RLG00000027209

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0004604
Physical Location & Seq
Reverse (-)
9584753 .. 9589395
4643 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027209

Sequence Viewer

Length: 1284 bp
ATGAATGACGGCGGAGATGTGAATATGGAGGAGGGAGGGGGCGGAGAGAAGGTGGTGTTGATGTGGGGTTATCTTCCCGGAGCTCTGCCGCAAAGGTCGCCGCTTTTGTCGCCGACGGTTGTGCGCCCGGGTGGTGATTACTCCTGGAGGGATGTTTTTGGCGGCGGTTGCGGCTTCGCCATGGCCATTTCTGAGTCTGGAAAGCTGATTACATGGGGTTCGACAGATGATCTGGGTCAAAGCTATGTGACATCTGGGAAGCATGGGGAAACACCGGAGCCTTTTCCTCTTCCAGCTGAAGTTTCTCTAGTTAAGGCAGCTGCAGGTTGGGCGCATTGTGTTGCAGTTACAGATACTGGAGGAGTTTACACATGGGGATGGAAAGAGTGTGTTCCCTCTGGGAAGGTCATTGCTGAACCATCTACGAGTGCAAACTTTGAAAAGGATGTATTGGAAAGGCAGAGTTCTTTCTTGACAGACCAAGTTAGCCCTCGCTCTCAAGGCTCACGATCCACTGGCGGCACCATGTCTGCTACTGAAGCTAGAGGAGCTGGAGAAGAAAGTTCAAAGCGAAGAAGAGTATCTTCAGCAAAGCAAGCAGCTGAAAGTTCATCGTCTGGTGATGAAACTCTCTCAGCATTGCCATGTCTTGTGACTTTGAACCCAGGAGTTAGAATAGCCAATGTTGCTGCTGGAGGACGCCATACTCTAGCATTGTCAGAGGAACACAGTTTCAGAGTACCTGGAAGTTATGTGAAAGGGATTGCCTGCGGAGGTCGACATAGTGCGGTGATAACAGATGCTGGAGCACTACTTACTTTCGGTTGGGGGCTTTATGGACAGTGTGGACAAGGAAGTACAGATGATGAGCTAACCCCAATATGTGTCTCTTCATTACTCGGTATCCGGATAGAGAGTGTTGCTGCAGGACTGTGGCATACTGTCTGCATATCAGCTGATGGTGATGTTTATGCATTTGGGGGGAATCAGTTTGGACAGTTGGGAACTGGAGCTGATCAAGCTGAGACTATTCCGAGACTTTTGGATGCTCCTATTCTGGAAAATGCAAACGCAAAAATTGTCTCCTGTGGAGCTCGTCATAGTTGCATTATCACTGAGGATGCAAAAGTGTTTGGCTGGGGATGGAACAAGTATGGCCAGCTTGGCTTGGGTGATGTGATCGACCGCAACATTCCAGCGCAAGTCATAATCGATGGATGTGTCCCAAAAAACGTGGCATGTGGCTGGTGGCATACCTTGCTTCTGGCCGAACTACCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

428

Amino Acids

44.6

Weight (kDa)

