Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009016

Physical Location & Seq

Genomic Coordinates Reverse (-)

44879480 .. 44883733

Gene Structure 4254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0330100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGAAAAGGTTGTGGATGCAGCGGAAAGTGGAGCAGAAATTGGATCTCCAAAATTGGTTCATGAAGGTGGAGCAGGAAAATTTTCATCATCTAAAGGGAAAGGGAAGGCACATTCAAACAGTTACTTGGGCAAAATACTAGCAGTTGAAGGTTCAAGGGATGTGGCTGTTGGCCAACCAATTGCAGTAACAGCTCAGAAAGGACAACTGGAGGTAGCTCTTGAAGTTTCCAAGAAAGATGATCATTGGATTGCTGATAAAAAAAGTTACTTGGCAAAAATACTAGCACTTGAGGGTTCAAAGGATGTGCCTGTTGACCAACCAATTGCAGTAACAGTTGATGGTGTCACTGTTGGTTCAAGTATCATAAAGATCAGCCGTGCAGCTAAGTTGCTAATTCGAGAACATGGATTGGATGCATCCTCATTGAGGGCATCTGGTGCTCACGGTACACTACTCAAAGGGGATGTTTTAGCAGCTATCAAGTCAGGAATTGGATCTTCGAAAGGACCTCTGAAGGAAGCTCTTGCTAGAAAGGACCTCAAGAAAGATGATCATTGGGTTGCTGATGAAAAAAGACTTGATTGTTGGACTGCTCCATTGGATGATATAATGAAGATTAATATTGATTCATTGTGGAGGAAGTTGGATACCAAATGTGTTCTAGTTGTTTTGGTCAGAAATTCCTATGGAGTAATTCAAGCTTGTTTGTCAAGGACCACATTTTGTGCAACCCCTTTGGATGGCGAAGCATCTGCTGCACTGCTTGCCGTTGAAGTTGCAGAAACTTTGGGTCTATCTTCTTATGTGCTCGAGACTTCTAGCACAAACTTGATAACTAAAGTTCATGCTGAGAAGTTGGAGGCTGAGCACGCTGGACATCTCCAAGAGAAGCTGAAGAAGCTTAGTGAGCTCTCCAAGGAAGTTTCTTGGTCTCTTGGTTCATTATCTGCTAATGCTACTACTAGGGCTGCAACAAGAGCAATTGCTACAGGAGTGTGTAATGATGCAACCGCAAAATTCTTGCCTGGTCCGGATGTTACTCGAGAAGAGTGGTTACTTACTATGCCTGATTGTTTTATTGATCTTGTTTTCAGTGATCAGGAAGCTGTGATGAAGCAGAGAGCAGAAATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

379

Amino Acids

40.4

Weight (kDa)

6.53

Isoelectric Point (pI)

