Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002709.1

Orthogroup ID

OG0004604

Physical Location & Seq

Genomic Coordinates Reverse (-)

8168 .. 10793

Gene Structure 2626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002709.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

atgaatgacggcggagatgtgaatatggaggagggcgggggcggagagaaggtggtgttgatgtggggttatcttcccggagctctgccgcaaaggtcgccgcttttgtcgccgacggttgtgcggccgggtggtgattactcctggagggatgtgtttggcggcggttgcggcttcgccatggccatttctgagtctggaaagctgattacatggggttcgacagatgatctgggtcaaagctatgtgacatctgggaagcatggggaaacaccggagccgtttcctcttccagctgaagtttctctagttaaggcagctgcaggttgggcgcattgtgttgcagttacagatactggaggagtttacacatggggatggaaagagtgtgttccctctgggaaggtcattgctgaaccatctacgagtgcaaactttgaaaaggatgtattggaaaggcagagttctttcttgacagaccaagatagccctcgctctcaaggctcacgatccactggcggaatcatgtctgctactgaagctagaggagctggagaagaaagttcaaagcgaagaagagtatcttcagcaaagcaagcagctgaaagttcatcgtctggtgatgaaactctctcagcattgccatgtcttgtgactttgaacccaggagttagaatagccaatgttgctgctggaggacgccatactctagcattgtcagatatgggacaggtgtggggatggggatatggaggtgaagggcagcttggtctgggctcacggatacgtatggtgtccacccctcatcctataccttgtatcaagtcctcttcttatgggatcatgaattcagaggaacacagtttcagagtacctggaagttatgtgaaagggattgcctgcggaggtcgacatagtgcagtgataacagctggaaggatgttcagtcattggaactataagatccgtcttccaaactacatgatatatcagagggcaagccttctgtattcaaaggttacttttgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1 RCC1_2

Protein Analysis

343

Amino Acids

36.37

Weight (kDa)

