Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009016

Physical Location & Seq

Genomic Coordinates Reverse (-)

25622188 .. 25625509

Gene Structure 3322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G232800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCTACGCAACCTGCGTCCCAAGCCAGTCTCCTCCTTCAGAAGCAACTCAAAGATCTCTGCAAACACCCAGTGGATGGATTCTCGGCTGGTTTGGTCGTTGAAGAAAACATCTTTGAATGGAGCGTCACAATTATTGGCCCACCCGATACTCTCTATGAGGGTGGTTTCTTTAATGCCGTCATGAGCTTCCCTGAGGATTACCCGAACAACCCTCCTACAGTACGGTTTACCTCAGAGATGTGGCACCCCAATGTTTACCCTGATGGGAAGGTTTGTATTTCAATTCTTCATCCCCCTGGTGACGATCCAAATGGCTACGAGCTTGCAACTGAGCGCTGGAATCCAGTCCATACGGTTGAGAGCATTGTTTTGAGTATAATATCAATGCTTTCAAGCCCTAATGATGAATCTCCTGCGAATGTTGAAGCTGCGAAAGAATGGAGAGACAACAGGGATGAGTTCAAGAAGAAAGTAGGCCGTAATGTCAGAAAGTCACAAGAAATGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

171

Amino Acids

19.09

Weight (kDa)

