Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009016

Physical Location & Seq

Genomic Coordinates Reverse (-)

15119341 .. 15122567

Gene Structure 3227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g15160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCTGCGACTCCTGCTCCTGCTTCCCAAGCCAGCCTCCTTCTCCAAAAGCAACTCAAAGATCTCTGCAAAAACCCGGTTGATGGATTCTCAGCCGGTTTGGTGAACGAAGCCAACATCTTCGAATGGAGTGTCACGATTATTGGCCCACCCGACACTCTCTATGAGGGCGGTTTCTTTAATGCCATCATGAGTTTCCCCGAGGATTATCCGTGCAACCCTCCTGTCGTGAGATTTACCTCAGAGATGTGGCACCCCAATGTTTATGCCGATGGAAAGGTTTGTATTTCAATTCTTCATCCCCCTGGTGACGATCCAAATGGCTACGAGCTTGCAACTGAGCGCTGGAATCCAGTCCATACAGTTGAGAGCATTGTTTTGAGTATAATCTCAATGCTTTCAAGCCCTAATGATGAATCTCCTGCGAATGTCGATGCTGCGAAACAATGGAGAGAAAGTAGGGAGGAGTTCCGGAAGAGAGTAGGGCGGTGTGTCAGAAAGTCTCAAGAAATGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

173

Amino Acids

19.14

Weight (kDa)

