Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0009016

Physical Location & Seq

Genomic Coordinates Reverse (-)

23787789 .. 23792014

Gene Structure 4226 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1125800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCTACGACTCCTGCTTCCCAAGCCAGCCTCCTCCTCCAAAAGCAACTCAAAGATCTCTGCAAAAACCCAGTTGATGGATTCTCAGCCGGTTTGGTGAACGAAGCCAACATCTTCGAATGGAGTGTCACGATTATTGGCCCACCCGATACTTTCTATGAGGGCGGTTTCTTTAATGCCATCATGAGTTTCCCCGAGGATTATCCGTGCAACCCTCCTGTCGTGAGATTTACCTCAGAGATGTGGCACCCCAATGTTTACGCCGATGGAAAGGTTTGTATTTCAATTCTTCATCCCCCTGGTGACGATCCAAATGGCTACGAGCTTGCAACTGAGCGCTGGAATCCAGTCCATACAGTTGAGAGCATTGTTTTGAGTATAATCTCAATGCTTTCAAGTCCTAATGATGAATCTCCTGCGAATGTCGATGCTGCAAAACAATGGAGAGAAAGTAGGGAGGAGTTCCGGAAGAGAGTAGGGCGGTGTGTCAGAAAGTCTCAAGAAATGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

171

Amino Acids

19.03

Weight (kDa)

