Rh3BG244300

Protein downstream neighbor of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0005886
Physical Location & Seq
Forward (+)
23140339 .. 23145555
5217 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG244300.1

Sequence Viewer

Length: 1545 bp
ATGGAGCCACCTATCAGCCTTAAGAGTCTCTCTGCGTGCTCTAGTCTGGCTTCCAAGAGAAAGCACCAACAAATGGGGCCAGAGATTGCAGCCGAAAGCACAGAAAAAGGTGTAGCTAAAGCGGGTCAAGCAAATGAAAACTCTAGTCAAAGTACTTTCCGTAGTGTTACTGAGATTTCATCGGCTGGTGATAGGTCATCTGGCTTTGGATCTGTTGATGTGGGTAAAGCAATGAAAGGAATGGCCGCCCTTGAATCCTCAATTGCTACTGGTTTACCTGCTAATTCTTCTGAAAGAAATGTGGATCCTTCATCAACTGGTTTTGGCAACTTTTGCTTGCCTGGTGGCAAGGTTCCTCTGGATTTTACTTTGAAAACTAGTATGCGAGTGGTTTCCTCTTCCCCAGCGAGTCGGATTCATAAGTCAATCACACGCTCCACATTCAAATTCGATAGTTTTGAAGATCAAATTATGAGCGGTAGCTCAGGGCTCACATCAACTTCTGAAGTCAGTTCTAAACTTTTACATTCATGGGTTTATCCTCAATCTACCCTGCCACCTTCTCTTATACAAGTGTTGACCTCCTCAACAGCCGAGGGAGTTGAAATGGATTTTTTAACAAAACGACATGTAGCATGGGAGGACTCATTTCGGAGTCTATACTACATGCTTCGAAATGGTGCCTGTAATATATTTTATGTGTGTACTCCATATTTTGTGGTAATGTTTACTGGTCGGGATGTTGCTGTGGGTACCAAACGCCTCACCAATGCTTGTATCTCCCAGTCAACAAGAGTCTTCCAATCATTGTTAAGAGAGAATGATGTTGCCTTCTCTATGCCCCTTTGCCGTTCTAAAGTGGAGCAAGTCACTACAGAAGTCCTTGATGAACTCTCAGAGATGCAAGAATTGGGCCAGACTCGACGCACACGATCATTGGTTGATTTAGATAATACCCCAGAATCTTTGCTGGTCATTAGTGGGAATAAGAATGTACATGGCCTGTTTGATATTTTATTAAATTATAGATCTTTCATGACTACTTTGATAGGAGTGGATGTTCCTGTACTATATTCACCCGTGCCATTTCAGAATGCTGCCATCTCTTCTCCACAGGTTAAATGCATGGATCTGAAAAGAACAGAACAGGTGGTTGCTTCAAACAAAGGATCTGTTTCACAAGATGTTGGATCTATGCAAAGCATATCTTCTGGTCTCTGCTCTAGTGTTGAAATTAAGGATGCATTTATTCCACCATGGATTATATGCAGTGTATGTGCTGTAGTGGGATCTGAAGGGGGAAGCTTTGAGGCGAGTTTCACAAATGAACCTACCTCAATCAGTTTGAATGGTTCAATAGAAGCAGCTGCTGAGAAATCTGATTCTCAAGATGGGATAGCTGAAGATTTGCGAAGTAGCAGTTCAGCTTTTGGTATTTCAAAAGCCATTGTAACACCAAACTTGCGCTTGGGTTTACTAAAGAGCTTGAAGTTTTCAAATGGTTCTTATATGGCTTCTGTTTCTCCTACCTTGGATTCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

514

Amino Acids

55.1

Weight (kDa)

6.07

Isoelectric Point (pI)