18.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E3_binding	PF02817	128 - 158	9.7e-06	e3 binding domain
RVT_3	PF13456	208 - 321	1.1e-06	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55380
fragaria_vesca	FvH4_7g22080
malus_domestica	MD01G1125800.v1.1 MD07G1195500.v1.1
prunus_persica	Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1
pyrus_communis	pycom01g15160
rosa_chinensis	RchiOBHm_Chr1g0366471
rosa_laevigata	RLG00000027345
rosa_multiflora	Rmu_sc0027823.1_g000001 Rmu_ssc0000250.1_g000018
rosa_roxburghii	Rroxscaffold_4G00289910
rosa_rugosa	Rorug01G0330100
rosa_samantha	Rh1AG338000 Rh1CG314600 Rh1DG331300
rosa_wichuraiana	Rw1G029930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	1033
AciI	CCGC	2 cut(s)	23, 1014
AclWI	GGATC	2 cut(s)	52, 505
AcoI	YGGCCR	1 cut(s)	172
AcsI	RAATTY	3 cut(s)	80, 682, 1019
AcuI	CTGAAG	2 cut(s)	536, 917
AfaI	GTAC	1 cut(s)	451
AfiI	CCNNNNNNNGG	2 cut(s)	429, 743
AgsI	TTSAA	8 cut(s)	117, 149, 156, 224, 300, 360, 701, 776
AjnI	CCWGG	1 cut(s)	1027
Alw21I	GWGCWC	4 cut(s)	445, 813, 873, 915
Alw26I	GTCTC	2 cut(s)	809, 939
AlwI	GGATC	2 cut(s)	52, 505
Ama87I	CYCGRG	2 cut(s)	812, 1044
Aor13HI	TCCGGA	1 cut(s)	1033
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	5 cut(s)	20, 383, 476, 758, 971
ApoI	RAATTY	3 cut(s)	80, 682, 1019
AseI	ATTAAT	1 cut(s)	621
Asp700I	GAANNNNTTC	1 cut(s)	82
AspS9I	GGNCC	4 cut(s)	509, 538, 717, 1031
AsuII	TTCGAA	1 cut(s)	503
AvaI	CYCGRG	2 cut(s)	812, 1044
AvaII	GGWCC	4 cut(s)	509, 538, 717, 1031
BalI	TGGCCA	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	915
BarI	GAAGNNNNNNTAC	2 cut(s)	1041, 1073
Bbv12I	GWGCWC	4 cut(s)	445, 813, 873, 915
BbvI	GCAGC	5 cut(s)	32, 395, 488, 745, 958
BccI	CCATC	2 cut(s)	335, 737
BceAI	ACGGC	2 cut(s)	363, 755
BcgI	CGANNNNNNTGC	2 cut(s)	737, 771
BciT130I	CCWGG	1 cut(s)	1029
BciVI	GTATCC	1 cut(s)	643
BclI	TGATCA	3 cut(s)	241, 553, 1099
BcoDI	GTCTC	2 cut(s)	809, 939
BfaI	CTAG	6 cut(s)	140, 284, 531, 665, 822, 966
BfmI	CTRYAG	1 cut(s)	990
BfuI	GTATCC	1 cut(s)	643
BisI	GCNGC	5 cut(s)	21, 384, 477, 759, 972
BlpI	GCTNAGC	1 cut(s)	867
BlsI	GCNGC	5 cut(s)	22, 385, 478, 760, 973
Bme1390I	CCNGG	1 cut(s)	1029
Bme18I	GGWCC	4 cut(s)	509, 538, 717, 1031
BmeT110I	CYCGRG	2 cut(s)	812, 1044
BmgT120I	GGNCC	4 cut(s)	509, 538, 717, 1031
BmrFI	CCNGG	1 cut(s)	1029
BmsI	GCATC	6 cut(s)	7, 406, 428, 443, 761, 997
BpmI	CTGGAG	1 cut(s)	230
Bpu1102I	GCTNAGC	1 cut(s)	867
Bpu14I	TTCGAA	1 cut(s)	503
BpuEI	CTTGAG	2 cut(s)	311, 527
BsaI	GGTCTC	1 cut(s)	939
BsaJI	CCNNGG	1 cut(s)	918
