RchiOBHm_Chr1g0368491

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004604
Physical Location & Seq
Forward (+)
58602219 .. 58607548
5330 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59283

Sequence Viewer

Length: 1416 bp
ATGAATGACGGCGGAGATGTGAATATGGAGGAGGGAGGGGGTGGAGATAAGGTGGTGTTGATGTGGGGTTATCTTCCCGGAGCTCTGCCTCAAAGGTCGCCGCTTTTGTCGCCGACGGTTGTGCGGCCGGGTGGTGATTACTCCTGGAGGGATGTGTTTGGCGGCGGTTGCGGCTTCGCCATGGCCATTTCTGAGTCTGGAAAGCTGATTACATGGGGTTCGACAGATGATCTGGGTCAAAGCTATGTGACATCTGGGAAGCATGGGGAAACACCGGAGCCGTTTCCTCTTCCAGCTGAAGTTTCTCTAGTTAAGGCAGCTGCAGGTTGGGCGCATTGTGTTGCAGTTACAGATACTGGAGGAGTTTATACATGGGGATGGAAAGAGTGTGTTCCCTCTGGGAAGGTCATTGCTGAACCATCTACGAGTGCAAACTTTGAAAAGGATGTATTGGAAAGGCAGAGTTCTTTCTTGACAGACCAAGATAGCCCTCGCTCTCAAGGCTCACGATCCACTGGCGGAATCATGTCTGCTACTGAAGCTAGAGGAGCTGGAGAAGAAAGTTCAAAGCGAAGAAGAGTATCTTCAGCAAAGCAAGCAGCTGAAAGTTCATCGTCTGGTGATGAAACTCTCTCAGCATTGCCATGTCTTGTGACTTTGAACCCAGGAGTTAGAATAGCCAATGTTGCTGCTGGAGGACGCCATACTCTAGCATTGTCAGATATGGGACAGGTGTGGGGATGGGGATATGGAGGTGAAGGGCAGCTTGGTCTGGGCTCACGGATACGTATGGTGTCCACCCCTCATCCTATACCTTGTATCAAGTCCTCTTCTTATGGGATCATGAATTCAGAGGAACACAGTTTCAGAGTACCTGGAAGTTATGTGAAAGGGATTGCCTGCGGAGGTCGACATAGTGCAGTGATAACAGATGCTGGAGCACTACTTACTTTTGGTTGGGGGCTTTATGGACAGTGTGGACAAGGAAGTACAGATGATGAGCTAACCCCAATATGTGTCTCTTCATTACTCGGTATCCGGATAGAGAGTGTTGCTGCAGGACTGTGGCATACTGTCTGCATATCAGCTGATGGTGATGTTTATGCATTTGGGGGGAATCAGTTTGGACAGTTGGGAACTGGAGCTGATCAAGCTGAGACTATTCCGAGACTTTTGGATGCTCCTATTCTGGAAAATGCGAACGCAAAAATTGTTTCCTGTGGAGCTCGTCATAGTTGCATTATCACTGAGGATGCAAAAGTGTTTGGCTGGGGATGGAACAAGTATGGCCAGCTTGGCTTGGGTGATGTGATCGACCGCAACATTCCAGCGCAAGTCATAATCGATGGATGTGTCCCGAAAAACGTGGCATGTGGCTGGTGGCATACCTTGCTTCTGGCCGAACTACCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

471

Amino Acids

49.31

Weight (kDa)

