Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005886

Physical Location & Seq

Genomic Coordinates Forward (+)

3868974 .. 3871951

Gene Structure 2978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03980.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGCTTCGTAATGGTACCTGTGATATCTTTTATGTGTGTACTCCATATTTTGTGGTAATGTTCACGGCTTGTAATGTCTCTGTGGGCTCAAAACGCATCAGCAATGCTTATATCTCCCAGTCAACAAGAGCCATACGATCATTGTTAAGAGAGCATGATGTTTCTTTCTCTATGCCTCTTTGCCGTTCTAAAGTAGAGCAAGTCACTCCAGATGTTCTTGTTGAGCTCTCAGAGATGGAGAAACAGAATTTTGGCCAGACACGGCGCTTGAGTTCCTCTTCTGATATAGATAATACCCCAGAATCATTGCTAGTTTTCAATGGCAATAAAGATGTACATGGAGTGTTCGATATTTTGTTAAATTATAGGTCGTTGTTGACTGCTTTAGTGGTAATGGATGTCCCTGTATTATATTCACCTGTGCCGTTTCAGAATGCTGCCATTTCTTCTCCAGAGGTGAGTGCAAAAAATTTAAAGCGCATCACAGATAGTGACTCAACAGACACCACCACAAAAGATGATGGATCCATGCAAGGCTCATCTGCTGGTCTCTGCTCGAGTGTTGAAATTAAGGATGCATATCTTCCACCATGGATTATTTGCAGCCTATGTGCCCTTTTGGGTTCTGAAGGGAGAAGCTTTGAGGCGAGCTTTATGAACGAACCTTCATCAATCGGGTTGAATGTTGCTGTAGAAGCAGTTCATGAGAAATCTGATCGTCCTGATGCGCCAGCTGAAGACTTGCACAAAAGCTCCTCTACTTTTGGTATTCCAGAAGCCATCGTTACGCCTCACTTGCATTTGGGTTTCTTGAAAACTTTGAAGTTCTCAAATGGTTGTTATTCAGCTTCCCTTTCTCCTACCTTAGAAGCCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

293

Amino Acids

31.79

Weight (kDa)