BsaWI	WCCGGW	1 cut(s)	1033
Bsc4I	CCNNNNNNNGG	2 cut(s)	429, 743
Bse1I	ACTGG	1 cut(s)	213
BseAI	TCCGGA	1 cut(s)	1033
BseBI	CCWGG	1 cut(s)	1029
BseDI	CCNNGG	1 cut(s)	918
BseGI	GGATG	9 cut(s)	22, 166, 310, 419, 421, 472, 610, 748, 1042
BseLI	CCNNNNNNNGG	2 cut(s)	429, 743
BseMII	CTCAG	3 cut(s)	209, 843, 858
BseNI	ACTGG	1 cut(s)	213
BseXI	GCAGC	5 cut(s)	32, 395, 488, 745, 958
BsgI	GTGCAG	2 cut(s)	402, 744
BshFI	GGCC	1 cut(s)	174
BsiHKAI	GWGCWC	4 cut(s)	445, 813, 873, 915
BsiHKCI	CYCGRG	2 cut(s)	812, 1044
BsiSI	CCGG	1 cut(s)	1034
BslI	CCNNNNNNNGG	2 cut(s)	429, 743
BsmAI	GTCTC	2 cut(s)	809, 939
BsnI	GGCC	1 cut(s)	174
Bso31I	GGTCTC	1 cut(s)	939
BsoBI	CYCGRG	2 cut(s)	812, 1044
Bsp119I	TTCGAA	1 cut(s)	503
Bsp1286I	GDGCHC	4 cut(s)	445, 813, 873, 915
Bsp13I	TCCGGA	1 cut(s)	1033
Bsp143I	GATC	7 cut(s)	44, 241, 372, 497, 553, 1084, 1099
Bsp1720I	GCTNAGC	1 cut(s)	867
BspACI	CCGC	2 cut(s)	23, 1014
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	3 cut(s)	208, 844, 859
BspEI	TCCGGA	1 cut(s)	1033
BspHI	TCATGA	1 cut(s)	61
BspPI	GGATC	2 cut(s)	52, 505
BspT104I	TTCGAA	1 cut(s)	503
BspTNI	GGTCTC	1 cut(s)	939
BsrI	ACTGG	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	918
BssMI	GATC	7 cut(s)	44, 241, 372, 497, 553, 1084, 1099
BssT1I	CCWWGG	1 cut(s)	918
Bst2UI	CCWGG	1 cut(s)	1029
Bst4CI	ACNGT	4 cut(s)	122, 337, 352, 449
Bst6I	CTCTTC	1 cut(s)	1044
BstAPI	GCANNNNNTGC	3 cut(s)	440, 758, 767
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	768, 873
BstDEI	CTNAG	5 cut(s)	195, 387, 852, 867, 905
BstENI	CCTNNNNNAGG	1 cut(s)	427
BstF5I	GGATG	9 cut(s)	22, 166, 310, 419, 421, 472, 610, 748, 1042
BstKTI	GATC	7 cut(s)	47, 244, 375, 500, 556, 1087, 1102
BstMAI	GTCTC	2 cut(s)	809, 939
BstMBI	GATC	7 cut(s)	44, 241, 372, 497, 553, 1084, 1099
BstMWI	GCNNNNNNNGC	8 cut(s)	191, 440, 758, 767, 872, 901, 910, 980
BstNI	CCWGG	1 cut(s)	1029
BstSCI	CCNGG	1 cut(s)	1027
BstSFI	CTRYAG	1 cut(s)	990
BstV1I	GCAGC	5 cut(s)	32, 395, 488, 745, 958
BstX2I	RGATCY	2 cut(s)	44, 497
BstYI	RGATCY	2 cut(s)	44, 497
BsuI	GTATCC	1 cut(s)	643
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	9 cut(s)	22, 166, 310, 419, 421, 472, 610, 748, 1042
BtsI	GCAGTG	1 cut(s)	761
BtsIMutI	CAGTG	3 cut(s)	348, 761, 1102
Cac8I	GCNNGC	2 cut(s)	768, 873
CciI	TCATGA	1 cut(s)	61
Cfr13I	GGNCC	4 cut(s)	509, 538, 717, 1031
Csp6I	GTAC	1 cut(s)	450
CspCI	CAANNNNNGTGG	2 cut(s)	144, 179
CviAII	CATG	3 cut(s)	62, 407, 848
CviQI	GTAC	1 cut(s)	450
DdeI	CTNAG	5 cut(s)	195, 387, 852, 867, 905
DpnI	GATC	7 cut(s)	46, 243, 374, 499, 555, 1086, 1101