5.11

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 36 - 130 3.3e-13 RCC1-like domain
WD40_RLD PF25390 252 - 421 5.2e-41 RCC1-like domain
RCC1 PF00415 269 - 317 1.6e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 304 - 333 6.8e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 320 - 371 3e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 361 - 387 7.3e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 376 - 422 2e-12 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 521
AccI GTMKAC 1 cut(s) 778
AccIII TCCGGA 1 cut(s) 906
AclWI GGATC 1 cut(s) 504
AcoI YGGCCR 3 cut(s) 183, 1156, 1266
AcuI CTGAAG 3 cut(s) 318, 558, 570
AcyI GRCGYC 1 cut(s) 700
AfaI GTAC 2 cut(s) 741, 859
AgsI TTSAA 3 cut(s) 440, 567, 661
AjnI CCWGG 3 cut(s) 143, 664, 742
Alw21I GWGCWC 3 cut(s) 85, 811, 1096
Alw26I GTCTC 4 cut(s) 892, 1019, 1030, 1087
AlwI GGATC 1 cut(s) 504
AlwNI CAGNNNCTG 2 cut(s) 356, 803
Ama87I CYCGRG 1 cut(s) 127
Aor13HI TCCGGA 1 cut(s) 906
AoxI GGCC 3 cut(s) 183, 1156, 1266
ApeKI GCWGC 5 cut(s) 317, 320, 599, 689, 923
AspLEI GCGC 3 cut(s) 126, 334, 1201
AsuC2I CCSGG 3 cut(s) 78, 128, 129
AsuHPI GGTGA 5 cut(s) 146, 632, 802, 974, 1184
AvaI CYCGRG 1 cut(s) 127
BalI TGGCCA 2 cut(s) 185, 1158
BanI GGYRCC 1 cut(s) 521
BanII GRGCYC 2 cut(s) 85, 1096
Bbv12I GWGCWC 3 cut(s) 85, 811, 1096
BbvI GCAGC 5 cut(s) 307, 329, 611, 676, 910
BccI CCATC 5 cut(s) 372, 427, 953, 1137, 1208
BceAI ACGGC 1 cut(s) 25
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 3 cut(s) 145, 666, 744
BciVI GTATCC 1 cut(s) 914
BclI TGATCA 1 cut(s) 1015
BcnI CCSGG 3 cut(s) 78, 128, 129
BcoDI GTCTC 4 cut(s) 892, 1019, 1030, 1087
BfaI CTAG 3 cut(s) 308, 543, 710
BfmI CTRYAG 2 cut(s) 321, 924
BfuAI ACCTGC 1 cut(s) 314
BfuI GTATCC 1 cut(s) 914
BglI GCCNNNNNGGC 1 cut(s) 1164
Bme1390I CCNGG 6 cut(s) 78, 128, 129, 145, 666, 744
BmeT110I CYCGRG 1 cut(s) 127
BmiI GGNNCC 2 cut(s) 279, 523
BmrFI CCNGG 6 cut(s) 78, 128, 129, 145, 666, 744
BmsI GCATC 3 cut(s) 790, 1036, 1111
BpmI CTGGAG 6 cut(s) 166, 378, 573, 714, 825, 1029
BpuEI CTTGAG 1 cut(s) 483
BpuMI CCSGG 3 cut(s) 78, 128, 129
Bsa29I ATCGAT 1 cut(s) 1212
BsaHI GRCGYC 1 cut(s) 700
BsaJI CCNNGG 3 cut(s) 127, 180, 664
BsaWI WCCGGW 2 cut(s) 274, 906
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bse1I ACTGG 3 cut(s) 361, 520, 1012
Bse3DI GCAATG 2 cut(s) 408, 638
BseAI TCCGGA 1 cut(s) 906
BseBI CCWGG 3 cut(s) 145, 666, 744
BseCI ATCGAT 1 cut(s) 1212
BseDI CCNNGG 3 cut(s) 127, 180, 664
BseGI GGATG 7 cut(s) 157, 383, 451, 1051, 1126, 1148, 1223
BseMI GCAATG 2 cut(s) 408, 638
BseMII CTCAG 4 cut(s) 183, 648, 1014, 1107