5.19

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 35 - 130 3.9e-13 RCC1-like domain
WD40_RLD PF25390 212 - 464 1.3e-55 RCC1-like domain
RCC1_2 PF13540 226 - 255 2.3e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 243 - 309 9.2e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 313 - 361 1.9e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 348 - 377 7.7e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 364 - 415 3.4e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 405 - 431 8.2e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 420 - 466 2.3e-12 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 314
AccI GTMKAC 1 cut(s) 910
AccIII TCCGGA 1 cut(s) 1038
AciI CCGC 9 cut(s) 12, 101, 124, 162, 165, 171, 519, 903, 1318
AclWI GGATC 2 cut(s) 504, 848
AcoI YGGCCR 4 cut(s) 125, 183, 1288, 1398
AcsI RAATTY 1 cut(s) 847
AcuI CTGAAG 3 cut(s) 318, 558, 570
AcyI GRCGYC 1 cut(s) 700
AfaI GTAC 2 cut(s) 873, 991
AgsI TTSAA 3 cut(s) 440, 567, 661
AjnI CCWGG 3 cut(s) 143, 664, 874
AjuI GAANNNNNNNTTGG 2 cut(s) 750, 782
Alw21I GWGCWC 3 cut(s) 85, 943, 1228
Alw26I GTCTC 3 cut(s) 1024, 1151, 1162
AlwI GGATC 2 cut(s) 504, 848
AlwNI CAGNNNCTG 2 cut(s) 356, 935
Aor13HI TCCGGA 1 cut(s) 1038
AoxI GGCC 4 cut(s) 125, 183, 1288, 1398
ApeKI GCWGC 6 cut(s) 317, 320, 599, 689, 763, 1055
ApoI RAATTY 1 cut(s) 847
AspLEI GCGC 2 cut(s) 334, 1333
AsuC2I CCSGG 2 cut(s) 78, 129
AsuHPI GGTGA 5 cut(s) 146, 632, 767, 1106, 1316
BalI TGGCCA 2 cut(s) 185, 1290
BanII GRGCYC 3 cut(s) 85, 779, 1228
Bbv12I GWGCWC 3 cut(s) 85, 943, 1228
BbvI GCAGC 6 cut(s) 307, 329, 611, 676, 775, 1042
BccI CCATC 6 cut(s) 372, 427, 735, 1085, 1269, 1340
BceAI ACGGC 2 cut(s) 25, 265
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 3 cut(s) 145, 666, 876
BciVI GTATCC 2 cut(s) 777, 1046
BclI TGATCA 1 cut(s) 1147
BcnI CCSGG 2 cut(s) 78, 129
BcoDI GTCTC 3 cut(s) 1024, 1151, 1162
BfaI CTAG 3 cut(s) 308, 543, 710
BfmI CTRYAG 2 cut(s) 321, 1056
BfuAI ACCTGC 1 cut(s) 314
BfuI GTATCC 2 cut(s) 777, 1046
BglI GCCNNNNNGGC 1 cut(s) 1296
Bme1390I CCNGG 5 cut(s) 78, 129, 145, 666, 876
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 5 cut(s) 78, 129, 145, 666, 876
BmsI GCATC 3 cut(s) 922, 1168, 1243
BpmI CTGGAG 6 cut(s) 166, 378, 573, 714, 957, 1161
BpuEI CTTGAG 1 cut(s) 483
BpuMI CCSGG 2 cut(s) 78, 129
Bsa29I ATCGAT 1 cut(s) 1344
BsaAI YACGTR 1 cut(s) 788
BsaHI GRCGYC 1 cut(s) 700
BsaJI CCNNGG 2 cut(s) 180, 664
BsaWI WCCGGW 2 cut(s) 274, 1038
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bse1I ACTGG 3 cut(s) 361, 520, 1144
Bse3DI GCAATG 2 cut(s) 408, 638
BseAI TCCGGA 1 cut(s) 1038
BseBI CCWGG 3 cut(s) 145, 666, 876
BseCI ATCGAT 1 cut(s) 1344
BseDI CCNNGG 2 cut(s) 180, 664
BseGI GGATG 9 cut(s) 157, 383, 451, 746, 805, 1183, 1258, 1280, 1355
BseMI GCAATG 2 cut(s) 408, 638
BseMII CTCAG 4 cut(s) 183, 648, 1146, 1239
BseNI ACTGG 3 cut(s) 361, 520, 1144
BseRI GAGGAG 3 cut(s) 44, 375, 561
BseX3I CGGCCG 1 cut(s) 125
BseXI GCAGC 6 cut(s) 307, 329, 611, 676, 775, 1042
BseYI CCCAGC 1 cut(s) 1269
BsgI GTGCAG 1 cut(s) 939
Bsh1285I CGRYCG 2 cut(s) 128, 1318
BshFI GGCC 4 cut(s) 127, 185, 1290, 1400
BshVI ATCGAT 1 cut(s) 1344
