AT3G55580

regulator of chromosome condensation (RCC1) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004604
Physical Location & Seq
Forward (+)
20612693 .. 20615932
3240 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G55580.1

Sequence Viewer

Length: 1467 bp
ATGAATGGCGAGGGAAAATTGGAGACTGGTGGAACTAGCGCCGCCGCCACACCAAAAGAGGAGAAGGAAGAAGAAGAAGTAGTTTCCCAGAGAGTAGTGTACATGTGGGGTTACTTACCCGGAGCTTCACCGCAACGGTCTCCTCTGATGTCACCAGTCGAAGTAAAGATTCCTCCGGCAGTCGAAAGTTCATGGAAAGATGTCTCTGGTGGTGGATGCGGTTTCGCAATGGCTACTGCAGAGTCAGGGAAGCTAATTACATGGGGTTCTACAGATGATCTAGGTCAAAGCTACGTCACATCTGGGAAACACGGGGAGACTCCAGAGCCATTTCCTCTTCCTCCAGAGGTTTGTGTACAGAAAGCTGAAGCTGGATGGGCTCATTGTGTGGCAGTAACAGAGAATCAACAAGTTTATACATGGGGATGGAGGGAATGTATACCCACTGGGAGAGTCTTCGGACAAGTAGATGGAGATTCTTGTGAAAGAAACATATCGTTCTCGACAGAGCAAGTGAGTTCTAGTTCTCAAGGGAAAAAATCTAGTGGTGGAACGTCTTCTCAAGTTGAAGGTAGAGGTGGAGGGGAGCCAACAAAGAAAAGGAGGATTTCACCGTCAAAGCAAGCTGCTGAAAATTCATCACAGTCTGACAACATTGACCTCTCGGCATTGCCTTGCCTTGTATCGTTGGCCCCAGGAGTTAGGATTGTTAGTGTTGCTGCTGGTGGTCGTCATACTCTAGCATTATCAGATATTGGACAGGTGTGGGGTTGGGGTTATGGAGGAGAAGGACAGCTTGGATTGGGCTCTCGTGTACGTCTAGTCTCCTCTCCTCATCCTATTCCATGCATTGAGCCTTCTTCTTATGGAAAAGCCACCAGTTCTGGTGTAAACATGAGTTCAGTAGTGCAATGCGGCCGAGTTCTTGGAAGTTATGTAAAAAAAATTGCATGTGGAGGGCGACACAGTGCTGTGATTACAGATACTGGAGCGCTCCTTACATTTGGTTGGGGGCTTTATGGACAGTGTGGCCAAGGAAGTACAGATGATGAACTAAGTCCTACATGTGTGTCGTCTTTGTTGGGAATCCGAATAGAAGAAGTGGCTGCAGGTCTATGGCACACGACCTGCGCTTCATCGGATGGTGATGTTTATGCGTTTGGTGGAAACCAATTTGGCCAGTTAGGTACTGGTTGTGATCAAGCTGAGACTCTTCCAAAACTATTGGAGGCTCCAAATTTGGAAAACGTAAACGTCAAAACCATCTCCTGCGGGGCTCGCCACACAGCTGTAATCACAGATGAAGGGAGAGTATTCTGCTGGGGATGGAACAAATACGGACAGTTGGGTATAGGAGATGTGATTGACAGGAATGCACCTGCAGAGGTTAGAATCAAAGATTGCTTCCCCAAAAACATTGCATGCGGTTGGTGGCATACTCTGCTTCTAGGCCAACCAACTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

488

Amino Acids

51.41

Weight (kDa)

5.43

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 49 - 151 1.1e-13 RCC1-like domain
WD40_RLD PF25390 222 - 481 1.5e-57 RCC1-like domain
RCC1_2 PF13540 236 - 265 4.3e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 313 - 342 1.6e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 330 - 377 1.2e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 366 - 394 4.7e-07 Regulator of chromosome condensation (RCC1) repeat
