Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000250.1

Orthogroup ID

OG0009016

Physical Location & Seq

Genomic Coordinates Reverse (-)

92007 .. 95491

Gene Structure 3485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000250.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atggcaagtgtcgccggccggcctctcattcatgagtgggtaaatggtggtaattgccgatttccgatggggtttggccctgatggaacttttgatggtggtttcttcaatgctattatgagcttccctaacgattaccctaataaccctccgacagttagttttacctcagagatatggcaccctaatgtttactcggatggaaaggtttgcatttcaattcttcatcccccgggtgacgatcctaatggctacgagctggcgagtgagcgctggaatccagtccatacagttgagagcattgtgttgagtataatatcaatgctttcaagcccaaatgatgagtctcctgcaaatgttgaagcagcgaaacaatggagagaagatagatacggtttcaggaagagagtaggtcgctgcgtgaggaagtcacaagaaatgctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

148

Amino Acids

16.52

Weight (kDa)

5.5

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55380
fragaria_vesca	FvH4_7g22080
malus_domestica	MD01G1125800.v1.1 MD07G1195500.v1.1
prunus_persica	Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1
pyrus_communis	pycom01g15160
rosa_chinensis	RchiOBHm_Chr1g0366471
rosa_laevigata	RLG00000027345
rosa_multiflora	Rmu_sc0027823.1_g000001 Rmu_ssc0000250.1_g000018
rosa_roxburghii	Rroxscaffold_4G00289910
rosa_rugosa	Rorug01G0330100
rosa_samantha	Rh1AG338000 Rh1CG314600 Rh1DG331300
rosa_wichuraiana	Rw1G029930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	180
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	1 cut(s)	16
AfeI	AGCGCT	1 cut(s)	272
AgsI	TTSAA	4 cut(s)	109, 219, 330, 362
AluBI	AGCT	2 cut(s)	123, 259
AluI	AGCT	2 cut(s)	123, 259
Alw26I	GTCTC	1 cut(s)	351
AlwI	GGATC	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	232
Aor51HI	AGCGCT	1 cut(s)	272
AoxI	GGCC	3 cut(s)	16, 20, 76
ApeKI	GCWGC	2 cut(s)	365, 417
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	77
AsuC2I	CCSGG	2 cut(s)	233, 234
AsuHPI	GGTGA	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	377, 404
BccI	CCATC	4 cut(s)	61, 77, 89, 194
BcnI	CCSGG	2 cut(s)	233, 234
BcoDI	GTCTC	1 cut(s)	351
BfoI	RGCGCY	1 cut(s)	274
BisI	GCNGC	2 cut(s)	366, 418
BlsI	GCNGC	2 cut(s)	367, 419
Bme1390I	CCNGG	2 cut(s)	233, 234
BmeT110I	CYCGRG	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	1 cut(s)	182
BmrFI	CCNGG	2 cut(s)	233, 234
BpuMI	CCSGG	2 cut(s)	233, 234
BsaJI	CCNNGG	2 cut(s)	231, 232
Bse118I	RCCGGY	2 cut(s)	14, 18
Bse1I	ACTGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	231, 232
BseGI	GGATG	2 cut(s)	205, 226
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	281
BseX3I	CGGCCG	1 cut(s)	16
BseXI	GCAGC	2 cut(s)	377, 404
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	3 cut(s)	18, 22, 78
BshNI	GGYRCC	1 cut(s)	180
BsiEI	CGRYCG	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	3 cut(s)	15, 19, 233
BsmAI	GTCTC	1 cut(s)	351
BsnI	GGCC	3 cut(s)	18, 22, 78
BsoBI	CYCGRG	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	241
BspANI	GGCC	3 cut(s)	18, 22, 78
BspCNI	CTCAG	1 cut(s)	182
BspHI	TCATGA	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	182
BspPI	GGATC	1 cut(s)	236
BspT107I	GGYRCC	1 cut(s)	180
BsrFI	RCCGGY	2 cut(s)	14, 18
BsrI	ACTGG	1 cut(s)	281
BssAI	RCCGGY	2 cut(s)	14, 18
BssECI	CCNNGG	2 cut(s)	231, 232
BssMI	GATC	1 cut(s)	241
Bst4CI	ACNGT	3 cut(s)	157, 292, 395
Bst6I	CTCTTC	1 cut(s)	398
BstC8I	GCNNGC	3 cut(s)	16, 20, 261
BstDEI	CTNAG	1 cut(s)	169
