Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009016

Physical Location & Seq

Genomic Coordinates Reverse (-)

57164700 .. 57168742

Gene Structure 4043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG338000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGACGCGCCTTCATCCCAAGCCAGTCTCCTCCTCCAAAAACAACTCAAAGATCTTTGCAAGCACCCAGTTGATGGATTCTCGGCTGGTTTGATCGACGAGGCTAATATCTTTGAATGGAACGTCACGATTATTGGCCCCCCTGATACTCTCTATGATGGTGGTTTCTTCAATGCTATCATGAGCTTCCCTAACGATTACCCTAATAACCCTCCTACTGTCAGGTTTACCTCAGAGATATGGCACCCTAATGTTTACTCGGATGGAAAGGTTTGCATTTCAATTCTTCATCCCCCGGGTGATGATCCTAATGGCTACGAGCTTGCGAGTGAGCGCTGGAATCCAGTCCATACGGTATGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

121

Amino Acids

13.39

Weight (kDa)

4.49

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	12 - 119	4.2e-35	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55380
fragaria_vesca	FvH4_7g22080
malus_domestica	MD01G1125800.v1.1 MD07G1195500.v1.1
prunus_persica	Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1
pyrus_communis	pycom01g15160
rosa_chinensis	RchiOBHm_Chr1g0366471
rosa_laevigata	RLG00000027345
rosa_multiflora	Rmu_sc0027823.1_g000001 Rmu_ssc0000250.1_g000018
rosa_roxburghii	Rroxscaffold_4G00289910
rosa_rugosa	Rorug01G0330100
rosa_samantha	Rh1AG338000 Rh1CG314600 Rh1DG331300
rosa_wichuraiana	Rw1G029930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	243
AccB7I	CCANNNNNTGG	1 cut(s)	74
AccII	CGCG	1 cut(s)	8
AclWI	GGATC	1 cut(s)	299
AfeI	AGCGCT	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	3 cut(s)	116, 172, 282
AluBI	AGCT	2 cut(s)	186, 322
AluI	AGCT	2 cut(s)	186, 322
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	299
Ama87I	CYCGRG	1 cut(s)	295
Aor51HI	AGCGCT	1 cut(s)	335
AoxI	GGCC	1 cut(s)	136
AspLEI	GCGC	2 cut(s)	10, 336
AspS9I	GGNCC	1 cut(s)	137
AsuC2I	CCSGG	2 cut(s)	296, 297
AsuHPI	GGTGA	1 cut(s)	311
AvaI	CYCGRG	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	243
BccI	CCATC	3 cut(s)	68, 152, 257
BcnI	CCSGG	2 cut(s)	296, 297
BcoDI	GTCTC	1 cut(s)	32
BfoI	RGCGCY	1 cut(s)	337
BglII	AGATCT	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	296, 297
BmeT110I	CYCGRG	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	2 cut(s)	139, 245
BmrFI	CCNGG	2 cut(s)	296, 297
BmrI	ACTGGG	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	62
BpuMI	CCSGG	2 cut(s)	296, 297
BsaJI	CCNNGG	2 cut(s)	294, 295
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	3 cut(s)	24, 68, 344
BseDI	CCNNGG	2 cut(s)	294, 295
BseGI	GGATG	3 cut(s)	14, 268, 289
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	3 cut(s)	24, 68, 344
BseRI	GAGGAG	2 cut(s)	20, 23
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	138
BshNI	GGYRCC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	138
BsoBI	CYCGRG	1 cut(s)	295
Bsp143I	GATC	3 cut(s)	52, 93, 304
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	245
BspFNI	CGCG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	139, 245
BspPI	GGATC	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	243
BsrI	ACTGG	3 cut(s)	24, 68, 344
BssECI	CCNNGG	2 cut(s)	294, 295
BssMI	GATC	3 cut(s)	52, 93, 304
Bst4CI	ACNGT	2 cut(s)	220, 355
BstC8I	GCNNGC	2 cut(s)	62, 324
BstDEI	CTNAG	1 cut(s)	232
