Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027823.1

Orthogroup ID

OG0009016

Physical Location & Seq

Genomic Coordinates Reverse (-)

278 .. 2609

Gene Structure 2332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027823.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atggacgcgccttcatcccaagccagtctcctcctccaaaaacaactcaaagatctttgcaagcacccagttgatggattctcggctggtttgatcgacgaggctaatatcttcgaatggaacgtcacgattattggcccccctgatactctctatgatggtggtttcttcaatgctattatgagcttccctaacgattaccctaataaccctcctacagttagttttacctcagagatatggcaccctaatgtttactcggatggaaaggtttgcatttcaattcttcatcccccgggtgacgatcctaatggctacgagctggcgagtgagcgctggaatccagtccatacagttgagagcattgtgttgagtataatatcaatgctttcaagcccaaatgatgagtctcctgcaaatgttgaagcagcgaaacaatggagagaagatagatacggtttcaggaagagagtaggtcgctgcgtgaggaagtcacaagaaatgctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

169

Amino Acids

18.9

Weight (kDa)

4.88

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55380
fragaria_vesca	FvH4_7g22080
malus_domestica	MD01G1125800.v1.1 MD07G1195500.v1.1
prunus_persica	Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1
pyrus_communis	pycom01g15160
rosa_chinensis	RchiOBHm_Chr1g0366471
rosa_laevigata	RLG00000027345
rosa_multiflora	Rmu_sc0027823.1_g000001 Rmu_ssc0000250.1_g000018
rosa_roxburghii	Rroxscaffold_4G00289910
rosa_rugosa	Rorug01G0330100
rosa_samantha	Rh1AG338000 Rh1CG314600 Rh1DG331300
rosa_wichuraiana	Rw1G029930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	243
AccB7I	CCANNNNNTGG	1 cut(s)	74
AccII	CGCG	1 cut(s)	8
AclWI	GGATC	1 cut(s)	299
AfeI	AGCGCT	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	4 cut(s)	172, 282, 393, 425
AluBI	AGCT	2 cut(s)	186, 322
AluI	AGCT	2 cut(s)	186, 322
Alw26I	GTCTC	2 cut(s)	32, 414
AlwI	GGATC	1 cut(s)	299
Ama87I	CYCGRG	1 cut(s)	295
Aor51HI	AGCGCT	1 cut(s)	335
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	2 cut(s)	428, 480
ArsI	GACNNNNNNTTYG	4 cut(s)	108, 140, 392, 424
AspLEI	GCGC	2 cut(s)	10, 336
AspS9I	GGNCC	1 cut(s)	137
AsuC2I	CCSGG	2 cut(s)	296, 297
AsuHPI	GGTGA	1 cut(s)	311
AsuII	TTCGAA	1 cut(s)	114
AvaI	CYCGRG	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	440, 467
BccI	CCATC	3 cut(s)	68, 152, 257
BcnI	CCSGG	2 cut(s)	296, 297
BcoDI	GTCTC	2 cut(s)	32, 414
BfmI	CTRYAG	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	337
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	2 cut(s)	429, 481
BlsI	GCNGC	2 cut(s)	430, 482
Bme1390I	CCNGG	2 cut(s)	296, 297
BmeT110I	CYCGRG	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	2 cut(s)	139, 245
BmrFI	CCNGG	2 cut(s)	296, 297
BmrI	ACTGGG	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	62
Bpu14I	TTCGAA	1 cut(s)	114
BpuMI	CCSGG	2 cut(s)	296, 297
BsaJI	CCNNGG	2 cut(s)	294, 295
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	3 cut(s)	24, 68, 344
BseDI	CCNNGG	2 cut(s)	294, 295
BseGI	GGATG	3 cut(s)	14, 268, 289
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	3 cut(s)	24, 68, 344
BseRI	GAGGAG	2 cut(s)	20, 23
BseXI	GCAGC	2 cut(s)	440, 467
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	138
BshNI	GGYRCC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	2 cut(s)	32, 414
BsnI	GGCC	1 cut(s)	138
BsoBI	CYCGRG	1 cut(s)	295
Bsp119I	TTCGAA	1 cut(s)	114
Bsp143I	GATC	3 cut(s)	52, 93, 304
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	245
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	2 cut(s)	139, 245
BspPI	GGATC	1 cut(s)	299
BspT104I	TTCGAA	1 cut(s)	114
BspT107I	GGYRCC	1 cut(s)	243
BsrI	ACTGG	3 cut(s)	24, 68, 344
BssECI	CCNNGG	2 cut(s)	294, 295
BssMI	GATC	3 cut(s)	52, 93, 304