BstF5I	GGATG	2 cut(s)	205, 226
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	1 cut(s)	244
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	1 cut(s)	241
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSCI	CCNGG	2 cut(s)	231, 232
BstV1I	GCAGC	2 cut(s)	377, 404
BstZI	CGGCCG	1 cut(s)	16
BsuRI	GGCC	3 cut(s)	18, 22, 78
BtsCI	GGATG	2 cut(s)	205, 226
Cac8I	GCNNGC	3 cut(s)	16, 20, 261
CciI	TCATGA	1 cut(s)	31
CfoI	GCGC	1 cut(s)	273
Cfr10I	RCCGGY	2 cut(s)	14, 18
Cfr13I	GGNCC	1 cut(s)	77
Cfr9I	CCCGGG	1 cut(s)	232
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	7 cut(s)	18, 22, 78, 123, 252, 259, 333
CviKI_1	RGCY	7 cut(s)	18, 22, 78, 123, 252, 259, 333
DdeI	CTNAG	1 cut(s)	169
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	16
EagI	CGGCCG	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
EclXI	CGGCCG	1 cut(s)	16
Eco47III	AGCGCT	1 cut(s)	272
Eco52I	CGGCCG	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	232
FaeI	CATG	1 cut(s)	35
FaiI	YATR	6 cut(s)	33, 119, 178, 288, 314, 445
FatI	CATG	1 cut(s)	31
Fnu4HI	GCNGC	2 cut(s)	366, 418
FokI	GGATG	2 cut(s)	212, 213
FseI	GGCCGGCC	1 cut(s)	22
Fsp4HI	GCNGC	2 cut(s)	366, 418
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	2 cut(s)	366, 418
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	3 cut(s)	18, 22, 78
HapII	CCGG	3 cut(s)	15, 19, 233
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HinfI	GANTC	2 cut(s)	277, 344
HpaII	CCGG	3 cut(s)	15, 19, 233
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	4 cut(s)	66, 153, 172, 199
Hpy188III	TCNNGA	2 cut(s)	32, 400
Hpy8I	GTNNAC	1 cut(s)	193
HpyCH4III	ACNGT	3 cut(s)	157, 292, 395
HpyCH4V	TGCA	2 cut(s)	213, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	169
Hsp92II	CATG	1 cut(s)	35
HspAI	GCGC	1 cut(s)	271
KroI	GCCGGC	2 cut(s)	14, 18
KroNI	GCCGGC	2 cut(s)	16, 20
Kzo9I	GATC	1 cut(s)	241
LpnPI	CCDG	9 cut(s)	28, 32, 93, 245, 246, 259, 294, 363, 385
Lsp1109I	GCAGC	2 cut(s)	377, 404
MaeIII	GTNAC	2 cut(s)	236, 429
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	4 cut(s)	97, 215, 395, 415
MluCI	AATT	2 cut(s)	52, 219
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	4 cut(s)	33, 159, 178, 417
MroNI	GCCGGC	2 cut(s)	14, 18
MslI	CAYNNNNRTG	1 cut(s)	186
MspI	CCGG	3 cut(s)	15, 19, 233
MspR9I	CCNGG	2 cut(s)	233, 234
MwoI	GCNNNNNNNGC	1 cut(s)	11
NaeI	GCCGGC	2 cut(s)	16, 20
NciI	CCSGG	2 cut(s)	233, 234
NdeII	GATC	1 cut(s)	241
NgoMIV	GCCGGC	2 cut(s)	14, 18
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	182
NmuCI	GTSAC	2 cut(s)	236, 429
PagI	TCATGA	1 cut(s)	31
PdiI	GCCGGC	2 cut(s)	16, 20
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	2 cut(s)	367, 419
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	182
PspPI	GGNCC	1 cut(s)	77
RigI	GGCCGGCC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	186
SatI	GCNGC	2 cut(s)	366, 418
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	233, 234
SetI	ASST	5 cut(s)	125, 170, 210, 261, 415
SmaI	CCCGGG	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	52, 219
StyD4I	CCNGG	2 cut(s)	231, 232
TaaI	ACNGT	3 cut(s)	157, 292, 395
TasI	AATT	2 cut(s)	52, 219
TfiI	GAWTC	1 cut(s)	277
TseFI	GTSAC	2 cut(s)	236, 429
TseI	GCWGC	2 cut(s)	365, 417
Tsp45I	GTSAC	2 cut(s)	236, 429
TspDTI	ATGAA	2 cut(s)	20, 215
TspMI	CCCGGG	1 cut(s)	232
XmaI	CCCGGG	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.