BstF5I	GGATG	3 cut(s)	14, 268, 289
BstFNI	CGCG	1 cut(s)	8
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	2 cut(s)	10, 336
BstKTI	GATC	3 cut(s)	55, 96, 307
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	3 cut(s)	52, 93, 304
BstSCI	CCNGG	2 cut(s)	294, 295
BstUI	CGCG	1 cut(s)	8
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	138
BtsCI	GGATG	3 cut(s)	14, 268, 289
Cac8I	GCNNGC	2 cut(s)	62, 324
CciI	TCATGA	1 cut(s)	180
CfoI	GCGC	2 cut(s)	10, 336
Cfr13I	GGNCC	1 cut(s)	137
Cfr9I	CCCGGG	1 cut(s)	295
CseI	GACGC	1 cut(s)	14
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	7 cut(s)	23, 86, 104, 138, 186, 315, 322
CviKI_1	RGCY	7 cut(s)	23, 86, 104, 138, 186, 315, 322
DdeI	CTNAG	1 cut(s)	232
DpnI	GATC	3 cut(s)	54, 95, 306
DpnII	GATC	3 cut(s)	52, 93, 304
Eco47III	AGCGCT	1 cut(s)	335
Eco88I	CYCGRG	1 cut(s)	295
FaeI	CATG	1 cut(s)	184
FaiI	YATR	5 cut(s)	156, 182, 241, 351, 358
FatI	CATG	1 cut(s)	180
FokI	GGATG	2 cut(s)	275, 276
GlaI	GCGC	2 cut(s)	9, 335
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	296
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	2 cut(s)	10, 336
Hin1II	CATG	1 cut(s)	184
Hin6I	GCGC	2 cut(s)	8, 334
HinP1I	GCGC	2 cut(s)	8, 334
HinfI	GANTC	2 cut(s)	78, 340
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	228, 256
Hpy188I	TCNGA	2 cut(s)	235, 262
Hpy188III	TCNNGA	2 cut(s)	127, 181
Hpy8I	GTNNAC	2 cut(s)	228, 256
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	21
HpyCH4III	ACNGT	2 cut(s)	220, 355
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	60, 276
HpyF3I	CTNAG	1 cut(s)	232
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	184
HspAI	GCGC	2 cut(s)	8, 334
Kzo9I	GATC	3 cut(s)	52, 93, 304
LpnPI	CCDG	8 cut(s)	37, 72, 81, 156, 208, 309, 322, 357
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	3 cut(s)	54, 95, 306
MboI	GATC	3 cut(s)	52, 93, 304
MboII	GAAGA	2 cut(s)	160, 278
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	1 cut(s)	282
MnlI	CCTC	5 cut(s)	41, 44, 94, 222, 241
MseI	TTAA	1 cut(s)	364
MslI	CAYNNNNRTG	1 cut(s)	249
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	2 cut(s)	296, 297
MvnI	CGCG	1 cut(s)	8
NciI	CCSGG	2 cut(s)	296, 297
NdeII	GATC	3 cut(s)	52, 93, 304
NlaIII	CATG	1 cut(s)	184
NlaIV	GGNNCC	2 cut(s)	139, 245
NmeAIII	GCCGAG	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	124
PagI	TCATGA	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	78, 340
PflMI	CCANNNNNTGG	1 cut(s)	74
PspN4I	GGNNCC	2 cut(s)	139, 245
PspPI	GGNCC	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	364
Sau3AI	GATC	3 cut(s)	52, 93, 304
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	296, 297
SetI	ASST	6 cut(s)	126, 188, 227, 233, 273, 324
SmaI	CCCGGG	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	249
Sse9I	AATT	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	294, 295
TaaI	ACNGT	2 cut(s)	220, 355
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	96
TasI	AATT	1 cut(s)	282
TfiI	GAWTC	2 cut(s)	78, 340
Tru1I	TTAA	1 cut(s)	364
Tru9I	TTAA	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	278
TspMI	CCCGGG	1 cut(s)	295
Van91I	CCANNNNNTGG	1 cut(s)	74
XmaI	CCCGGG	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.