Alsin_RLD PF25384 376 - 483 4.7e-08 Alsin RCC1-like domain
RCC1 PF00415 381 - 432 3.1e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 419 - 448 1e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 435 - 483 1.3e-12 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1387
Acc36I ACCTGC 3 cut(s) 1100, 1136, 1387
AccI GTMKAC 1 cut(s) 439
AciI CCGC 7 cut(s) 42, 45, 131, 219, 915, 1272, 1425
AcoI YGGCCR 3 cut(s) 916, 1030, 1177
AcsI RAATTY 2 cut(s) 634, 1237
AcuI CTGAAG 1 cut(s) 387
AfaI GTAC 5 cut(s) 101, 357, 816, 1042, 1189
AfeI AGCGCT 1 cut(s) 993
AflIII ACRYGT 2 cut(s) 102, 1064
AgsI TTSAA 1 cut(s) 569
AjnI CCWGG 1 cut(s) 694
AjuI GAANNNNNNNTTGG 2 cut(s) 780, 812
AluBI AGCT 9 cut(s) 125, 253, 291, 365, 371, 626, 796, 1205, 1289
AluI AGCT 9 cut(s) 125, 253, 291, 365, 371, 626, 796, 1205, 1289
Alw26I GTCTC 6 cut(s) 17, 144, 208, 311, 829, 1202
AlwNI CAGNNNCTG 1 cut(s) 986
Aor51HI AGCGCT 1 cut(s) 993
AoxI GGCC 5 cut(s) 690, 916, 1030, 1177, 1450
ApeKI GCWGC 3 cut(s) 626, 719, 1106
ApoI RAATTY 2 cut(s) 634, 1237
Asp700I GAANNNNTTC 1 cut(s) 556
AspLEI GCGC 3 cut(s) 41, 994, 1133
AspS9I GGNCC 1 cut(s) 691
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 4 cut(s) 120, 144, 603, 1157
BalI TGGCCA 2 cut(s) 1032, 1179
BanII GRGCYC 3 cut(s) 382, 809, 1279
BauI CACGAG 1 cut(s) 810
BbsI GAAGAC 2 cut(s) 448, 549
BbvI GCAGC 3 cut(s) 613, 706, 1093
BccI CCATC 6 cut(s) 369, 420, 464, 1136, 1271, 1320
BciT130I CCWGG 1 cut(s) 696
BclI TGATCA 1 cut(s) 1198
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 6 cut(s) 17, 144, 208, 311, 829, 1202
BfaI CTAG 7 cut(s) 36, 281, 522, 543, 740, 821, 1448
BfmI CTRYAG 4 cut(s) 237, 270, 1107, 1380
BfoI RGCGCY 2 cut(s) 42, 995
BfuAI ACCTGC 3 cut(s) 1100, 1136, 1387
BisI GCNGC 6 cut(s) 42, 45, 627, 720, 916, 1107
BlsI GCNGC 6 cut(s) 43, 46, 628, 721, 917, 1108
Bme1390I CCNGG 2 cut(s) 120, 696
BmgT120I GGNCC 1 cut(s) 691
BmiI GGNNCC 3 cut(s) 588, 693, 1233
BmrFI CCNGG 2 cut(s) 120, 696
BmrI ACTGGG 1 cut(s) 456
BmsI GCATC 1 cut(s) 206
BmuI ACTGGG 1 cut(s) 456
BpiI GAAGAC 2 cut(s) 448, 549