7.64

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55580
fragaria_vesca	FvH4_7g23150 FvH4_7g23150 FvH4_7g23150 FvH4_7g23150 FvH4_7g23150 FvH4_7g23150
malus_domestica	MD01G1139700.v1.1 MD07G1204100.v1.1
prunus_persica	Prupe.2G240300_v2.0.a1 Prupe.2G240300_v2.0.a1 Prupe.2G240300_v2.0.a1 Prupe.2G240300_v2.0.a1 Prupe.2G240300_v2.0.a1 Prupe.2G240300_v2.0.a1 Prupe.2G240300_v2.0.a1
pyrus_communis	pycom07g19070
rosa_chinensis	RchiOBHm_Chr1g0368491
rosa_laevigata	RLG00000027209
rosa_multiflora	Rmu_sc0002709.1_g000001 Rmu_sc0006908.1_g000018
rosa_roxburghii	Rroxscaffold_4G00288500
rosa_rugosa	Rorug01G0342000 Rorug01G0342100 Rorug01G0342200
rosa_samantha	Rh1AG349300 Rh1BG312600 Rh1CG327500 Rh1DG344100
rosa_wichuraiana	Rw0G002450 Rw1G031110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	910
AclWI	GGATC	3 cut(s)	504, 848, 958
AcoI	YGGCCR	2 cut(s)	125, 183
AcsI	RAATTY	1 cut(s)	847
AcuI	CTGAAG	3 cut(s)	318, 558, 570
AcyI	GRCGYC	1 cut(s)	700
AfaI	GTAC	1 cut(s)	873
AgsI	TTSAA	4 cut(s)	440, 567, 661, 1014
AjnI	CCWGG	3 cut(s)	143, 664, 874
AjuI	GAANNNNNNNTTGG	2 cut(s)	750, 782
Alw21I	GWGCWC	1 cut(s)	85
AlwI	GGATC	3 cut(s)	504, 848, 958
AlwNI	CAGNNNCTG	1 cut(s)	356
AoxI	GGCC	2 cut(s)	125, 183
ApeKI	GCWGC	5 cut(s)	317, 320, 599, 689, 763
ApoI	RAATTY	1 cut(s)	847
AspLEI	GCGC	1 cut(s)	334
AsuC2I	CCSGG	2 cut(s)	78, 129
AsuHPI	GGTGA	3 cut(s)	146, 632, 767
BalI	TGGCCA	1 cut(s)	185
BanII	GRGCYC	2 cut(s)	85, 779
BbsI	GAAGAC	1 cut(s)	962
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	5 cut(s)	307, 329, 611, 676, 775
BccI	CCATC	3 cut(s)	372, 427, 735
BceAI	ACGGC	2 cut(s)	25, 265
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	3 cut(s)	145, 666, 876
BciVI	GTATCC	1 cut(s)	777
BcnI	CCSGG	2 cut(s)	78, 129
BfaI	CTAG	3 cut(s)	308, 543, 710
BfmI	CTRYAG	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	314
BfuI	GTATCC	1 cut(s)	777
Bme1390I	CCNGG	5 cut(s)	78, 129, 145, 666, 876
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	5 cut(s)	78, 129, 145, 666, 876
BpiI	GAAGAC	1 cut(s)	962
BpmI	CTGGAG	4 cut(s)	166, 378, 573, 714
BpuEI	CTTGAG	1 cut(s)	483
BpuMI	CCSGG	2 cut(s)	78, 129
BsaAI	YACGTR	1 cut(s)	788
BsaHI	GRCGYC	1 cut(s)	700
BsaJI	CCNNGG	2 cut(s)	180, 664
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bse1I	ACTGG	2 cut(s)	361, 520
Bse3DI	GCAATG	2 cut(s)	408, 638
BseBI	CCWGG	3 cut(s)	145, 666, 876
BseDI	CCNNGG	2 cut(s)	180, 664
BseGI	GGATG	6 cut(s)	157, 383, 451, 746, 805, 945
BseMI	GCAATG	2 cut(s)	408, 638
BseMII	CTCAG	2 cut(s)	183, 648
BseNI	ACTGG	2 cut(s)	361, 520
BseRI	GAGGAG	3 cut(s)	44, 375, 561
BseX3I	CGGCCG	1 cut(s)	125
BseXI	GCAGC	5 cut(s)	307, 329, 611, 676, 775
BsgI	GTGCAG	1 cut(s)	939
Bsh1285I	CGRYCG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	127, 185
BsiEI	CGRYCG	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	3 cut(s)	78, 128, 275
BslFI	GGGAC	1 cut(s)	741
BsmFI	GGGAC	1 cut(s)	741
BsnI	GGCC	2 cut(s)	127, 185
Bsp1286I	GDGCHC	2 cut(s)	85, 779
Bsp143I	GATC	4 cut(s)	229, 509, 840, 963
Bsp19I	CCATGG	1 cut(s)	180
BspANI	GGCC	2 cut(s)	127, 185
BspCNI	CTCAG	2 cut(s)	184, 647
BspHI	TCATGA	1 cut(s)	843
BspLI	GGNNCC	1 cut(s)	279