BseNI ACTGG 3 cut(s) 361, 520, 1012
BseRI GAGGAG 3 cut(s) 44, 375, 561
BseXI GCAGC 5 cut(s) 307, 329, 611, 676, 910
BseYI CCCAGC 1 cut(s) 1137
Bsh1285I CGRYCG 1 cut(s) 1186
BshFI GGCC 3 cut(s) 185, 1158, 1268
BshNI GGYRCC 1 cut(s) 521
BshVI ATCGAT 1 cut(s) 1212
BsiEI CGRYCG 1 cut(s) 1186
BsiHKAI GWGCWC 3 cut(s) 85, 811, 1096
BsiHKCI CYCGRG 1 cut(s) 127
BsiSI CCGG 4 cut(s) 78, 128, 275, 907
BslFI GGGAC 1 cut(s) 1208
BsmAI GTCTC 4 cut(s) 892, 1019, 1030, 1087
BsmFI GGGAC 1 cut(s) 1208
BsnI GGCC 3 cut(s) 185, 1158, 1268
BsoBI CYCGRG 1 cut(s) 127
Bsp1286I GDGCHC 3 cut(s) 85, 811, 1096
Bsp13I TCCGGA 1 cut(s) 906
Bsp143I GATC 4 cut(s) 229, 509, 1015, 1179
Bsp19I CCATGG 1 cut(s) 180
BspANI GGCC 3 cut(s) 185, 1158, 1268
BspCNI CTCAG 4 cut(s) 184, 647, 1015, 1108
BspDI ATCGAT 1 cut(s) 1212
BspEI TCCGGA 1 cut(s) 906
BspLI GGNNCC 2 cut(s) 279, 523
BspMAI CTGCAG 2 cut(s) 325, 928
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 1 cut(s) 504
BspT107I GGYRCC 1 cut(s) 521
BsrDI GCAATG 2 cut(s) 408, 638
BsrI ACTGG 3 cut(s) 361, 520, 1012
BssECI CCNNGG 3 cut(s) 127, 180, 664
BssMI GATC 4 cut(s) 229, 509, 1015, 1179
BssNI GRCGYC 1 cut(s) 700
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 3 cut(s) 145, 666, 744
Bst4CI ACNGT 6 cut(s) 118, 731, 843, 933, 943, 999
Bst6I CTCTTC 3 cut(s) 294, 571, 895
BstACI GRCGYC 1 cut(s) 700
BstAPI GCANNNNNTGC 1 cut(s) 1258
BstC8I GCNNGC 3 cut(s) 597, 769, 1160
BstDEI CTNAG 4 cut(s) 192, 634, 1023, 1116
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 7 cut(s) 157, 383, 451, 1051, 1126, 1148, 1223
BstHHI GCGC 3 cut(s) 126, 334, 1201
BstKTI GATC 4 cut(s) 232, 512, 1018, 1182
BstMAI GTCTC 4 cut(s) 892, 1019, 1030, 1087
BstMBI GATC 4 cut(s) 229, 509, 1015, 1179
BstMCI CGRYCG 1 cut(s) 1186
BstNI CCWGG 3 cut(s) 145, 666, 744
BstNSI RCATGY 1 cut(s) 1242
BstSCI CCNGG 6 cut(s) 76, 126, 127, 143, 664, 742
BstSFI CTRYAG 2 cut(s) 321, 924
BstV1I GCAGC 5 cut(s) 307, 329, 611, 676, 910
Bsu15I ATCGAT 1 cut(s) 1212
BsuI GTATCC 1 cut(s) 914
BsuRI GGCC 3 cut(s) 185, 1158, 1268
BsuTUI ATCGAT 1 cut(s) 1212
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 7 cut(s) 157, 383, 451, 1051, 1126, 1148, 1223
BtsIMutI CAGTG 3 cut(s) 513, 848, 1113
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 3 cut(s) 597, 769, 1160
CaiI CAGNNNCTG 2 cut(s) 356, 803
CfoI GCGC 3 cut(s) 126, 334, 1201
Cfr9I CCCGGG 1 cut(s) 127
ClaI ATCGAT 1 cut(s) 1212
CseI GACGC 1 cut(s) 708
Csp6I GTAC 2 cut(s) 740, 858
CspCI CAANNNNNGTGG 2 cut(s) 1215, 1250
CviAII CATG 7 cut(s) 181, 213, 263, 372, 526, 645, 1239
CviQI GTAC 2 cut(s) 740, 858