BpmI CTGGAG 3 cut(s) 306, 327, 1008
BpuEI CTTGAG 2 cut(s) 513, 546
BpuMI CCSGG 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 694, 1033
BsaXI ACNNNNNCTCC 2 cut(s) 421, 451
Bse1I ACTGG 7 cut(s) 31, 155, 451, 879, 991, 1180, 1195
Bse3DI GCAATG 4 cut(s) 234, 668, 917, 1416
BseBI CCWGG 1 cut(s) 696
BseDI CCNNGG 2 cut(s) 694, 1033
BseGI GGATG 6 cut(s) 221, 380, 431, 835, 1147, 1331
BseMI GCAATG 4 cut(s) 234, 668, 917, 1416
BseMII CTCAG 1 cut(s) 1197
BseNI ACTGG 7 cut(s) 31, 155, 451, 879, 991, 1180, 1195
BseRI GAGGAG 5 cut(s) 74, 132, 798, 817, 822
BseX3I CGGCCG 1 cut(s) 916
BseXI GCAGC 3 cut(s) 613, 706, 1093
BseYI CCCAGC 1 cut(s) 1320
Bsh1285I CGRYCG 1 cut(s) 919
BshFI GGCC 5 cut(s) 692, 918, 1032, 1179, 1452
BsiEI CGRYCG 1 cut(s) 919
BsiSI CCGG 2 cut(s) 120, 176
BsmAI GTCTC 6 cut(s) 17, 144, 208, 311, 829, 1202
BsmI GAATGC 1 cut(s) 1378
BsnI GGCC 5 cut(s) 692, 918, 1032, 1179, 1452
Bso31I GGTCTC 1 cut(s) 144
Bsp1286I GDGCHC 3 cut(s) 382, 809, 1279
Bsp1407I TGTACA 2 cut(s) 99, 355
Bsp143I GATC 2 cut(s) 277, 1198
BspACI CCGC 7 cut(s) 42, 45, 131, 219, 915, 1272, 1425
BspANI GGCC 5 cut(s) 692, 918, 1032, 1179, 1452
BspCNI CTCAG 1 cut(s) 1198
BspLI GGNNCC 3 cut(s) 588, 693, 1233
BspMAI CTGCAG 3 cut(s) 241, 1111, 1384
BspMI ACCTGC 3 cut(s) 1100, 1136, 1387
BspTNI GGTCTC 1 cut(s) 144
BsrDI GCAATG 4 cut(s) 234, 668, 917, 1416
BsrGI TGTACA 2 cut(s) 99, 355
BsrI ACTGG 7 cut(s) 31, 155, 451, 879, 991, 1180, 1195
BssECI CCNNGG 2 cut(s) 694, 1033
BssMI GATC 2 cut(s) 277, 1198
BssNAI GTATAC 1 cut(s) 440
BssSI CACGAG 1 cut(s) 810
BssT1I CCWWGG 1 cut(s) 1033
Bst1107I GTATAC 1 cut(s) 440
Bst2BI CACGAG 1 cut(s) 810
Bst2UI CCWGG 1 cut(s) 696
Bst4CI ACNGT 6 cut(s) 138, 615, 645, 968, 1026, 1344
Bst6I CTCTTC 2 cut(s) 342, 1218
BstAPI GCANNNNNTGC 1 cut(s) 1441
BstAUI TGTACA 2 cut(s) 99, 355
BstC8I GCNNGC 3 cut(s) 624, 1279, 1423
BstDEI CTNAG 2 cut(s) 1055, 1206
BstF5I GGATG 6 cut(s) 221, 380, 431, 835, 1147, 1331
BstH2I RGCGCY 2 cut(s) 42, 995
BstHHI GCGC 3 cut(s) 41, 994, 1133
BstKTI GATC 2 cut(s) 280, 1201
BstMAI GTCTC 6 cut(s) 17, 144, 208, 311, 829, 1202
BstMBI GATC 2 cut(s) 277, 1198
BstMCI CGRYCG 1 cut(s) 919