DpnII	GATC	7 cut(s)	44, 241, 372, 497, 553, 1084, 1099
EaeI	YGGCCR	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	1044
EarI	CTCTTC	1 cut(s)	1044
Ecl136II	GAGCTC	1 cut(s)	913
Eco130I	CCWWGG	1 cut(s)	918
Eco24I	GRGCYC	1 cut(s)	915
Eco31I	GGTCTC	1 cut(s)	939
Eco47I	GGWCC	4 cut(s)	509, 538, 717, 1031
Eco53kI	GAGCTC	1 cut(s)	913
Eco57I	CTGAAG	2 cut(s)	536, 917
Eco88I	CYCGRG	2 cut(s)	812, 1044
EcoICRI	GAGCTC	1 cut(s)	913
EcoNI	CCTNNNNNAGG	1 cut(s)	427
EcoO109I	RGGNCCY	2 cut(s)	509, 538
EcoRII	CCWGG	1 cut(s)	1027
EcoT14I	CCWWGG	1 cut(s)	918
EcoT22I	ATGCAT	1 cut(s)	421
EcoT38I	GRGCYC	1 cut(s)	915
ErhI	CCWWGG	1 cut(s)	918
FaeI	CATG	3 cut(s)	65, 410, 851
FaiI	YATR	8 cut(s)	63, 368, 408, 611, 690, 807, 849, 1067
FatI	CATG	3 cut(s)	61, 406, 847
FbaI	TGATCA	3 cut(s)	241, 553, 1099
Fnu4HI	GCNGC	5 cut(s)	21, 384, 477, 759, 972
FokI	GGATG	9 cut(s)	29, 173, 317, 406, 428, 479, 617, 755, 1049
FriOI	GRGCYC	1 cut(s)	915
Fsp4HI	GCNGC	5 cut(s)	21, 384, 477, 759, 972
FspBI	CTAG	6 cut(s)	140, 284, 531, 665, 822, 966
GluI	GCNGC	5 cut(s)	21, 384, 477, 759, 972
GsuI	CTGGAG	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	1 cut(s)	1034
Hin1II	CATG	3 cut(s)	65, 410, 851
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	2 cut(s)	702, 902
HinfI	GANTC	1 cut(s)	629
HpaII	CCGG	1 cut(s)	1034
Hpy166II	GTNNAC	2 cut(s)	316, 452
Hpy188I	TCNGA	3 cut(s)	198, 516, 680
Hpy188III	TCNNGA	9 cut(s)	62, 221, 401, 489, 544, 814, 1034, 1046, 1103
Hpy8I	GTNNAC	2 cut(s)	316, 452
HpyAV	CCTTC	4 cut(s)	59, 100, 143, 511
HpyCH4III	ACNGT	4 cut(s)	122, 337, 352, 449
HpyF10VI	GCNNNNNNNGC	8 cut(s)	191, 440, 758, 767, 872, 901, 910, 980
HpyF3I	CTNAG	5 cut(s)	195, 387, 852, 867, 905
Hsp92II	CATG	3 cut(s)	65, 410, 851
Kpn2I	TCCGGA	1 cut(s)	1033
Ksp22I	TGATCA	3 cut(s)	241, 553, 1099
Kzo9I	GATC	7 cut(s)	44, 241, 372, 497, 553, 1084, 1099
LmnI	GCTCC	3 cut(s)	32, 71, 601
Lsp1109I	GCAGC	5 cut(s)	32, 395, 488, 745, 958
LweI	GCATC	6 cut(s)	7, 406, 428, 443, 761, 997
MaeI	CTAG	6 cut(s)	140, 284, 531, 665, 822, 966
MaeIII	GTNAC	7 cut(s)	122, 187, 266, 331, 346, 1039, 1056
MalI	GATC	7 cut(s)	46, 243, 374, 499, 555, 1086, 1101
MboI	GATC	7 cut(s)	44, 241, 372, 497, 553, 1084, 1099
MboII	GAAGA	5 cut(s)	492, 628, 792, 910, 1061
MfeI	CAATTG	3 cut(s)	180, 324, 984
MflI	RGATCY	2 cut(s)	44, 497
MhlI	GDGCHC	4 cut(s)	445, 813, 873, 915
MlsI	TGGCCA	1 cut(s)	174
MluNI	TGGCCA	1 cut(s)	174
MmeI	TCCRAC	3 cut(s)	569, 627, 840
MnlI	CCTC	8 cut(s)	205, 286, 423, 433, 522, 551, 633, 856
Mox20I	TGGCCA	1 cut(s)	174
