795
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	1 cut(s)	416
HpyCH4III	ACNGT	4 cut(s)	70, 201, 328, 397
HpyCH4V	TGCA	2 cut(s)	251, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 642, 746
HpyF3I	CTNAG	3 cut(s)	294, 486, 818
HspAI	GCGC	1 cut(s)	426
Kzo9I	GATC	2 cut(s)	784, 797
LmnI	GCTCC	2 cut(s)	19, 151
Lsp1109I	GCAGC	2 cut(s)	118, 536
LweI	GCATC	1 cut(s)	550
MabI	ACCWGGT	1 cut(s)	625
MaeI	CTAG	4 cut(s)	213, 261, 321, 756
MaeIII	GTNAC	2 cut(s)	481, 503
MalI	GATC	2 cut(s)	786, 799
MboI	GATC	2 cut(s)	784, 797
MboII	GAAGA	4 cut(s)	58, 343, 431, 699
MfeI	CAATTG	2 cut(s)	92, 576
MluCI	AATT	5 cut(s)	92, 304, 352, 576, 718
MnlI	CCTC	5 cut(s)	42, 92, 360, 675, 715
MseI	TTAA	1 cut(s)	548
MslI	CAYNNNNRTG	2 cut(s)	230, 758
MspA1I	CMGCKG	2 cut(s)	109, 527
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	3 cut(s)	21, 566, 627
MunI	CAATTG	2 cut(s)	92, 576
Mva1269I	GAATGC	2 cut(s)	121, 295
MvaI	CCWGG	2 cut(s)	566, 627
MvnI	CGCG	1 cut(s)	428
MwoI	GCNNNNNNNGC	3 cut(s)	11, 642, 746
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	2 cut(s)	784, 797
NlaIV	GGNNCC	3 cut(s)	388, 663, 748
NmuCI	GTSAC	1 cut(s)	503
NspV	TTCGAA	1 cut(s)	442
PctI	GAATGC	2 cut(s)	121, 295
PfeI	GAWTC	7 cut(s)	137, 208, 334, 401, 569, 724, 766
PkrI	GCNGC	3 cut(s)	108, 430, 526
Ple19I	CGATCG	1 cut(s)	787
Psp6I	CCWGG	2 cut(s)	564, 625
PspGI	CCWGG	2 cut(s)	564, 625
PspN4I	GGNNCC	3 cut(s)	388, 663, 748
PspPI	GGNCC	1 cut(s)	386
PvuI	CGATCG	1 cut(s)	787
PvuII	CAGCTG	1 cut(s)	527
RseI	CAYNNNNRTG	2 cut(s)	230, 758
SaqAI	TTAA	1 cut(s)	548
SatI	GCNGC	3 cut(s)	107, 429, 525
Sau3AI	GATC	2 cut(s)	784, 797
Sau96I	GGNCC	1 cut(s)	386
ScrFI	CCNGG	3 cut(s)	21, 566, 627
SetI	ASST	8 cut(s)	148, 266, 322, 492, 529, 547, 628, 663
SexAI	ACCWGGT	1 cut(s)	625
SfaNI	GCATC	1 cut(s)	550
SfcI	CTRYAG	1 cut(s)	396
SfuI	TTCGAA	1 cut(s)	442
SinI	GGWCC	1 cut(s)	386
SmiMI	CAYNNNNRTG	2 cut(s)	230, 758
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
SpeI	ACTAGT	1 cut(s)	755
Sse9I	AATT	5 cut(s)	92, 304, 352, 576, 718
SsiI	CCGC	6 cut(s)	109, 173, 428, 501, 694, 744
SspMI	CTAG	4 cut(s)	213, 261, 321, 756
StyD4I	CCNGG	3 cut(s)	19, 564, 625
TaaI	ACNGT	4 cut(s)	70, 201, 328, 397
TaqI	TCGA	3 cut(s)	442, 531, 787
TasI	AATT	5 cut(s)	92, 304, 352, 576, 718
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	7 cut(s)	137, 208, 334, 401, 569, 724, 766
Tru1I	TTAA	1 cut(s)	548
Tru9I	TTAA	1 cut(s)	548
TscAI	CASTG	2 cut(s)	331, 720
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	2 cut(s)	106, 524
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	7 cut(s)	128, 150, 183, 252, 483, 716, 815
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	2 cut(s)	331, 720
VpaK11BI	GGWCC	1 cut(s)	386
XspI	CTAG	4 cut(s)	213, 261, 321, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.