60.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 286
Acc65I GGTACC 1 cut(s) 752
AccB1I GGYRCC 2 cut(s) 680, 752
AccB7I CCANNNNNTGG 1 cut(s) 73
AccBSI CCGCTC 1 cut(s) 477
AciI CCGC 3 cut(s) 122, 246, 477
AclWI GGATC 7 cut(s) 217, 299, 312, 1137, 1177, 1198, 1297
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 3 cut(s) 525, 1314, 1422
AfaI GTAC 5 cut(s) 154, 706, 754, 996, 1068
AfiI CCNNNNNNNGG 1 cut(s) 73
AflII CTTAAG 1 cut(s) 20
AflIII ACRYGT 1 cut(s) 628
AhlI ACTAGT 1 cut(s) 377
AjnI CCWGG 1 cut(s) 340
AloI GAACNNNNNNTCC 2 cut(s) 1044, 1076
AluBI AGCT 7 cut(s) 116, 483, 1305, 1367, 1400, 1427, 1485
AluI AGCT 7 cut(s) 116, 483, 1305, 1367, 1400, 1427, 1485
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 2 cut(s) 32, 1220
AlwI GGATC 7 cut(s) 217, 299, 312, 1137, 1177, 1198, 1297
AlwNI CAGNNNCTG 1 cut(s) 1370
AoxI GGCC 4 cut(s) 77, 243, 913, 1000
ApeKI GCWGC 4 cut(s) 89, 1097, 1364, 1367
ApoI RAATTY 1 cut(s) 446
Asp718I GGTACC 1 cut(s) 752
AspLEI GCGC 1 cut(s) 1467
AspS9I GGNCC 2 cut(s) 77, 913
AsuHPI GGTGA 3 cut(s) 200, 757, 1068
AsuII TTCGAA 1 cut(s) 673
BamHI GGATCC 1 cut(s) 304
BanI GGYRCC 2 cut(s) 680, 752
BanII GRGCYC 1 cut(s) 492
BbsI GAAGAC 1 cut(s) 790
Bbv12I GWGCWC 1 cut(s) 41
BbvI GCAGC 4 cut(s) 101, 1084, 1354, 1376
BccI CCATC 2 cut(s) 1109, 1385
BceAI ACGGC 1 cut(s) 834
BciT130I CCWGG 1 cut(s) 342
BcoDI GTCTC 2 cut(s) 32, 1220
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 4 cut(s) 42, 144, 378, 1224
BfmI CTRYAG 2 cut(s) 873, 1281
BfrI CTTAAG 1 cut(s) 20
BfuAI ACCTGC 1 cut(s) 286
BglII AGATCT 1 cut(s) 1028
BisI GCNGC 5 cut(s) 90, 246, 1098, 1365, 1368
BlsI GCNGC 5 cut(s) 91, 247, 1099, 1366, 1369
BmcAI AGTACT 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 342
BmgT120I GGNCC 2 cut(s) 77, 913
BmiI GGNNCC 6 cut(s) 6, 78, 306, 354, 682, 754
BmrFI CCNGG 1 cut(s) 342
BmrI ACTGGG 1 cut(s) 778
BmsI GCATC 2 cut(s) 891, 1231
BmuI ACTGGG 1 cut(s) 778
BpiI GAAGAC 1 cut(s) 790
Bpu10I CCTNAGC 1 cut(s) 484
Bpu14I TTCGAA 1 cut(s) 673
BpuEI CTTGAG 1 cut(s) 1371
BsaI GGTCTC 1 cut(s) 1220
BsaJI CCNNGG 3 cut(s) 594, 1256, 1530
BsaXI ACNNNNNCTCC 2 cut(s) 1044, 1074
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 4 cut(s) 274, 322, 736, 784
Bse3DI GCAATG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 3 cut(s) 594, 1256, 1530
BseGI GGATG 3 cut(s) 745, 1063, 1246
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 4 cut(s) 162, 498, 909, 1362
BseNI ACTGG 4 cut(s) 274, 322, 736, 784
BseRI GAGGAG 1 cut(s) 574
BseXI GCAGC 4 cut(s) 101, 1084, 1354, 1376
BseYI CCCAGC 1 cut(s) 403
BshFI GGCC 4 cut(s) 79, 245, 915, 1002
BshNI GGYRCC 2 cut(s) 680, 752
BsiHKAI GWGCWC 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 2 cut(s) 32, 1220