Mph1103I	ATGCAT	1 cut(s)	421
MroI	TCCGGA	1 cut(s)	1033
MroXI	GAANNNNTTC	1 cut(s)	82
MscI	TGGCCA	1 cut(s)	174
MseI	TTAA	1 cut(s)	621
MslI	CAYNNNNRTG	1 cut(s)	66
Msp20I	TGGCCA	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	1 cut(s)	1034
MspR9I	CCNGG	1 cut(s)	1029
MunI	CAATTG	3 cut(s)	180, 324, 984
MvaI	CCWGG	1 cut(s)	1029
MwoI	GCNNNNNNNGC	8 cut(s)	191, 440, 758, 767, 872, 901, 910, 980
NdeII	GATC	7 cut(s)	44, 241, 372, 497, 553, 1084, 1099
NlaIII	CATG	3 cut(s)	65, 410, 851
NmuCI	GTSAC	1 cut(s)	346
NsiI	ATGCAT	1 cut(s)	421
NspV	TTCGAA	1 cut(s)	503
PaeR7I	CTCGAG	2 cut(s)	812, 1044
PagI	TCATGA	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	629
PkrI	GCNGC	5 cut(s)	22, 385, 478, 760, 973
PpuMI	RGGWCCY	2 cut(s)	509, 538
PshBI	ATTAAT	1 cut(s)	621
Psp124BI	GAGCTC	1 cut(s)	915
Psp5II	RGGWCCY	2 cut(s)	509, 538
Psp6I	CCWGG	1 cut(s)	1027
PspGI	CCWGG	1 cut(s)	1027
PspPI	GGNCC	4 cut(s)	509, 538, 717, 1031
PspPPI	RGGWCCY	2 cut(s)	509, 538
PsuI	RGATCY	2 cut(s)	44, 497
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
RseI	CAYNNNNRTG	1 cut(s)	66
SacI	GAGCTC	1 cut(s)	915
SaqAI	TTAA	1 cut(s)	621
SatI	GCNGC	5 cut(s)	21, 384, 477, 759, 972
Sau3AI	GATC	7 cut(s)	44, 241, 372, 497, 553, 1084, 1099
Sau96I	GGNCC	4 cut(s)	509, 538, 717, 1031
ScrFI	CCNGG	1 cut(s)	1029
SduI	GDGCHC	4 cut(s)	445, 813, 873, 915
SfaNI	GCATC	6 cut(s)	7, 406, 428, 443, 761, 997
SfcI	CTRYAG	1 cut(s)	990
Sfr274I	CTCGAG	2 cut(s)	812, 1044
SfuI	TTCGAA	1 cut(s)	503
SinI	GGWCC	4 cut(s)	509, 538, 717, 1031
SlaI	CTCGAG	2 cut(s)	812, 1044
SmiMI	CAYNNNNRTG	1 cut(s)	66
SmlI	CTYRAG	4 cut(s)	290, 542, 812, 1044
SmoI	CTYRAG	4 cut(s)	290, 542, 812, 1044
SsiI	CCGC	2 cut(s)	23, 1014
SspI	AATATT	1 cut(s)	625
SspMI	CTAG	6 cut(s)	140, 284, 531, 665, 822, 966
SstI	GAGCTC	1 cut(s)	915
StyD4I	CCNGG	1 cut(s)	1027
StyI	CCWWGG	1 cut(s)	918
TaaI	ACNGT	4 cut(s)	122, 337, 352, 449
TaqI	TCGA	4 cut(s)	400, 503, 813, 1045
TfiI	GAWTC	1 cut(s)	629
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	3 cut(s)	355, 768, 1102
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	5 cut(s)	20, 383, 476, 758, 971
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	9 cut(s)	50, 75, 78, 585, 621, 629, 836, 933, 1130
TspRI	CASTG	3 cut(s)	355, 768, 1102
VpaK11BI	GGWCC	4 cut(s)	509, 538, 717, 1031
VspI	ATTAAT	1 cut(s)	621
XagI	CCTNNNNNAGG	1 cut(s)	427
XapI	RAATTY	3 cut(s)	80, 682, 1019
XhoI	CTCGAG	2 cut(s)	812, 1044
XmnI	GAANNNNTTC	1 cut(s)	82
XspI	CTAG	6 cut(s)	140, 284, 531, 665, 822, 966
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.