BspMAI	CTGCAG	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	314
BspPI	GGATC	3 cut(s)	504, 848, 958
BsrDI	GCAATG	2 cut(s)	408, 638
BsrI	ACTGG	2 cut(s)	361, 520
BssECI	CCNNGG	2 cut(s)	180, 664
BssMI	GATC	4 cut(s)	229, 509, 840, 963
BssNI	GRCGYC	1 cut(s)	700
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	3 cut(s)	145, 666, 876
Bst4CI	ACNGT	2 cut(s)	118, 863
Bst6I	CTCTTC	3 cut(s)	294, 571, 835
BstACI	GRCGYC	1 cut(s)	700
BstBAI	YACGTR	1 cut(s)	788
BstC8I	GCNNGC	3 cut(s)	597, 901, 1000
BstDEI	CTNAG	2 cut(s)	192, 634
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	6 cut(s)	157, 383, 451, 746, 805, 945
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	4 cut(s)	232, 512, 843, 966
BstMBI	GATC	4 cut(s)	229, 509, 840, 963
BstMCI	CGRYCG	1 cut(s)	128
BstNI	CCWGG	3 cut(s)	145, 666, 876
BstSCI	CCNGG	5 cut(s)	76, 127, 143, 664, 874
BstSFI	CTRYAG	1 cut(s)	321
BstSNI	TACGTA	1 cut(s)	788
BstV1I	GCAGC	5 cut(s)	307, 329, 611, 676, 775
BstV2I	GAAGAC	1 cut(s)	962
BstX2I	RGATCY	1 cut(s)	963
BstYI	RGATCY	1 cut(s)	963
BstZI	CGGCCG	1 cut(s)	125
BsuI	GTATCC	1 cut(s)	777
BsuRI	GGCC	2 cut(s)	127, 185
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	6 cut(s)	157, 383, 451, 746, 805, 945
BtsI	GCAGTG	1 cut(s)	927
BtsIMutI	CAGTG	2 cut(s)	513, 927
BveI	ACCTGC	1 cut(s)	314
Cac8I	GCNNGC	3 cut(s)	597, 901, 1000
CaiI	CAGNNNCTG	1 cut(s)	356
CciI	TCATGA	1 cut(s)	843
CfoI	GCGC	1 cut(s)	334
CseI	GACGC	1 cut(s)	708
Csp6I	GTAC	1 cut(s)	872
CviAII	CATG	8 cut(s)	181, 213, 263, 372, 526, 645, 844, 982
CviQI	GTAC	1 cut(s)	872
DdeI	CTNAG	2 cut(s)	192, 634
DpnI	GATC	4 cut(s)	231, 511, 842, 965
DpnII	GATC	4 cut(s)	229, 509, 840, 963
EaeI	YGGCCR	2 cut(s)	125, 183
EagI	CGGCCG	1 cut(s)	125
Eam1104I	CTCTTC	3 cut(s)	294, 571, 835
EarI	CTCTTC	3 cut(s)	294, 571, 835
EciI	GGCGGA	3 cut(s)	27, 57, 534
Ecl136II	GAGCTC	1 cut(s)	83
EclXI	CGGCCG	1 cut(s)	125
Eco105I	TACGTA	1 cut(s)	788
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	2 cut(s)	85, 779
Eco52I	CGGCCG	1 cut(s)	125
Eco53kI	GAGCTC	1 cut(s)	83
Eco57I	CTGAAG	3 cut(s)	318, 558, 570
EcoICRI	GAGCTC	1 cut(s)	83
EcoRI	GAATTC	1 cut(s)	847
EcoRII	CCWGG	3 cut(s)	143, 664, 874
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	2 cut(s)	85, 779
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	8 cut(s)	184, 216, 266, 375, 529, 648, 847, 985
FalI	AAGNNNNNCTT	4 cut(s)	568, 600, 750, 782
FaqI	GGGAC	1 cut(s)	741
FatI	CATG	8 cut(s)	180, 212, 262, 371, 525, 644, 843, 981
FauI	CCCGC	1 cut(s)	29
FblI	GTMKAC	1 cut(s)	910
FokI	GGATG	6 cut(s)	164, 390, 458, 753, 792, 952
FriOI	GRGCYC	2 cut(s)	85, 779
FspBI	CTAG	3 cut(s)	308, 543, 710
GlaI	GCGC	1 cut(s)	333
GsuI	CTGGAG	4 cut(s)	166, 378, 573, 714
HaeIII	GGCC	2 cut(s)	127, 185
HapII	CCGG	3 cut(s)	78, 128, 275
HgaI	GACGC	1 cut(s)	708
HhaI	GCGC	1 cut(s)	334
Hin1I	GRCGYC	1 cut(s)	700
Hin1II	CATG	8 cut(s)	184, 216, 266, 375, 529, 648, 847, 985
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HincII	GTYRAC	1 cut(s)	911
HindII	GTYRAC	1 cut(s)	911
HinfI	GANTC	2 cut(s)	194, 522
HpaII	CCGG	3 cut(s)	78, 128, 275
HphI	GGTGA	3 cut(s)	146, 632, 767
Hpy166II	GTNNAC	3 cut(s)	367, 798, 911
Hpy188I	TCNGA	5 cut(s)	193, 721, 853, 869, 993