BsmI GAATGC 1 cut(s) 1099
BsnI GGCC 4 cut(s) 79, 245, 915, 1002
Bso31I GGTCTC 1 cut(s) 1220
Bsp119I TTCGAA 1 cut(s) 673
Bsp1286I GDGCHC 2 cut(s) 41, 492
Bsp1407I TGTACA 1 cut(s) 994
Bsp143I GATC 9 cut(s) 209, 304, 463, 932, 1028, 1129, 1169, 1190, 1289
Bsp19I CCATGG 1 cut(s) 1256
BspACI CCGC 3 cut(s) 122, 246, 477
BspANI GGCC 4 cut(s) 79, 245, 915, 1002
BspCNI CTCAG 4 cut(s) 163, 497, 908, 1363
BspHI TCATGA 1 cut(s) 1035
BspLI GGNNCC 6 cut(s) 6, 78, 306, 354, 682, 754
BspMI ACCTGC 1 cut(s) 286
BspPI GGATC 7 cut(s) 217, 299, 312, 1137, 1177, 1198, 1297
BspT104I TTCGAA 1 cut(s) 673
BspT107I GGYRCC 2 cut(s) 680, 752
BspTI CTTAAG 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 1220
BsrBI CCGCTC 1 cut(s) 477
BsrDI GCAATG 1 cut(s) 237
BsrGI TGTACA 1 cut(s) 994
BsrI ACTGG 4 cut(s) 274, 322, 736, 784
BssECI CCNNGG 3 cut(s) 594, 1256, 1530
BssMI GATC 9 cut(s) 209, 304, 463, 932, 1028, 1129, 1169, 1190, 1289
BssT1I CCWWGG 2 cut(s) 1256, 1530
Bst2UI CCWGG 1 cut(s) 342
Bst6I CTCTTC 2 cut(s) 403, 1111
BstAFI CTTAAG 1 cut(s) 20
BstAPI GCANNNNNTGC 1 cut(s) 333
BstAUI TGTACA 1 cut(s) 994
BstBI TTCGAA 1 cut(s) 673
BstC8I GCNNGC 2 cut(s) 37, 338
BstDEI CTNAG 4 cut(s) 171, 484, 895, 1371
BstDSI CCRYGG 1 cut(s) 1256
BstF5I GGATG 3 cut(s) 745, 1063, 1246
BstHHI GCGC 1 cut(s) 1467
BstKTI GATC 9 cut(s) 212, 307, 466, 935, 1031, 1132, 1172, 1193, 1292
BstMAI GTCTC 2 cut(s) 32, 1220
BstMBI GATC 9 cut(s) 209, 304, 463, 932, 1028, 1129, 1169, 1190, 1289
BstMWI GCNNNNNNNGC 2 cut(s) 128, 333
BstNI CCWGG 1 cut(s) 342
BstNSI RCATGY 2 cut(s) 632, 670
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 2 cut(s) 873, 1281
BstV1I GCAGC 4 cut(s) 101, 1084, 1354, 1376
BstV2I GAAGAC 1 cut(s) 790
BstX2I RGATCY 7 cut(s) 209, 304, 1028, 1129, 1169, 1190, 1289
BstYI RGATCY 7 cut(s) 209, 304, 1028, 1129, 1169, 1190, 1289
BsuRI GGCC 4 cut(s) 79, 245, 915, 1002
BtgI CCRYGG 1 cut(s) 1256
BtsCI GGATG 3 cut(s) 745, 1063, 1246
BtsI GCAGTG 1 cut(s) 1276
BtsIMutI CAGTG 1 cut(s) 1276
BveI ACCTGC 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 37, 338
CaiI CAGNNNCTG 1 cut(s) 1370
CciI TCATGA 1 cut(s) 1035
CfoI GCGC 1 cut(s) 1467
Cfr13I GGNCC 2 cut(s) 77, 913
CseI GACGC 1 cut(s) 933
Csp6I GTAC 5 cut(s) 153, 705, 753, 995, 1067
CviAII CATG 8 cut(s) 531, 629, 636, 667, 998, 1036, 1126, 1257
CviQI GTAC 5 cut(s) 153, 705, 753, 995, 1067
DdeI CTNAG 4 cut(s) 171, 484, 895, 1371
DpnI GATC 9 cut(s) 211, 306, 465, 934, 1030, 1131, 1171, 1192, 1291
DpnII GATC 9 cut(s) 209, 304, 463, 932, 1028, 1129, 1169, 1190, 1289
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 2 cut(s) 403, 1111
EarI CTCTTC 2 cut(s) 403, 1111
Eco130I CCWWGG 2 cut(s) 1256, 1530