Bst4CI	ACNGT	3 cut(s)	220, 355, 458
Bst6I	CTCTTC	1 cut(s)	461
BstBI	TTCGAA	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	62, 324
BstDEI	CTNAG	1 cut(s)	232
BstF5I	GGATG	3 cut(s)	14, 268, 289
BstFNI	CGCG	1 cut(s)	8
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	2 cut(s)	10, 336
BstKTI	GATC	3 cut(s)	55, 96, 307
BstMAI	GTCTC	2 cut(s)	32, 414
BstMBI	GATC	3 cut(s)	52, 93, 304
BstSCI	CCNGG	2 cut(s)	294, 295
BstSFI	CTRYAG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	440, 467
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	138
BtsCI	GGATG	3 cut(s)	14, 268, 289
Cac8I	GCNNGC	2 cut(s)	62, 324
CfoI	GCGC	2 cut(s)	10, 336
Cfr13I	GGNCC	1 cut(s)	137
Cfr9I	CCCGGG	1 cut(s)	295
CseI	GACGC	1 cut(s)	14
CviJI	RGCY	8 cut(s)	23, 86, 104, 138, 186, 315, 322, 396
CviKI_1	RGCY	8 cut(s)	23, 86, 104, 138, 186, 315, 322, 396
DdeI	CTNAG	1 cut(s)	232
DpnI	GATC	3 cut(s)	54, 95, 306
DpnII	GATC	3 cut(s)	52, 93, 304
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Eco47III	AGCGCT	1 cut(s)	335
Eco88I	CYCGRG	1 cut(s)	295
FaiI	YATR	6 cut(s)	156, 182, 241, 351, 377, 508
Fnu4HI	GCNGC	2 cut(s)	429, 481
FokI	GGATG	2 cut(s)	275, 276
Fsp4HI	GCNGC	2 cut(s)	429, 481
GlaI	GCGC	2 cut(s)	9, 335
GluI	GCNGC	2 cut(s)	429, 481
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	296
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	2 cut(s)	10, 336
Hin6I	GCGC	2 cut(s)	8, 334
HinP1I	GCGC	2 cut(s)	8, 334
HinfI	GANTC	3 cut(s)	78, 340, 407
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	235, 262
Hpy188III	TCNNGA	2 cut(s)	127, 463
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	21
HpyCH4III	ACNGT	3 cut(s)	220, 355, 458
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	3 cut(s)	60, 276, 416
HpyF3I	CTNAG	1 cut(s)	232
HpySE526I	ACGT	1 cut(s)	123
HspAI	GCGC	2 cut(s)	8, 334
Kzo9I	GATC	3 cut(s)	52, 93, 304
Lsp1109I	GCAGC	2 cut(s)	440, 467
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	3 cut(s)	124, 299, 492
MalI	GATC	3 cut(s)	54, 95, 306
MboI	GATC	3 cut(s)	52, 93, 304
MboII	GAAGA	5 cut(s)	103, 160, 278, 458, 478
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	416
MnlI	CCTC	6 cut(s)	41, 44, 94, 222, 241, 480
MslI	CAYNNNNRTG	1 cut(s)	249
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	2 cut(s)	296, 297
MvnI	CGCG	1 cut(s)	8
NciI	CCSGG	2 cut(s)	296, 297
NdeII	GATC	3 cut(s)	52, 93, 304
NlaIV	GGNNCC	2 cut(s)	139, 245
NmeAIII	GCCGAG	1 cut(s)	62
NmuCI	GTSAC	3 cut(s)	124, 299, 492
NspV	TTCGAA	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	78, 340
PflMI	CCANNNNNTGG	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	430, 482
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
PspN4I	GGNNCC	2 cut(s)	139, 245
PspPI	GGNCC	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	249
SatI	GCNGC	2 cut(s)	429, 481
Sau3AI	GATC	3 cut(s)	52, 93, 304
Sau96I	GGNCC	1 cut(s)	137
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	2 cut(s)	296, 297
SetI	ASST	6 cut(s)	126, 188, 233, 273, 324, 478
SfcI	CTRYAG	1 cut(s)	216
SfuI	TTCGAA	1 cut(s)	114
SmaI	CCCGGG	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	249
Sse9I	AATT	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	294, 295
TaaI	ACNGT	3 cut(s)	220, 355, 458
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	96, 114
TasI	AATT	1 cut(s)	282
TfiI	GAWTC	2 cut(s)	78, 340
TseFI	GTSAC	3 cut(s)	124, 299, 492
TseI	GCWGC	2 cut(s)	428, 480
Tsp45I	GTSAC	3 cut(s)	124, 299, 492
TspDTI	ATGAA	1 cut(s)	278
TspMI	CCCGGG	1 cut(s)	295
Van91I	CCANNNNNTGG	1 cut(s)	74
XmaI	CCCGGG	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.