Hpy188III	TCNNGA	4 cut(s)	198, 472, 507, 844
Hpy8I	GTNNAC	3 cut(s)	367, 798, 911
Hpy99I	CGWCG	1 cut(s)	118
HpyAV	CCTTC	5 cut(s)	43, 397, 752, 930, 1013
HpyCH4III	ACNGT	2 cut(s)	118, 863
HpyCH4IV	ACGT	1 cut(s)	787
HpyCH4V	TGCA	5 cut(s)	323, 344, 431, 920, 1028
HpyF3I	CTNAG	2 cut(s)	192, 634
HpySE526I	ACGT	1 cut(s)	787
Hsp92I	GRCGYC	1 cut(s)	700
Hsp92II	CATG	8 cut(s)	184, 216, 266, 375, 529, 648, 847, 985
HspAI	GCGC	1 cut(s)	332
Kzo9I	GATC	4 cut(s)	229, 509, 840, 963
LmnI	GCTCC	3 cut(s)	80, 277, 548
Lsp1109I	GCAGC	5 cut(s)	307, 329, 611, 676, 775
MaeI	CTAG	3 cut(s)	308, 543, 710
MaeII	ACGT	1 cut(s)	787
MaeIII	GTNAC	4 cut(s)	247, 346, 652, 1018
MalI	GATC	4 cut(s)	231, 511, 842, 965
MboI	GATC	4 cut(s)	229, 509, 840, 963
MboII	GAAGA	8 cut(s)	65, 281, 569, 576, 585, 588, 822, 962
MflI	RGATCY	1 cut(s)	963
MhlI	GDGCHC	2 cut(s)	85, 779
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	1 cut(s)	847
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	203
Mox20I	TGGCCA	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	185
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	2 cut(s)	376, 643
Msp20I	TGGCCA	1 cut(s)	185
MspA1I	CMGCKG	4 cut(s)	296, 320, 602, 932
MspI	CCGG	3 cut(s)	78, 128, 275
MspR9I	CCNGG	5 cut(s)	78, 129, 145, 666, 876
MvaI	CCWGG	3 cut(s)	145, 666, 876
NciI	CCSGG	2 cut(s)	78, 129
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	4 cut(s)	229, 509, 840, 963
NlaIII	CATG	8 cut(s)	184, 216, 266, 375, 529, 648, 847, 985
NlaIV	GGNNCC	1 cut(s)	279
NmuCI	GTSAC	2 cut(s)	247, 652
PagI	TCATGA	1 cut(s)	843
PfeI	GAWTC	1 cut(s)	522
PfoI	TCCNGGA	2 cut(s)	76, 143
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Ppu21I	YACGTR	1 cut(s)	788
Psp124BI	GAGCTC	1 cut(s)	85
Psp6I	CCWGG	3 cut(s)	143, 664, 874
PspGI	CCWGG	3 cut(s)	143, 664, 874
PspN4I	GGNNCC	1 cut(s)	279
PstI	CTGCAG	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	963
PvuII	CAGCTG	4 cut(s)	296, 320, 602, 932
RsaI	GTAC	1 cut(s)	873
RsaNI	GTAC	1 cut(s)	872
RseI	CAYNNNNRTG	2 cut(s)	376, 643
SacI	GAGCTC	1 cut(s)	85
SalI	GTCGAC	1 cut(s)	909
SaqAI	TTAA	1 cut(s)	312
Sau3AI	GATC	4 cut(s)	229, 509, 840, 963
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	5 cut(s)	78, 129, 145, 666, 876
SduI	GDGCHC	2 cut(s)	85, 779
SfcI	CTRYAG	1 cut(s)	321
SmiMI	CAYNNNNRTG	2 cut(s)	376, 643
SmlI	CTYRAG	1 cut(s)	498
SmoI	CTYRAG	1 cut(s)	498
SnaBI	TACGTA	1 cut(s)	788
Sse9I	AATT	1 cut(s)	847
SspMI	CTAG	3 cut(s)	308, 543, 710
SstI	GAGCTC	1 cut(s)	85
StyD4I	CCNGG	5 cut(s)	76, 127, 143, 664, 874
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	118, 863
TaiI	ACGT	1 cut(s)	790
TaqI	TCGA	2 cut(s)	221, 910
TasI	AATT	1 cut(s)	847
TauI	GCSGC	5 cut(s)	91, 103, 127, 165, 174
TfiI	GAWTC	1 cut(s)	522
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	2 cut(s)	520, 927
TseFI	GTSAC	2 cut(s)	247, 652
TseI	GCWGC	5 cut(s)	317, 320, 599, 689, 763
Tsp45I	GTSAC	2 cut(s)	247, 652
TspDTI	ATGAA	4 cut(s)	17, 600, 639, 860
TspGWI	ACGGA	2 cut(s)	796, 956
TspRI	CASTG	2 cut(s)	520, 927
XapI	RAATTY	1 cut(s)	847
XmiI	GTMKAC	1 cut(s)	910
XspI	CTAG	3 cut(s)	308, 543, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.