DdeI CTNAG 4 cut(s) 192, 634, 1023, 1116
DpnI GATC 4 cut(s) 231, 511, 1017, 1181
DpnII GATC 4 cut(s) 229, 509, 1015, 1179
EaeI YGGCCR 3 cut(s) 183, 1156, 1266
Eam1104I CTCTTC 3 cut(s) 294, 571, 895
EarI CTCTTC 3 cut(s) 294, 571, 895
EciI GGCGGA 2 cut(s) 27, 57
Ecl136II GAGCTC 2 cut(s) 83, 1094
Eco130I CCWWGG 1 cut(s) 180
Eco24I GRGCYC 2 cut(s) 85, 1096
Eco53kI GAGCTC 2 cut(s) 83, 1094
Eco57I CTGAAG 3 cut(s) 318, 558, 570
Eco88I CYCGRG 1 cut(s) 127
EcoICRI GAGCTC 2 cut(s) 83, 1094
EcoRII CCWGG 3 cut(s) 143, 664, 742
EcoT14I CCWWGG 1 cut(s) 180
EcoT22I ATGCAT 1 cut(s) 976
EcoT38I GRGCYC 2 cut(s) 85, 1096
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 7 cut(s) 184, 216, 266, 375, 529, 648, 1242
FalI AAGNNNNNCTT 2 cut(s) 568, 600
FaqI GGGAC 1 cut(s) 1208
FatI CATG 7 cut(s) 180, 212, 262, 371, 525, 644, 1238
FbaI TGATCA 1 cut(s) 1015
FblI GTMKAC 1 cut(s) 778
FokI GGATG 7 cut(s) 164, 390, 458, 1058, 1133, 1155, 1230
FriOI GRGCYC 2 cut(s) 85, 1096
FspBI CTAG 3 cut(s) 308, 543, 710
GlaI GCGC 3 cut(s) 125, 333, 1200
GsaI CCCAGC 1 cut(s) 1141
GsuI CTGGAG 6 cut(s) 166, 378, 573, 714, 825, 1029
HaeIII GGCC 3 cut(s) 185, 1158, 1268
HapII CCGG 4 cut(s) 78, 128, 275, 907
HgaI GACGC 1 cut(s) 708
HhaI GCGC 3 cut(s) 126, 334, 1201
Hin1I GRCGYC 1 cut(s) 700
Hin1II CATG 7 cut(s) 184, 216, 266, 375, 529, 648, 1242
Hin6I GCGC 3 cut(s) 124, 332, 1199
HinP1I GCGC 3 cut(s) 124, 332, 1199
HincII GTYRAC 1 cut(s) 779
HindII GTYRAC 1 cut(s) 779
HinfI GANTC 2 cut(s) 194, 985
HpaII CCGG 4 cut(s) 78, 128, 275, 907
HphI GGTGA 5 cut(s) 146, 632, 802, 974, 1184
Hpy166II GTNNAC 3 cut(s) 367, 779, 848
Hpy188I TCNGA 4 cut(s) 193, 721, 737, 1035
Hpy188III TCNNGA 5 cut(s) 198, 472, 507, 907, 1058
Hpy8I GTNNAC 3 cut(s) 367, 779, 848
Hpy99I CGWCG 1 cut(s) 118
HpyAV CCTTC 2 cut(s) 43, 397
HpyCH4III ACNGT 6 cut(s) 118, 731, 843, 933, 943, 999
HpyCH4IV ACGT 1 cut(s) 1233
HpyCH4V TGCA 9 cut(s) 323, 344, 431, 926, 948, 974, 1067, 1107, 1124
HpyF3I CTNAG 4 cut(s) 192, 634, 1023, 1116
HpySE526I ACGT 1 cut(s) 1233
Hsp92I GRCGYC 1 cut(s) 700
Hsp92II CATG 7 cut(s) 184, 216, 266, 375, 529, 648, 1242
HspAI GCGC 3 cut(s) 124, 332, 1199
Kpn2I TCCGGA 1 cut(s) 906
Ksp22I TGATCA 1 cut(s) 1015
Kzo9I GATC 4 cut(s) 229, 509, 1015, 1179
LmnI GCTCC 7 cut(s) 80, 277, 548, 806, 1010, 1054, 1091
Lsp1109I GCAGC 5 cut(s) 307, 329, 611, 676, 910
LweI GCATC 3 cut(s) 790, 1036, 1111
MaeI CTAG 3 cut(s) 308, 543, 710
MaeII ACGT 1 cut(s) 1233
MaeIII GTNAC 3 cut(s) 247, 346, 652
MalI GATC 4 cut(s) 231, 511, 1017, 1181
MboI GATC 4 cut(s) 229, 509, 1015, 1179
MboII GAAGA 7 cut(s) 65, 281, 569, 576, 585, 588, 882
