Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009016

Physical Location & Seq

Genomic Coordinates Forward (+)

20531069 .. 20533285

Gene Structure 2217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55380.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCTAATAACCAAGCAAGCCTTCTTCTGCAGAAACAGCTTAAAGATCTGTGTAAGAAACCTGTTGATGGTTTCTCTGCTGGCCTCGTTGATGAGAAGAACGTTTTCCAATGGAGCGTCTCTATTATGGGTCCTCCTGATACTTTGTATGAAGGTGGCTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCAGTTTCACCACCAACTGTGACGTTTACCTCGGAGATGTGGCATCCTAATGTTTATTCTGATGGAAAAGTTTGCATTTCTATTCTTCATCCTCCTGGTGATGATCCTCATGGATACGAGCTTGCCTCTGAACGTTGGACCCCTGTCCATACGGTAGAAAGCATTGTGTTGAGTATCATATCGATGCTCTCAGGTCCCAACGATGAGTCACCAGCGAATGTGGAAGCTGCAAAGGAATGGAGAGACAACAGAGCAGAGTTTAGGAAGAAAGTGAGTCGCTGTGTGAGAAGATCGCAAGAGATGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

167

Amino Acids

18.73

Weight (kDa)

5.35

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	10 - 133	1.9e-35	Ubiquitin-conjugating enzyme
UQ_con	PF00179	149 - 193	4.6e-09	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55380
fragaria_vesca	FvH4_7g22080
malus_domestica	MD01G1125800.v1.1 MD07G1195500.v1.1
prunus_persica	Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1
pyrus_communis	pycom01g15160
rosa_chinensis	RchiOBHm_Chr1g0366471
rosa_laevigata	RLG00000027345
rosa_multiflora	Rmu_sc0027823.1_g000001 Rmu_ssc0000250.1_g000018
rosa_roxburghii	Rroxscaffold_4G00289910
rosa_rugosa	Rorug01G0330100
rosa_samantha	Rh1AG338000 Rh1CG314600 Rh1DG331300
rosa_wichuraiana	Rw1G029930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	184
AclI	AACGTT	2 cut(s)	102, 328
AclWI	GGATC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
AluBI	AGCT	3 cut(s)	40, 316, 422
AluI	AGCT	3 cut(s)	40, 316, 422
Alw26I	GTCTC	2 cut(s)	124, 432
AlwI	GGATC	1 cut(s)	293
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	422
Asp700I	GAANNNNTTC	1 cut(s)	104
AspS9I	GGNCC	3 cut(s)	131, 333, 389
AsuHPI	GGTGA	3 cut(s)	195, 305, 396
AvaII	GGWCC	3 cut(s)	131, 333, 389
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	2 cut(s)	62, 251
BcgI	CGANNNNNNTGC	2 cut(s)	159, 193
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	302
BcoDI	GTCTC	2 cut(s)	124, 432
BfmI	CTRYAG	1 cut(s)	29
BfuI	GTATCC	1 cut(s)	302
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	3 cut(s)	131, 333, 389
BmgT120I	GGNCC	3 cut(s)	131, 333, 389
BmiI	GGNNCC	3 cut(s)	132, 335, 391
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	3 cut(s)	247, 369, 486
BoxI	GACNNNNGTC	1 cut(s)	338
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
Bsa29I	ATCGAT	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	197
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	291
BseCI	ATCGAT	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	238, 283
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	409
BshFI	GGCC	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	377
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	2 cut(s)	124, 432
BsmBI	CGTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	375
BsnI	GGCC	1 cut(s)	84
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	46, 298, 485
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	1 cut(s)	398
BspDI	ATCGAT	1 cut(s)	377
BspEI	TCCGGA	1 cut(s)	184
BspLI	GGNNCC	3 cut(s)	132, 335, 391
BspMAI	CTGCAG	1 cut(s)	33
BspPI	GGATC	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	3 cut(s)	46, 298, 485
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	214, 349
BstAPI	GCANNNNNTGC	1 cut(s)	496
BstC8I	GCNNGC	3 cut(s)	19, 82, 318
BstDEI	CTNAG	1 cut(s)	385
BstF5I	GGATG	2 cut(s)	238, 283
BstKTI	GATC	3 cut(s)	49, 301, 488
BstMAI	GTCTC	2 cut(s)	124, 432
BstMBI	GATC	3 cut(s)	46, 298, 485
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 496
BstNI	CCWGG	1 cut(s)	291
BstPAI	GACNNNNGTC	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	409