5.09

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54750 AT3G54750 AT3G54750 AT3G54750 AT3G54750
fragaria_vesca	FvH4_6g21040 FvH4_6g21040 FvH4_6g21040
malus_domestica	MD12G1046200.v1.1 MD14G1044900.v1.1
prunus_persica	Prupe.7G089700_v2.0.a1 Prupe.7G089700_v2.0.a1
pyrus_communis	pycom12g03970 pycom12g03980 pycom14g03800 pycom14g03810
rosa_chinensis	RchiOBHm_Chr3g0477411
rosa_laevigata	RLG00000023723
rosa_multiflora	Rmu_ssc0000341.1_g000018
rosa_roxburghii	Rroxscaffold_6G00404170 Rroxscaffold_6G00404650
rosa_rugosa	Rorug03G0160600 Rorug03G0160700
rosa_samantha	Rh3AG210900 Rh3BG244300 Rh3CG238100 Rh3DG237800
rosa_wichuraiana	Rw3G019110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	14
AccB1I	GGYRCC	1 cut(s)	14
AclWI	GGATC	2 cut(s)	519, 532
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	2 cut(s)	247, 469
AcuI	CTGAAG	2 cut(s)	648, 756
AfaI	GTAC	3 cut(s)	16, 40, 336
AgsI	TTSAA	5 cut(s)	319, 566, 682, 814, 823
AluBI	AGCT	6 cut(s)	226, 639, 651, 734, 753, 848
AluI	AGCT	6 cut(s)	226, 639, 651, 734, 753, 848
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	2 cut(s)	82, 554
AlwI	GGATC	2 cut(s)	519, 532
Ama87I	CYCGRG	1 cut(s)	556
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	2 cut(s)	437, 603
ApoI	RAATTY	2 cut(s)	247, 469
Asp700I	GAANNNNTTC	1 cut(s)	699
Asp718I	GGTACC	1 cut(s)	14
AspLEI	GCGC	3 cut(s)	267, 480, 730
AsuHPI	GGTGA	2 cut(s)	408, 469
AvaI	CYCGRG	1 cut(s)	556
BaeGI	GKGCMC	1 cut(s)	616
BalI	TGGCCA	1 cut(s)	255
BamHI	GGATCC	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	2 cut(s)	89, 228
BbsI	GAAGAC	1 cut(s)	744
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	424, 615
BccI	CCATC	3 cut(s)	229, 515, 788
BceAI	ACGGC	4 cut(s)	81, 168, 278, 409
BcoDI	GTCTC	2 cut(s)	82, 554
BfaI	CTAG	2 cut(s)	311, 877
BfmI	CTRYAG	1 cut(s)	690
BfoI	RGCGCY	1 cut(s)	268
BisI	GCNGC	2 cut(s)	438, 604
BlsI	GCNGC	2 cut(s)	439, 605
BmeT110I	CYCGRG	1 cut(s)	556
BmiI	GGNNCC	2 cut(s)	16, 526
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	4 cut(s)	105, 489, 565, 715
BmuI	ACTGGG	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	744
BpmI	CTGGAG	2 cut(s)	192, 435
BpuEI	CTTGAG	1 cut(s)	289
BsaBI	GATNNNNATC	1 cut(s)	579
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	1 cut(s)	590
BsaXI	ACNNNNNCTCC	2 cut(s)	737, 767
Bse1I	ACTGG	1 cut(s)	118
Bse3DI	GCAATG	2 cut(s)	109, 305
Bse8I	GATNNNNATC	1 cut(s)	579
BseDI	CCNNGG	1 cut(s)	590
BseGI	GGATG	2 cut(s)	403, 580
BseJI	GATNNNNATC	1 cut(s)	579
BseMI	GCAATG	2 cut(s)	109, 305
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	745
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	2 cut(s)	424, 615
BshFI	GGCC	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	556
BslFI	GGGAC	1 cut(s)	386
BsmAI	GTCTC	2 cut(s)	82, 554
BsmFI	GGGAC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	1 cut(s)	554
BsoBI	CYCGRG	1 cut(s)	556
Bsp1286I	GDGCHC	3 cut(s)	89, 228, 616
Bsp1407I	TGTACA	1 cut(s)	334
Bsp143I	GATC	3 cut(s)	137, 524, 715
Bsp19I	CCATGG	1 cut(s)	590
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	1 cut(s)	242
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	2 cut(s)	16, 526
BspPI	GGATC	2 cut(s)	519, 532
BspT107I	GGYRCC	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	554
BsrDI	GCAATG	2 cut(s)	109, 305
BsrGI	TGTACA	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	590
BssMI	GATC	3 cut(s)	137, 524, 715
BssT1I	CCWWGG	1 cut(s)	590
Bst6I	CTCTTC	1 cut(s)	283
BstAUI	TGTACA	1 cut(s)	334
BstC8I	GCNNGC	2 cut(s)	649, 732
BstDEI	CTNAG	2 cut(s)	229, 865
BstDSI	CCRYGG	1 cut(s)	590
BstF5I	GGATG	2 cut(s)	403, 580
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	3 cut(s)	267, 480, 730
BstKTI	GATC	3 cut(s)	140, 527, 718
BstMAI	GTCTC	2 cut(s)	82, 554
BstMBI	GATC	3 cut(s)	137, 524, 715
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 695, 796
BstSFI	CTRYAG	1 cut(s)	690
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	2 cut(s)	424, 615
BstV2I	GAAGAC	1 cut(s)	744
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
BsuRI	GGCC	1 cut(s)	255
BtgI	CCRYGG	1 cut(s)	590
BtsCI	GGATG	2 cut(s)	403, 580
Cac8I	GCNNGC	2 cut(s)	649, 732
CciI	TCATGA	1 cut(s)	703
CfoI	GCGC	3 cut(s)	267, 480, 730
Csp6I	GTAC	3 cut(s)	15, 39, 335
CviAII	CATG	5 cut(s)	155, 338, 529, 591, 704
CviQI	GTAC	3 cut(s)	15, 39, 335
DdeI	CTNAG	2 cut(s)	229, 865