4.94

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	15 - 164	2.2e-51	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55380
fragaria_vesca	FvH4_7g22080
malus_domestica	MD01G1125800.v1.1 MD07G1195500.v1.1
prunus_persica	Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1
pyrus_communis	pycom01g15160
rosa_chinensis	RchiOBHm_Chr1g0366471
rosa_laevigata	RLG00000027345
rosa_multiflora	Rmu_sc0027823.1_g000001 Rmu_ssc0000250.1_g000018
rosa_roxburghii	Rroxscaffold_4G00289910
rosa_rugosa	Rorug01G0330100
rosa_samantha	Rh1AG338000 Rh1CG314600 Rh1DG331300
rosa_wichuraiana	Rw1G029930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	252
AccIII	TCCGGA	1 cut(s)	471
AciI	CCGC	2 cut(s)	171, 487
AclWI	GGATC	1 cut(s)	308
AfeI	AGCGCT	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	2 cut(s)	291, 402
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	1 cut(s)	331
AluI	AGCT	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	507
AlwI	GGATC	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	200
Aor13HI	TCCGGA	1 cut(s)	471
Aor51HI	AGCGCT	1 cut(s)	344
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	2 cut(s)	5, 437
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	2 cut(s)	115, 320
AsuII	TTCGAA	1 cut(s)	123
AvaI	CYCGRG	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	3 cut(s)	77, 194, 266
BciT130I	CCWGG	1 cut(s)	306
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	507
BfoI	RGCGCY	1 cut(s)	346
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	2 cut(s)	6, 438
BlsI	GCNGC	2 cut(s)	7, 439
Bme1390I	CCNGG	2 cut(s)	77, 306
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	2 cut(s)	77, 306
BmsI	GCATC	1 cut(s)	424
Bpu14I	TTCGAA	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	489
BpuMI	CCSGG	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	201, 304
BsaWI	WCCGGW	1 cut(s)	471
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 442, 472
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	353
BseAI	TCCGGA	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	201, 304
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	3 cut(s)	105, 255, 330
BseNI	ACTGG	1 cut(s)	353
BseRI	GAGGAG	1 cut(s)	479
BseXI	GCAGC	1 cut(s)	424
BshFI	GGCC	1 cut(s)	147
BshNI	GGYRCC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	3 cut(s)	77, 96, 472
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	507
BsnI	GGCC	1 cut(s)	147
BsoBI	CYCGRG	1 cut(s)	200
Bsp119I	TTCGAA	1 cut(s)	123
Bsp13I	TCCGGA	1 cut(s)	471
Bsp143I	GATC	2 cut(s)	61, 313
BspACI	CCGC	2 cut(s)	171, 487
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	3 cut(s)	104, 254, 331
BspEI	TCCGGA	1 cut(s)	471
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	254
BspPI	GGATC	1 cut(s)	308
BspT104I	TTCGAA	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	252
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	201, 304
BssMI	GATC	2 cut(s)	61, 313
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	1 cut(s)	470
BstBI	TTCGAA	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	34, 333
BstDEI	CTNAG	3 cut(s)	91, 241, 339
BstF5I	GGATG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	2 cut(s)	64, 316
BstMAI	GTCTC	1 cut(s)	507
BstMBI	GATC	2 cut(s)	61, 313
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 29
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	75, 304
BstV1I	GCAGC	1 cut(s)	424
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	298
Cac8I	GCNNGC	2 cut(s)	34, 333
CciI	TCATGA	1 cut(s)	189
CfoI	GCGC	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	146
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	9 cut(s)	5, 32, 36, 95, 113, 147, 324, 331, 405
CviKI_1	RGCY	9 cut(s)	5, 32, 36, 95, 113, 147, 324, 331, 405
DdeI	CTNAG	3 cut(s)	91, 241, 339
DpnI	GATC	2 cut(s)	63, 315
DpnII	GATC	2 cut(s)	61, 313
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
Eco47III	AGCGCT	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	304
FaeI	CATG	1 cut(s)	193
FaiI	YATR	6 cut(s)	165, 191, 267, 360, 386, 517
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	2 cut(s)	6, 438
FokI	GGATG	1 cut(s)	285
Fsp4HI	GCNGC	2 cut(s)	6, 438
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	2 cut(s)	6, 438
HaeII	RGCGCY	1 cut(s)	346
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	3 cut(s)	77, 96, 472
HhaI	GCGC	1 cut(s)	345
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HinfI	GANTC	4 cut(s)	10, 87, 349, 416
HpaII	CCGG	3 cut(s)	77, 96, 472
HphI	GGTGA	2 cut(s)	115, 320
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	244, 497
Hpy188III	TCNNGA	5 cut(s)	136, 190, 229, 472, 506
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4V	TGCA	3 cut(s)	69, 216, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 29
HpyF3I	CTNAG	3 cut(s)	91, 241, 339
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	1 cut(s)	343
Kpn2I	TCCGGA	1 cut(s)	471
Kzo9I	GATC	2 cut(s)	61, 313
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	1 cut(s)	424
MaeIII	GTNAC	2 cut(s)	133, 308
MalI	GATC	2 cut(s)	63, 315
MboI	GATC	2 cut(s)	61, 313
MboII	GAAGA	3 cut(s)	112, 287, 487
MflI	RGATCY	1 cut(s)	61
MluCI	AATT	1 cut(s)	291
MlyI	GAGTC	1 cut(s)	4
MnlI	CCTC	6 cut(s)	47, 160, 196, 231, 250, 457
MroI	TCCGGA	1 cut(s)	471
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	3 cut(s)	77, 96, 472
MspR9I	CCNGG	2 cut(s)	77, 306
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	2 cut(s)	14, 29
NciI	CCSGG	1 cut(s)	77
NdeII	GATC	2 cut(s)	61, 313
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	254
NmuCI	GTSAC	2 cut(s)	133, 308
NspV	TTCGAA	1 cut(s)	123
PagI	TCATGA	1 cut(s)	189
PfeI	GAWTC	3 cut(s)	87, 349, 416
PkrI	GCNGC	2 cut(s)	7, 439
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	2 cut(s)	6, 438
Sau3AI	GATC	2 cut(s)	61, 313
Sau96I	GGNCC	1 cut(s)	146
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	77, 306
SetI	ASST	3 cut(s)	242, 282, 333
SfaNI	GCATC	1 cut(s)	424
SfuI	TTCGAA	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
Sse9I	AATT	1 cut(s)	291
SsiI	CCGC	2 cut(s)	171, 487
StyD4I	CCNGG	2 cut(s)	75, 304
TaaI	ACNGT	1 cut(s)	364
TaqI	TCGA	2 cut(s)	123, 432
TasI	AATT	1 cut(s)	291
TfiI	GAWTC	3 cut(s)	87, 349, 416
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TseFI	GTSAC	2 cut(s)	133, 308
TseI	GCWGC	2 cut(s)	5, 437
Tsp45I	GTSAC	2 cut(s)	133, 308
TspDTI	ATGAA	2 cut(s)	287, 429
TspGWI	ACGGA	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.