4.94

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	13 - 162	3e-51	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55380
fragaria_vesca	FvH4_7g22080
malus_domestica	MD01G1125800.v1.1 MD07G1195500.v1.1
prunus_persica	Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1
pyrus_communis	pycom01g15160
rosa_chinensis	RchiOBHm_Chr1g0366471
rosa_laevigata	RLG00000027345
rosa_multiflora	Rmu_sc0027823.1_g000001 Rmu_ssc0000250.1_g000018
rosa_roxburghii	Rroxscaffold_4G00289910
rosa_rugosa	Rorug01G0330100
rosa_samantha	Rh1AG338000 Rh1CG314600 Rh1DG331300
rosa_wichuraiana	Rw1G029930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	246
AccB7I	CCANNNNNTGG	1 cut(s)	77
AccIII	TCCGGA	1 cut(s)	465
AciI	CCGC	2 cut(s)	165, 481
AclWI	GGATC	1 cut(s)	302
AfeI	AGCGCT	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	285, 396
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
Alw26I	GTCTC	1 cut(s)	501
AlwI	GGATC	1 cut(s)	302
Ama87I	CYCGRG	1 cut(s)	194
Aor13HI	TCCGGA	1 cut(s)	465
Aor51HI	AGCGCT	1 cut(s)	338
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	431
ArsI	GACNNNNNNTTYG	2 cut(s)	111, 143
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	109, 314
AsuII	TTCGAA	1 cut(s)	117
AvaI	CYCGRG	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	3 cut(s)	71, 188, 260
BciT130I	CCWGG	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	501
BfoI	RGCGCY	1 cut(s)	340
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
Bme1390I	CCNGG	1 cut(s)	300
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	300
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	418
BmuI	ACTGGG	1 cut(s)	65
Bpu14I	TTCGAA	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	195, 298
BsaWI	WCCGGW	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	436, 466
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	2 cut(s)	71, 347
BseAI	TCCGGA	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	195, 298
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMII	CTCAG	3 cut(s)	99, 249, 324
BseNI	ACTGG	2 cut(s)	71, 347
BseRI	GAGGAG	3 cut(s)	23, 26, 473
BseXI	GCAGC	1 cut(s)	418
BshFI	GGCC	1 cut(s)	141
BshNI	GGYRCC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	90, 466
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	501
BsnI	GGCC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	194
Bsp119I	TTCGAA	1 cut(s)	117
Bsp13I	TCCGGA	1 cut(s)	465
Bsp143I	GATC	2 cut(s)	55, 307
BspACI	CCGC	2 cut(s)	165, 481
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	3 cut(s)	98, 248, 325
BspEI	TCCGGA	1 cut(s)	465
BspHI	TCATGA	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	248
BspPI	GGATC	1 cut(s)	302
BspT104I	TTCGAA	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	2 cut(s)	71, 347
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	195, 298
BssMI	GATC	2 cut(s)	55, 307
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	464
BstBI	TTCGAA	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	28, 327
BstDEI	CTNAG	3 cut(s)	85, 235, 333
BstF5I	GGATG	1 cut(s)	292
BstH2I	RGCGCY	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	2 cut(s)	58, 310
BstMAI	GTCTC	1 cut(s)	501
BstMBI	GATC	2 cut(s)	55, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	418
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	28, 327
CciI	TCATGA	1 cut(s)	183
CfoI	GCGC	1 cut(s)	339
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	140
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	8 cut(s)	5, 26, 30, 89, 107, 141, 318, 325
CviKI_1	RGCY	8 cut(s)	5, 26, 30, 89, 107, 141, 318, 325
DdeI	CTNAG	3 cut(s)	85, 235, 333
DpnI	GATC	2 cut(s)	57, 309
DpnII	GATC	2 cut(s)	55, 307
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco47III	AGCGCT	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	298
FaeI	CATG	1 cut(s)	187
FaiI	YATR	5 cut(s)	159, 185, 354, 380, 511
FatI	CATG	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	432
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	340
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	2 cut(s)	90, 466
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HinfI	GANTC	4 cut(s)	10, 81, 343, 410
HpaII	CCGG	2 cut(s)	90, 466
HphI	GGTGA	2 cut(s)	109, 314
Hpy166II	GTNNAC	2 cut(s)	100, 259
Hpy188I	TCNGA	2 cut(s)	238, 491
Hpy188III	TCNNGA	5 cut(s)	130, 184, 223, 466, 500
Hpy8I	GTNNAC	2 cut(s)	100, 259
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4V	TGCA	4 cut(s)	63, 210, 329, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	3 cut(s)	85, 235, 333
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	1 cut(s)	337
Kpn2I	TCCGGA	1 cut(s)	465
Kzo9I	GATC	2 cut(s)	55, 307
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	1 cut(s)	418
MaeIII	GTNAC	2 cut(s)	127, 302
MalI	GATC	2 cut(s)	57, 309
MboI	GATC	2 cut(s)	55, 307
MboII	GAAGA	3 cut(s)	106, 281, 481
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	4
MnlI	CCTC	8 cut(s)	41, 44, 47, 154, 190, 225, 244, 451
MroI	TCCGGA	1 cut(s)	465
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	252
MspI	CCGG	2 cut(s)	90, 466
MspR9I	CCNGG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	2 cut(s)	55, 307
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	248
NmuCI	GTSAC	2 cut(s)	127, 302
NspV	TTCGAA	1 cut(s)	117
PagI	TCATGA	1 cut(s)	183
PfeI	GAWTC	3 cut(s)	81, 343, 410
PflMI	CCANNNNNTGG	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	433
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	248
PspPI	GGNCC	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	2 cut(s)	55, 307
Sau96I	GGNCC	1 cut(s)	140
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	300
SetI	ASST	3 cut(s)	236, 276, 327
SfaNI	GCATC	1 cut(s)	418
SfuI	TTCGAA	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	498
SmoI	CTYRAG	1 cut(s)	498
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	2 cut(s)	165, 481
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	358
TaqI	TCGA	2 cut(s)	117, 426
TasI	AATT	1 cut(s)	285
TfiI	GAWTC	3 cut(s)	81, 343, 410
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseFI	GTSAC	2 cut(s)	127, 302
TseI	GCWGC	1 cut(s)	431
Tsp45I	GTSAC	2 cut(s)	127, 302
TspDTI	ATGAA	2 cut(s)	281, 423
TspGWI	ACGGA	1 cut(s)	195
Van91I	CCANNNNNTGG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.