Eco24I GRGCYC 1 cut(s) 492
Eco31I GGTCTC 1 cut(s) 1220
Eco57I CTGAAG 3 cut(s) 525, 1314, 1422
EcoRII CCWGG 1 cut(s) 340
EcoT14I CCWWGG 2 cut(s) 1256, 1530
EcoT22I ATGCAT 2 cut(s) 1127, 1246
EcoT38I GRGCYC 1 cut(s) 492
ErhI CCWWGG 2 cut(s) 1256, 1530
FaeI CATG 8 cut(s) 534, 632, 639, 670, 1001, 1039, 1129, 1260
FalI AAGNNNNNCTT 2 cut(s) 1192, 1224
FatI CATG 8 cut(s) 530, 628, 635, 666, 997, 1035, 1125, 1256
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 5 cut(s) 90, 246, 1098, 1365, 1368
FokI GGATG 3 cut(s) 752, 1070, 1253
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 5 cut(s) 90, 246, 1098, 1365, 1368
FspBI CTAG 4 cut(s) 42, 144, 378, 1224
GlaI GCGC 1 cut(s) 1466
GluI GCNGC 5 cut(s) 90, 246, 1098, 1365, 1368
GsaI CCCAGC 1 cut(s) 407
HaeIII GGCC 4 cut(s) 79, 245, 915, 1002
HgaI GACGC 1 cut(s) 933
HhaI GCGC 1 cut(s) 1467
Hin1II CATG 8 cut(s) 534, 632, 639, 670, 1001, 1039, 1129, 1260
Hin6I GCGC 1 cut(s) 1465
HinP1I GCGC 1 cut(s) 1465
HincII GTYRAC 2 cut(s) 579, 789
HindII GTYRAC 2 cut(s) 579, 789
HindIII AAGCTT 1 cut(s) 1303
HphI GGTGA 3 cut(s) 200, 757, 1068
Hpy166II GTNNAC 6 cut(s) 275, 579, 705, 729, 789, 1475
Hpy188I TCNGA 9 cut(s) 292, 414, 505, 654, 898, 1092, 1134, 1294, 1381
Hpy188III TCNNGA 4 cut(s) 359, 737, 1036, 1388
Hpy8I GTNNAC 6 cut(s) 275, 579, 705, 729, 789, 1475
Hpy99I CGWCG 1 cut(s) 927
HpyAV CCTTC 4 cut(s) 318, 570, 841, 1289
HpyCH4V TGCA 6 cut(s) 89, 904, 1125, 1198, 1244, 1269
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 333
HpyF3I CTNAG 4 cut(s) 171, 484, 895, 1371
Hsp92II CATG 8 cut(s) 534, 632, 639, 670, 1001, 1039, 1129, 1260
HspAI GCGC 1 cut(s) 1465
KpnI GGTACC 1 cut(s) 756
Kzo9I GATC 9 cut(s) 209, 304, 463, 932, 1028, 1129, 1169, 1190, 1289
LmnI GCTCC 3 cut(s) 4, 440, 862
Lsp1109I GCAGC 4 cut(s) 101, 1084, 1354, 1376
LweI GCATC 2 cut(s) 891, 1231
MaeI CTAG 4 cut(s) 42, 144, 378, 1224
MaeIII GTNAC 3 cut(s) 166, 868, 1450
MalI GATC 9 cut(s) 211, 306, 465, 934, 1030, 1131, 1171, 1192, 1291
MbiI CCGCTC 1 cut(s) 477
MboI GATC 9 cut(s) 209, 304, 463, 932, 1028, 1129, 1169, 1190, 1289
MboII GAAGA 7 cut(s) 279, 390, 473, 790, 1098, 1200, 1415
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 7 cut(s) 209, 304, 1028, 1129, 1169, 1190, 1289
MhlI GDGCHC 2 cut(s) 41, 492
MluCI AATT 7 cut(s) 261, 283, 446, 468, 908, 1021, 1233
MlyI GAGTC 6 cut(s) 34, 418, 638, 664, 804, 913
MmeI TCCRAC 2 cut(s) 392, 1168
Mph1103I ATGCAT 2 cut(s) 1127, 1246
MseI TTAA 6 cut(s) 21, 617, 812, 1019, 1119, 1236
MspA1I CMGCKG 1 cut(s) 1367
MspCI CTTAAG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 342
MunI CAATTG 1 cut(s) 261
Mva1269I GAATGC 1 cut(s) 1099
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 2 cut(s) 128, 333