4.86

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55380
fragaria_vesca	FvH4_7g22080
malus_domestica	MD01G1125800.v1.1 MD07G1195500.v1.1
prunus_persica	Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1 Prupe.2G232800_v2.0.a1
pyrus_communis	pycom01g15160
rosa_chinensis	RchiOBHm_Chr1g0366471
rosa_laevigata	RLG00000027345
rosa_multiflora	Rmu_sc0027823.1_g000001 Rmu_ssc0000250.1_g000018
rosa_roxburghii	Rroxscaffold_4G00289910
rosa_rugosa	Rorug01G0330100
rosa_samantha	Rh1AG338000 Rh1CG314600 Rh1DG331300
rosa_wichuraiana	Rw1G029930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	511
Acc36I	ACCTGC	1 cut(s)	22
AccB1I	GGYRCC	1 cut(s)	246
AccB7I	CCANNNNNTGG	1 cut(s)	77
AclWI	GGATC	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	23
AdeI	CACNNNGTG	1 cut(s)	73
AfaI	GTAC	1 cut(s)	225
AfeI	AGCGCT	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	6 cut(s)	104, 119, 285, 396, 428, 466
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	3 cut(s)	189, 325, 431
AluI	AGCT	3 cut(s)	189, 325, 431
Alw26I	GTCTC	2 cut(s)	35, 441
AlwI	GGATC	1 cut(s)	302
Aor51HI	AGCGCT	1 cut(s)	338
AoxI	GGCC	2 cut(s)	139, 478
ApeKI	GCWGC	1 cut(s)	431
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	314
AxyI	CCTNAGG	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	2 cut(s)	71, 260
BceAI	ACGGC	2 cut(s)	164, 465
BciT130I	CCWGG	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	35, 441
BfmI	CTRYAG	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	340
BfuAI	ACCTGC	1 cut(s)	22
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
Bme1390I	CCNGG	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	300
BmrI	ACTGGG	1 cut(s)	65
BmuI	ACTGGG	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse1I	ACTGG	3 cut(s)	27, 71, 347
Bse21I	CCTNAGG	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	3 cut(s)	82, 292, 463
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMII	CTCAG	3 cut(s)	186, 249, 324
BseNI	ACTGG	3 cut(s)	27, 71, 347
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	418
BshFI	GGCC	2 cut(s)	141, 480
BshNI	GGYRCC	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	4
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	2 cut(s)	35, 441
BsmFI	GGGAC	1 cut(s)	4
BsnI	GGCC	2 cut(s)	141, 480
Bsp143I	GATC	2 cut(s)	55, 307
BspANI	GGCC	2 cut(s)	141, 480
BspCNI	CTCAG	3 cut(s)	187, 248, 325
BspHI	TCATGA	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	248
BspMI	ACCTGC	1 cut(s)	22
BspPI	GGATC	1 cut(s)	302
BspT107I	GGYRCC	1 cut(s)	246
BsrI	ACTGG	3 cut(s)	27, 71, 347
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	2 cut(s)	55, 307
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	3 cut(s)	223, 228, 358
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	3 cut(s)	195, 235, 333
BstF5I	GGATG	3 cut(s)	82, 292, 463
BstH2I	RGCGCY	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	2 cut(s)	58, 310
BstMAI	GTCTC	2 cut(s)	35, 441
BstMBI	GATC	2 cut(s)	55, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	418
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
Bsu36I	CCTNAGG	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	141, 480
BtsCI	GGATG	3 cut(s)	82, 292, 463
BtsIMutI	CAGTG	1 cut(s)	78
BveI	ACCTGC	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	327
CciI	TCATGA	1 cut(s)	183
CfoI	GCGC	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	140
CseI	GACGC	2 cut(s)	6, 115
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	1 cut(s)	184
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	3 cut(s)	195, 235, 333
DpnI	GATC	2 cut(s)	57, 309
DpnII	GATC	2 cut(s)	55, 307
DraIII	CACNNNGTG	1 cut(s)	73
Eco47III	AGCGCT	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	23
Eco81I	CCTNAGG	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	298
FaeI	CATG	1 cut(s)	187
FaiI	YATR	5 cut(s)	159, 185, 354, 380, 511
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	3 cut(s)	89, 279, 470
Fsp4HI	GCNGC	1 cut(s)	432
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	340
HaeIII	GGCC	2 cut(s)	141, 480
HgaI	GACGC	2 cut(s)	6, 115
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HinfI	GANTC	3 cut(s)	81, 343, 410
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	2 cut(s)	231, 259
Hpy188I	TCNGA	3 cut(s)	42, 238, 491
Hpy188III	TCNNGA	2 cut(s)	184, 466
Hpy8I	GTNNAC	2 cut(s)	231, 259
HpyAV	CCTTC	2 cut(s)	47, 265
HpyCH4III	ACNGT	3 cut(s)	223, 228, 358
HpyCH4V	TGCA	2 cut(s)	63, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	3 cut(s)	195, 235, 333
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	55, 307
LmnI	GCTCC	1 cut(s)	123
Lsp1109I	GCAGC	1 cut(s)	418
MaeIII	GTNAC	3 cut(s)	127, 302, 495
MalI	GATC	2 cut(s)	57, 309
MboI	GATC	2 cut(s)	55, 307
MboII	GAAGA	3 cut(s)	116, 281, 481
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	2 cut(s)	132, 285
MnlI	CCTC	5 cut(s)	44, 154, 190, 225, 244
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	2 cut(s)	55, 307
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	248
NmeAIII	GCCGAG	1 cut(s)	65
NmuCI	GTSAC	3 cut(s)	127, 302, 495
PagI	TCATGA	1 cut(s)	183
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	3 cut(s)	81, 343, 410
PflMI	CCANNNNNTGG	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	433
PsiI	TTATAA	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	248
PspPI	GGNCC	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	2 cut(s)	55, 307
Sau96I	GGNCC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	300
SetI	ASST	6 cut(s)	16, 191, 236, 276, 327, 433
SfcI	CTRYAG	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	252
Sse9I	AATT	2 cut(s)	132, 285
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	3 cut(s)	223, 228, 358
TasI	AATT	2 cut(s)	132, 285
TfiI	GAWTC	3 cut(s)	81, 343, 410
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	3 cut(s)	127, 302, 495
TseI	GCWGC	1 cut(s)	431
Tsp45I	GTSAC	3 cut(s)	127, 302, 495
TspDTI	ATGAA	2 cut(s)	281, 423
TspRI	CASTG	1 cut(s)	78
Van91I	CCANNNNNTGG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.