BstMWI GCNNNNNNNGC 3 cut(s) 377, 1278, 1441
BstNI CCWGG 1 cut(s) 696
BstNSI RCATGY 4 cut(s) 106, 954, 1068, 1425
BstSCI CCNGG 2 cut(s) 118, 694
BstSFI CTRYAG 4 cut(s) 237, 270, 1107, 1380
BstV1I GCAGC 3 cut(s) 613, 706, 1093
BstV2I GAAGAC 2 cut(s) 448, 549
BstZ17I GTATAC 1 cut(s) 440
BstZI CGGCCG 1 cut(s) 916
BsuRI GGCC 5 cut(s) 692, 918, 1032, 1179, 1452
BtsCI GGATG 6 cut(s) 221, 380, 431, 835, 1147, 1331
BtsIMutI CAGTG 3 cut(s) 444, 973, 1031
BveI ACCTGC 3 cut(s) 1100, 1136, 1387
Cac8I GCNNGC 3 cut(s) 624, 1279, 1423
CaiI CAGNNNCTG 1 cut(s) 986
CfoI GCGC 3 cut(s) 41, 994, 1133
Cfr13I GGNCC 1 cut(s) 691
Csp6I GTAC 5 cut(s) 100, 356, 815, 1041, 1188
CviAII CATG 9 cut(s) 103, 192, 261, 420, 846, 895, 951, 1065, 1422
CviQI GTAC 5 cut(s) 100, 356, 815, 1041, 1188
DdeI CTNAG 2 cut(s) 1055, 1206
DpnI GATC 2 cut(s) 279, 1200
DpnII GATC 2 cut(s) 277, 1198
EaeI YGGCCR 3 cut(s) 916, 1030, 1177
EagI CGGCCG 1 cut(s) 916
Eam1104I CTCTTC 2 cut(s) 342, 1218
EarI CTCTTC 2 cut(s) 342, 1218
EclXI CGGCCG 1 cut(s) 916
Eco130I CCWWGG 1 cut(s) 1033
Eco24I GRGCYC 3 cut(s) 382, 809, 1279
Eco31I GGTCTC 1 cut(s) 144
Eco47III AGCGCT 1 cut(s) 993
Eco52I CGGCCG 1 cut(s) 916
Eco57I CTGAAG 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 694
EcoT14I CCWWGG 1 cut(s) 1033
EcoT22I ATGCAT 1 cut(s) 851
EcoT38I GRGCYC 3 cut(s) 382, 809, 1279
ErhI CCWWGG 1 cut(s) 1033
FaeI CATG 9 cut(s) 106, 195, 264, 423, 849, 898, 954, 1068, 1425
FalI AAGNNNNNCTT 2 cut(s) 780, 812
FatI CATG 9 cut(s) 102, 191, 260, 419, 845, 894, 950, 1064, 1421
FauI CCCGC 1 cut(s) 1265
FbaI TGATCA 1 cut(s) 1198
FblI GTMKAC 1 cut(s) 439
Fnu4HI GCNGC 6 cut(s) 42, 45, 627, 720, 916, 1107
FokI GGATG 6 cut(s) 228, 387, 438, 822, 1154, 1338
FriOI GRGCYC 3 cut(s) 382, 809, 1279
Fsp4HI GCNGC 6 cut(s) 42, 45, 627, 720, 916, 1107
FspBI CTAG 7 cut(s) 36, 281, 522, 543, 740, 821, 1448
GlaI GCGC 3 cut(s) 40, 993, 1132
GluI GCNGC 6 cut(s) 42, 45, 627, 720, 916, 1107
GsaI CCCAGC 1 cut(s) 1324
GsuI CTGGAG 3 cut(s) 306, 327, 1008
HaeII RGCGCY 2 cut(s) 42, 995
HaeIII GGCC 5 cut(s) 692, 918, 1032, 1179, 1452
HapII CCGG 2 cut(s) 120, 176
HhaI GCGC 3 cut(s) 41, 994, 1133
Hin1II CATG 9 cut(s) 106, 195, 264, 423, 849, 898, 954, 1068, 1425