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	377
BsuI	GTATCC	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	84
BsuTUI	ATCGAT	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	238, 283
Cac8I	GCNNGC	3 cut(s)	19, 82, 318
Cfr13I	GGNCC	3 cut(s)	131, 333, 389
ClaI	ATCGAT	1 cut(s)	377
CseI	GACGC	1 cut(s)	106
CviAII	CATG	1 cut(s)	305
CviJI	RGCY	7 cut(s)	5, 21, 40, 84, 159, 316, 422
CviKI_1	RGCY	7 cut(s)	5, 21, 40, 84, 159, 316, 422
DdeI	CTNAG	1 cut(s)	385
DpnI	GATC	3 cut(s)	48, 300, 487
DpnII	GATC	3 cut(s)	46, 298, 485
Eco47I	GGWCC	3 cut(s)	131, 333, 389
EcoO109I	RGGNCCY	2 cut(s)	131, 389
EcoRII	CCWGG	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	1 cut(s)	308
FaiI	YATR	7 cut(s)	128, 150, 176, 306, 345, 374, 502
FalI	AAGNNNNNCTT	1 cut(s)	38
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	1 cut(s)	304
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	2 cut(s)	225, 270
Fsp4HI	GCNGC	1 cut(s)	423
GluI	GCNGC	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	1 cut(s)	185
HgaI	GACGC	1 cut(s)	106
Hin1II	CATG	1 cut(s)	308
HinfI	GANTC	2 cut(s)	401, 469
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	3 cut(s)	195, 305, 396
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	3 cut(s)	229, 256, 325
Hpy188III	TCNNGA	2 cut(s)	137, 185
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	2 cut(s)	32, 146
HpyCH4III	ACNGT	2 cut(s)	214, 349
HpyCH4IV	ACGT	3 cut(s)	102, 218, 328
HpyCH4V	TGCA	4 cut(s)	31, 170, 270, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 496
HpyF3I	CTNAG	1 cut(s)	385
HpySE526I	ACGT	3 cut(s)	102, 218, 328
Hsp92II	CATG	1 cut(s)	308
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	46, 298, 485
LmnI	GCTCC	1 cut(s)	114
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	3 cut(s)	247, 369, 486
MaeII	ACGT	3 cut(s)	102, 218, 328
MaeIII	GTNAC	2 cut(s)	214, 402
MalI	GATC	3 cut(s)	48, 300, 487
MboI	GATC	3 cut(s)	46, 298, 485
MboII	GAAGA	5 cut(s)	17, 109, 272, 472, 495
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	2 cut(s)	171, 190
MlyI	GAGTC	2 cut(s)	410, 478
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	6 cut(s)	95, 144, 235, 297, 312, 331
MroI	TCCGGA	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	104
MseI	TTAA	2 cut(s)	42, 165
MslI	CAYNNNNRTG	2 cut(s)	243, 377
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	37, 496
NdeII	GATC	3 cut(s)	46, 298, 485
NlaIII	CATG	1 cut(s)	308
NlaIV	GGNNCC	3 cut(s)	132, 335, 391
NmuCI	GTSAC	2 cut(s)	214, 402
PdmI	GAANNNNTTC	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	424
PleI	GAGTC	2 cut(s)	409, 477
PpsI	GAGTC	2 cut(s)	409, 477
PpuMI	RGGWCCY	2 cut(s)	131, 389
PshAI	GACNNNNGTC	1 cut(s)	338
Psp1406I	AACGTT	2 cut(s)	102, 328
Psp5II	RGGWCCY	2 cut(s)	131, 389
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	3 cut(s)	132, 335, 391
PspPI	GGNCC	3 cut(s)	131, 333, 389
PspPPI	RGGWCCY	2 cut(s)	131, 389
PstI	CTGCAG	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	46
RseI	CAYNNNNRTG	2 cut(s)	243, 377
SaqAI	TTAA	2 cut(s)	42, 165
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	3 cut(s)	46, 298, 485
Sau96I	GGNCC	3 cut(s)	131, 333, 389
SchI	GAGTC	2 cut(s)	410, 478
ScrFI	CCNGG	1 cut(s)	291
SfaNI	GCATC	3 cut(s)	247, 369, 486
SfcI	CTRYAG	1 cut(s)	29
SinI	GGWCC	3 cut(s)	131, 333, 389
SmiMI	CAYNNNNRTG	2 cut(s)	243, 377
Sse9I	AATT	2 cut(s)	171, 190
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	2 cut(s)	214, 349
TaiI	ACGT	3 cut(s)	105, 221, 331
TaqI	TCGA	1 cut(s)	377
TasI	AATT	2 cut(s)	171, 190
Tru1I	TTAA	2 cut(s)	42, 165
Tru9I	TTAA	2 cut(s)	42, 165
TseFI	GTSAC	2 cut(s)	214, 402
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	2 cut(s)	214, 402
TspDTI	ATGAA	2 cut(s)	165, 272
VpaK11BI	GGWCC	3 cut(s)	131, 333, 389
XmnI	GAANNNNTTC	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.