NcoI CCATGG 1 cut(s) 1256
NdeII GATC 9 cut(s) 209, 304, 463, 932, 1028, 1129, 1169, 1190, 1289
NlaIII CATG 8 cut(s) 534, 632, 639, 670, 1001, 1039, 1129, 1260
NlaIV GGNNCC 6 cut(s) 6, 78, 306, 354, 682, 754
NmeAIII GCCGAG 1 cut(s) 619
NmuCI GTSAC 1 cut(s) 868
NsiI ATGCAT 2 cut(s) 1127, 1246
NspI RCATGY 2 cut(s) 632, 670
NspV TTCGAA 1 cut(s) 673
PagI TCATGA 1 cut(s) 1035
PciI ACATGT 1 cut(s) 628
PcsI WCGNNNNNNNCGW 1 cut(s) 928
PctI GAATGC 1 cut(s) 1099
PfeI GAWTC 5 cut(s) 254, 415, 962, 1382, 1535
PflMI CCANNNNNTGG 1 cut(s) 73
PkrI GCNGC 5 cut(s) 91, 247, 1099, 1366, 1369
PleI GAGTC 6 cut(s) 33, 417, 638, 663, 803, 913
PpsI GAGTC 6 cut(s) 33, 417, 638, 663, 803, 913
PscI ACATGT 1 cut(s) 628
Psp6I CCWGG 1 cut(s) 340
PspFI CCCAGC 1 cut(s) 403
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 6 cut(s) 6, 78, 306, 354, 682, 754
PspPI GGNCC 2 cut(s) 77, 913
PstNI CAGNNNCTG 1 cut(s) 1370
PsuI RGATCY 7 cut(s) 209, 304, 1028, 1129, 1169, 1190, 1289
PvuII CAGCTG 1 cut(s) 1367
RsaI GTAC 5 cut(s) 154, 706, 754, 996, 1068
RsaNI GTAC 5 cut(s) 153, 705, 753, 995, 1067
SaqAI TTAA 6 cut(s) 21, 617, 812, 1019, 1119, 1236
SatI GCNGC 5 cut(s) 90, 246, 1098, 1365, 1368
Sau3AI GATC 9 cut(s) 209, 304, 463, 932, 1028, 1129, 1169, 1190, 1289
Sau96I GGNCC 2 cut(s) 77, 913
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 6 cut(s) 34, 418, 638, 664, 804, 913
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 2 cut(s) 41, 492
SfaNI GCATC 2 cut(s) 891, 1231
SfcI CTRYAG 2 cut(s) 873, 1281
SfuI TTCGAA 1 cut(s) 673
SmlI CTYRAG 2 cut(s) 20, 1386
SmoI CTYRAG 2 cut(s) 20, 1386
SpeI ACTAGT 1 cut(s) 377
Sse9I AATT 7 cut(s) 261, 283, 446, 468, 908, 1021, 1233
SsiI CCGC 3 cut(s) 122, 246, 477
SspMI CTAG 4 cut(s) 42, 144, 378, 1224
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 2 cut(s) 1256, 1530
TaqI TCGA 3 cut(s) 450, 673, 922
TasI AATT 7 cut(s) 261, 283, 446, 468, 908, 1021, 1233
TatI WGTACW 4 cut(s) 152, 704, 994, 1066
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 5 cut(s) 254, 415, 962, 1382, 1535
Tru1I TTAA 6 cut(s) 21, 617, 812, 1019, 1119, 1236
Tru9I TTAA 6 cut(s) 21, 617, 812, 1019, 1119, 1236
TscAI CASTG 1 cut(s) 1276
TseFI GTSAC 1 cut(s) 868
TseI GCWGC 4 cut(s) 89, 1097, 1364, 1367
Tsp45I GTSAC 1 cut(s) 868
TspDTI ATGAA 9 cut(s) 150, 168, 248, 300, 407, 519, 903, 1024, 1341
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 1 cut(s) 1276
Van91I CCANNNNNTGG 1 cut(s) 73
Vha464I CTTAAG 1 cut(s) 20
XapI RAATTY 1 cut(s) 446
XceI RCATGY 2 cut(s) 632, 670
XspI CTAG 4 cut(s) 42, 144, 378, 1224
ZrmI AGTACT 1 cut(s) 154
Zsp2I ATGCAT 2 cut(s) 1127, 1246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.