Hin6I GCGC 3 cut(s) 39, 992, 1131
HinP1I GCGC 3 cut(s) 39, 992, 1131
HinfI GANTC 9 cut(s) 169, 242, 319, 403, 453, 476, 1086, 1210, 1392
HpaII CCGG 2 cut(s) 120, 176
HphI GGTGA 4 cut(s) 120, 144, 603, 1157
Hpy166II GTNNAC 6 cut(s) 100, 356, 440, 815, 892, 1252
Hpy188I TCNGA 6 cut(s) 147, 461, 649, 751, 1091, 1141
Hpy188III TCNNGA 3 cut(s) 323, 344, 502
Hpy8I GTNNAC 6 cut(s) 100, 356, 440, 815, 892, 1252
HpyAV CCTTC 5 cut(s) 58, 563, 782, 867, 1298
HpyCH4III ACNGT 6 cut(s) 138, 615, 645, 968, 1026, 1344
HpyCH4IV ACGT 5 cut(s) 294, 554, 817, 1248, 1254
HpyCH4V TGCA 8 cut(s) 239, 849, 910, 950, 1109, 1376, 1382, 1421
HpyF10VI GCNNNNNNNGC 3 cut(s) 377, 1278, 1441
HpyF3I CTNAG 2 cut(s) 1055, 1206
HpySE526I ACGT 5 cut(s) 294, 554, 817, 1248, 1254
Hsp92II CATG 9 cut(s) 106, 195, 264, 423, 849, 898, 954, 1068, 1425
HspAI GCGC 3 cut(s) 39, 992, 1131
Ksp22I TGATCA 1 cut(s) 1198
Kzo9I GATC 2 cut(s) 277, 1198
LmnI GCTCC 5 cut(s) 122, 586, 989, 999, 1237
Lsp1109I GCAGC 3 cut(s) 613, 706, 1093
LweI GCATC 1 cut(s) 206
MaeI CTAG 7 cut(s) 36, 281, 522, 543, 740, 821, 1448
MaeII ACGT 5 cut(s) 294, 554, 817, 1248, 1254
MaeIII GTNAC 4 cut(s) 110, 150, 295, 394
MalI GATC 2 cut(s) 279, 1200
MboI GATC 2 cut(s) 277, 1198
MboII GAAGA 9 cut(s) 80, 83, 86, 329, 448, 549, 852, 1109, 1205
MhlI GDGCHC 3 cut(s) 382, 809, 1279
MlsI TGGCCA 2 cut(s) 1032, 1179
MluCI AATT 6 cut(s) 17, 255, 634, 945, 1172, 1237
MluNI TGGCCA 2 cut(s) 1032, 1179
MlyI GAGTC 4 cut(s) 251, 313, 462, 1204
Mox20I TGGCCA 2 cut(s) 1032, 1179
Mph1103I ATGCAT 1 cut(s) 851
MroXI GAANNNNTTC 1 cut(s) 556
MscI TGGCCA 2 cut(s) 1032, 1179
MslI CAYNNNNRTG 1 cut(s) 424
Msp20I TGGCCA 2 cut(s) 1032, 1179
MspA1I CMGCKG 1 cut(s) 1289
MspI CCGG 2 cut(s) 120, 176
MspR9I CCNGG 2 cut(s) 120, 696
Mva1269I GAATGC 1 cut(s) 1378
MvaI CCWGG 1 cut(s) 696
MwoI GCNNNNNNNGC 3 cut(s) 377, 1278, 1441
NciI CCSGG 1 cut(s) 120
NdeII GATC 2 cut(s) 277, 1198
NlaIII CATG 9 cut(s) 106, 195, 264, 423, 849, 898, 954, 1068, 1425
NlaIV GGNNCC 3 cut(s) 588, 693, 1233
NmeAIII GCCGAG 2 cut(s) 644, 944
NmuCI GTSAC 2 cut(s) 150, 295
NsiI ATGCAT 1 cut(s) 851
NspI RCATGY 4 cut(s) 106, 954, 1068, 1425