MhlI GDGCHC 3 cut(s) 85, 811, 1096
MlsI TGGCCA 2 cut(s) 185, 1158
MluCI AATT 1 cut(s) 1077
MluNI TGGCCA 2 cut(s) 185, 1158
MlyI GAGTC 1 cut(s) 203
Mox20I TGGCCA 2 cut(s) 185, 1158
Mph1103I ATGCAT 1 cut(s) 976
MroI TCCGGA 1 cut(s) 906
MscI TGGCCA 2 cut(s) 185, 1158
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 2 cut(s) 376, 643
Msp20I TGGCCA 2 cut(s) 185, 1158
MspA1I CMGCKG 4 cut(s) 296, 320, 602, 956
MspI CCGG 4 cut(s) 78, 128, 275, 907
MspR9I CCNGG 6 cut(s) 78, 128, 129, 145, 666, 744
MvaI CCWGG 3 cut(s) 145, 666, 744
NciI CCSGG 3 cut(s) 78, 128, 129
NcoI CCATGG 1 cut(s) 180
NdeII GATC 4 cut(s) 229, 509, 1015, 1179
NlaIII CATG 7 cut(s) 184, 216, 266, 375, 529, 648, 1242
NlaIV GGNNCC 2 cut(s) 279, 523
NmuCI GTSAC 2 cut(s) 247, 652
NsiI ATGCAT 1 cut(s) 976
NspI RCATGY 1 cut(s) 1242
PfeI GAWTC 1 cut(s) 985
PfoI TCCNGGA 2 cut(s) 76, 143
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Psp124BI GAGCTC 2 cut(s) 85, 1096
Psp6I CCWGG 3 cut(s) 143, 664, 742
PspFI CCCAGC 1 cut(s) 1137
PspGI CCWGG 3 cut(s) 143, 664, 742
PspN4I GGNNCC 2 cut(s) 279, 523
PstI CTGCAG 2 cut(s) 325, 928
PstNI CAGNNNCTG 2 cut(s) 356, 803
PvuII CAGCTG 4 cut(s) 296, 320, 602, 956
RsaI GTAC 2 cut(s) 741, 859
RsaNI GTAC 2 cut(s) 740, 858
RseI CAYNNNNRTG 2 cut(s) 376, 643
SacI GAGCTC 2 cut(s) 85, 1096
SalI GTCGAC 1 cut(s) 777
SaqAI TTAA 1 cut(s) 312
Sau3AI GATC 4 cut(s) 229, 509, 1015, 1179
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 6 cut(s) 78, 128, 129, 145, 666, 744
SduI GDGCHC 3 cut(s) 85, 811, 1096
SfaNI GCATC 3 cut(s) 790, 1036, 1111
SfcI CTRYAG 2 cut(s) 321, 924
SmaI CCCGGG 1 cut(s) 129
SmiMI CAYNNNNRTG 2 cut(s) 376, 643
SmlI CTYRAG 1 cut(s) 498
SmoI CTYRAG 1 cut(s) 498
Sse9I AATT 1 cut(s) 1077
SspMI CTAG 3 cut(s) 308, 543, 710
SstI GAGCTC 2 cut(s) 85, 1096
StyD4I CCNGG 6 cut(s) 76, 126, 127, 143, 664, 742
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 6 cut(s) 118, 731, 843, 933, 943, 999
TaiI ACGT 1 cut(s) 1236
TaqI TCGA 4 cut(s) 221, 778, 1182, 1212
TasI AATT 1 cut(s) 1077
TatI WGTACW 1 cut(s) 857
TauI GCSGC 5 cut(s) 91, 103, 165, 174, 522
TfiI GAWTC 1 cut(s) 985
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 3 cut(s) 520, 848, 1120
TseFI GTSAC 2 cut(s) 247, 652
TseI GCWGC 5 cut(s) 317, 320, 599, 689, 923
Tsp45I GTSAC 2 cut(s) 247, 652
TspDTI ATGAA 4 cut(s) 17, 600, 639, 882
TspMI CCCGGG 1 cut(s) 127
TspRI CASTG 3 cut(s) 520, 848, 1120
XceI RCATGY 1 cut(s) 1242
XmaI CCCGGG 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 778
XspI CTAG 3 cut(s) 308, 543, 710
Zsp2I ATGCAT 1 cut(s) 976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.