DpnI	GATC	3 cut(s)	139, 526, 717
DpnII	GATC	3 cut(s)	137, 524, 715
DraI	TTTAAA	1 cut(s)	474
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	590
Eco24I	GRGCYC	2 cut(s)	89, 228
Eco31I	GGTCTC	1 cut(s)	554
Eco32I	GATATC	1 cut(s)	25
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	2 cut(s)	648, 756
Eco88I	CYCGRG	1 cut(s)	556
EcoICRI	GAGCTC	1 cut(s)	226
EcoRV	GATATC	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	590
EcoT22I	ATGCAT	1 cut(s)	580
EcoT38I	GRGCYC	2 cut(s)	89, 228
ErhI	CCWWGG	1 cut(s)	590
FaeI	CATG	5 cut(s)	158, 341, 532, 594, 707
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	5 cut(s)	154, 337, 528, 590, 703
Fnu4HI	GCNGC	2 cut(s)	438, 604
FokI	GGATG	2 cut(s)	410, 587
FriOI	GRGCYC	2 cut(s)	89, 228
Fsp4HI	GCNGC	2 cut(s)	438, 604
FspBI	CTAG	2 cut(s)	311, 877
GlaI	GCGC	3 cut(s)	266, 479, 729
GluI	GCNGC	2 cut(s)	438, 604
GsuI	CTGGAG	2 cut(s)	192, 435
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	1 cut(s)	255
HhaI	GCGC	3 cut(s)	267, 480, 730
Hin1II	CATG	5 cut(s)	158, 341, 532, 594, 707
Hin6I	GCGC	3 cut(s)	265, 478, 728
HinP1I	GCGC	3 cut(s)	265, 478, 728
HincII	GTYRAC	2 cut(s)	123, 378
HindII	GTYRAC	2 cut(s)	123, 378
HindIII	AAGCTT	1 cut(s)	637
HinfI	GANTC	2 cut(s)	302, 494
HphI	GGTGA	2 cut(s)	408, 469
Hpy166II	GTNNAC	4 cut(s)	39, 63, 123, 378
Hpy188I	TCNGA	5 cut(s)	232, 283, 432, 628, 715
Hpy188III	TCNNGA	6 cut(s)	209, 452, 704, 722, 773, 811
Hpy8I	GTNNAC	4 cut(s)	39, 63, 123, 378
HpyAV	CCTTC	2 cut(s)	623, 675
HpyCH4V	TGCA	6 cut(s)	464, 532, 578, 603, 745, 799
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 695, 796
HpyF3I	CTNAG	2 cut(s)	229, 865
Hsp92II	CATG	5 cut(s)	158, 341, 532, 594, 707
HspAI	GCGC	3 cut(s)	265, 478, 728
KpnI	GGTACC	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	137, 524, 715
LmnI	GCTCC	1 cut(s)	758
Lsp1109I	GCAGC	2 cut(s)	424, 615
LweI	GCATC	4 cut(s)	105, 489, 565, 715
MaeI	CTAG	2 cut(s)	311, 877
MaeIII	GTNAC	3 cut(s)	202, 491, 784
MalI	GATC	3 cut(s)	139, 526, 717
MboI	GATC	3 cut(s)	137, 524, 715
MboII	GAAGA	4 cut(s)	270, 438, 575, 749
MflI	RGATCY	1 cut(s)	524
MhlI	GDGCHC	3 cut(s)	89, 228, 616
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	4 cut(s)	247, 361, 469, 567
MluNI	TGGCCA	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	488
MnlI	CCTC	6 cut(s)	186, 286, 448, 637, 766, 801
Mox20I	TGGCCA	1 cut(s)	255
Mph1103I	ATGCAT	1 cut(s)	580
MroXI	GAANNNNTTC	1 cut(s)	699
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	4 cut(s)	146, 359, 473, 570
Msp20I	TGGCCA	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	734
Mva1269I	GAATGC	1 cut(s)	439
MwoI	GCNNNNNNNGC	3 cut(s)	93, 695, 796
NcoI	CCATGG	1 cut(s)	590
NdeII	GATC	3 cut(s)	137, 524, 715
NlaIII	CATG	5 cut(s)	158, 341, 532, 594, 707
NlaIV	GGNNCC	2 cut(s)	16, 526
NmuCI	GTSAC	2 cut(s)	202, 491
NsiI	ATGCAT	1 cut(s)	580
PaeR7I	CTCGAG	1 cut(s)	556
PagI	TCATGA	1 cut(s)	703
PctI	GAATGC	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	2 cut(s)	439, 605
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
Psp124BI	GAGCTC	1 cut(s)	228
PspN4I	GGNNCC	2 cut(s)	16, 526
PspXI	VCTCGAGB	1 cut(s)	556
PsrI	GAACNNNNNNTAC	2 cut(s)	684, 716
PsuI	RGATCY	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	3 cut(s)	16, 40, 336
RsaNI	GTAC	3 cut(s)	15, 39, 335
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	4 cut(s)	146, 359, 473, 570
SatI	GCNGC	2 cut(s)	438, 604
Sau3AI	GATC	3 cut(s)	137, 524, 715
SchI	GAGTC	1 cut(s)	488
SduI	GDGCHC	3 cut(s)	89, 228, 616
SfaNI	GCATC	4 cut(s)	105, 489, 565, 715
SfcI	CTRYAG	1 cut(s)	690
Sfr274I	CTCGAG	1 cut(s)	556
SlaI	CTCGAG	1 cut(s)	556
SmlI	CTYRAG	2 cut(s)	268, 556
SmoI	CTYRAG	2 cut(s)	268, 556
Sse9I	AATT	4 cut(s)	247, 361, 469, 567
SspMI	CTAG	2 cut(s)	311, 877
SstI	GAGCTC	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	590
TaqI	TCGA	2 cut(s)	348, 557
TasI	AATT	4 cut(s)	247, 361, 469, 567
TatI	WGTACW	2 cut(s)	38, 334
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	4 cut(s)	146, 359, 473, 570
Tru9I	TTAA	4 cut(s)	146, 359, 473, 570
TseFI	GTSAC	2 cut(s)	202, 491
TseI	GCWGC	2 cut(s)	437, 603
Tsp45I	GTSAC	2 cut(s)	202, 491
TspDTI	ATGAA	3 cut(s)	657, 671, 692
XapI	RAATTY	2 cut(s)	247, 469
XhoI	CTCGAG	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	2 cut(s)	311, 877
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.