PaeI GCATGC 1 cut(s) 1425
PaqCI CACCTGC 1 cut(s) 1387
PciI ACATGT 2 cut(s) 102, 1064
PctI GAATGC 1 cut(s) 1378
PdmI GAANNNNTTC 1 cut(s) 556
PfeI GAWTC 5 cut(s) 169, 403, 476, 1086, 1392
PkrI GCNGC 6 cut(s) 43, 46, 628, 721, 917, 1108
PleI GAGTC 4 cut(s) 250, 313, 461, 1204
PpsI GAGTC 4 cut(s) 250, 313, 461, 1204
PscI ACATGT 2 cut(s) 102, 1064
Psp6I CCWGG 1 cut(s) 694
PspFI CCCAGC 1 cut(s) 1320
PspGI CCWGG 1 cut(s) 694
PspN4I GGNNCC 3 cut(s) 588, 693, 1233
PspPI GGNCC 1 cut(s) 691
PstI CTGCAG 3 cut(s) 241, 1111, 1384
PstNI CAGNNNCTG 1 cut(s) 986
PvuII CAGCTG 1 cut(s) 1289
RsaI GTAC 5 cut(s) 101, 357, 816, 1042, 1189
RsaNI GTAC 5 cut(s) 100, 356, 815, 1041, 1188
RseI CAYNNNNRTG 1 cut(s) 424
SatI GCNGC 6 cut(s) 42, 45, 627, 720, 916, 1107
Sau3AI GATC 2 cut(s) 277, 1198
Sau96I GGNCC 1 cut(s) 691
SchI GAGTC 4 cut(s) 251, 313, 462, 1204
ScrFI CCNGG 2 cut(s) 120, 696
SduI GDGCHC 3 cut(s) 382, 809, 1279
SfaNI GCATC 1 cut(s) 206
SfcI CTRYAG 4 cut(s) 237, 270, 1107, 1380
SmiMI CAYNNNNRTG 1 cut(s) 424
SmlI CTYRAG 2 cut(s) 528, 561
SmoI CTYRAG 2 cut(s) 528, 561
SphI GCATGC 1 cut(s) 1425
Sse9I AATT 6 cut(s) 17, 255, 634, 945, 1172, 1237
SsiI CCGC 7 cut(s) 42, 45, 131, 219, 915, 1272, 1425
SspMI CTAG 7 cut(s) 36, 281, 522, 543, 740, 821, 1448
StyD4I CCNGG 2 cut(s) 118, 694
StyI CCWWGG 1 cut(s) 1033
TaaI ACNGT 6 cut(s) 138, 615, 645, 968, 1026, 1344
TaiI ACGT 5 cut(s) 297, 557, 820, 1251, 1257
TaqI TCGA 3 cut(s) 159, 183, 503
TasI AATT 6 cut(s) 17, 255, 634, 945, 1172, 1237
TatI WGTACW 3 cut(s) 99, 355, 1040
TauI GCSGC 3 cut(s) 44, 47, 918
TfiI GAWTC 5 cut(s) 169, 403, 476, 1086, 1392
TscAI CASTG 3 cut(s) 451, 973, 1031
TseFI GTSAC 2 cut(s) 150, 295
TseI GCWGC 3 cut(s) 626, 719, 1106
Tsp45I GTSAC 2 cut(s) 150, 295
TspDTI ATGAA 6 cut(s) 17, 180, 627, 1065, 1125, 1317
TspGWI ACGGA 1 cut(s) 1353
TspRI CASTG 3 cut(s) 451, 973, 1031
XapI RAATTY 2 cut(s) 634, 1237
XceI RCATGY 4 cut(s) 106, 954, 1068, 1425
XcmI CCANNNNNNNNNTGG 1 cut(s) 1187
XmiI GTMKAC 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 556
XspI CTAG 7 cut(s) 36, 281, 522, 543, 740, 821, 1448
Zsp2I ATGCAT 1 cut(s) 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.