BsiEI CGRYCG 2 cut(s) 128, 1318
BsiHKAI GWGCWC 3 cut(s) 85, 943, 1228
BsiSI CCGG 4 cut(s) 78, 128, 275, 1039
BslFI GGGAC 2 cut(s) 741, 1340
BsmAI GTCTC 3 cut(s) 1024, 1151, 1162
BsmFI GGGAC 2 cut(s) 741, 1340
BsnI GGCC 4 cut(s) 127, 185, 1290, 1400
Bsp1286I GDGCHC 4 cut(s) 85, 779, 943, 1228
Bsp13I TCCGGA 1 cut(s) 1038
Bsp143I GATC 5 cut(s) 229, 509, 840, 1147, 1311
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 9 cut(s) 12, 101, 124, 162, 165, 171, 519, 903, 1318
BspANI GGCC 4 cut(s) 127, 185, 1290, 1400
BspCNI CTCAG 4 cut(s) 184, 647, 1147, 1240
BspDI ATCGAT 1 cut(s) 1344
BspEI TCCGGA 1 cut(s) 1038
BspHI TCATGA 1 cut(s) 843
BspLI GGNNCC 1 cut(s) 279
BspMAI CTGCAG 2 cut(s) 325, 1060
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 2 cut(s) 504, 848
BsrDI GCAATG 2 cut(s) 408, 638
BsrI ACTGG 3 cut(s) 361, 520, 1144
BssECI CCNNGG 2 cut(s) 180, 664
BssMI GATC 5 cut(s) 229, 509, 840, 1147, 1311
BssNI GRCGYC 1 cut(s) 700
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 3 cut(s) 145, 666, 876
Bst4CI ACNGT 6 cut(s) 118, 863, 975, 1065, 1075, 1131
Bst6I CTCTTC 4 cut(s) 294, 571, 835, 1027
BstACI GRCGYC 1 cut(s) 700
BstAPI GCANNNNNTGC 1 cut(s) 1390
BstBAI YACGTR 1 cut(s) 788
BstC8I GCNNGC 3 cut(s) 597, 901, 1292
BstDEI CTNAG 4 cut(s) 192, 634, 1155, 1248
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 9 cut(s) 157, 383, 451, 746, 805, 1183, 1258, 1280, 1355
BstHHI GCGC 2 cut(s) 334, 1333
BstKTI GATC 5 cut(s) 232, 512, 843, 1150, 1314
BstMAI GTCTC 3 cut(s) 1024, 1151, 1162
BstMBI GATC 5 cut(s) 229, 509, 840, 1147, 1311
BstMCI CGRYCG 2 cut(s) 128, 1318
BstNI CCWGG 3 cut(s) 145, 666, 876
BstNSI RCATGY 1 cut(s) 1374
BstSCI CCNGG 5 cut(s) 76, 127, 143, 664, 874
BstSFI CTRYAG 2 cut(s) 321, 1056
BstSNI TACGTA 1 cut(s) 788
BstV1I GCAGC 6 cut(s) 307, 329, 611, 676, 775, 1042
BstZI CGGCCG 1 cut(s) 125
Bsu15I ATCGAT 1 cut(s) 1344
BsuI GTATCC 2 cut(s) 777, 1046
BsuRI GGCC 4 cut(s) 127, 185, 1290, 1400
BsuTUI ATCGAT 1 cut(s) 1344
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 9 cut(s) 157, 383, 451, 746, 805, 1183, 1258, 1280, 1355
BtsI GCAGTG 1 cut(s) 927
BtsIMutI CAGTG 4 cut(s) 513, 927, 980, 1245
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 3 cut(s) 597, 901, 1292
CaiI CAGNNNCTG 2 cut(s) 356, 935
CciI TCATGA 1 cut(s) 843
CfoI GCGC 2 cut(s) 334, 1333
ClaI ATCGAT 1 cut(s) 1344
CseI GACGC 1 cut(s) 708
Csp6I GTAC 2 cut(s) 872, 990
CviAII CATG 8 cut(s) 181, 213, 263, 372, 526, 645, 844, 1371
CviQI GTAC 2 cut(s) 872, 990
DdeI CTNAG 4 cut(s) 192, 634, 1155, 1248
DpnI GATC 5 cut(s) 231, 511, 842, 1149, 1313
DpnII GATC 5 cut(s) 229, 509, 840, 1147, 1311
EaeI YGGCCR 4 cut(s) 125, 183, 1288, 1398
EagI CGGCCG 1 cut(s) 125
Eam1104I CTCTTC 4 cut(s) 294, 571, 835, 1027
EarI CTCTTC 4 cut(s) 294, 571, 835, 1027
EciI GGCGGA 2 cut(s) 27, 534
Ecl136II GAGCTC 2 cut(s) 83, 1226
EclXI CGGCCG 1 cut(s) 125
Eco105I TACGTA 1 cut(s) 788
Eco130I CCWWGG 1 cut(s) 180
Eco24I GRGCYC 3 cut(s) 85, 779, 1228
Eco52I CGGCCG 1 cut(s) 125
Eco53kI GAGCTC 2 cut(s) 83, 1226
Eco57I CTGAAG 3 cut(s) 318, 558, 570
EcoICRI GAGCTC 2 cut(s) 83, 1226
EcoRI GAATTC 1 cut(s) 847
EcoRII CCWGG 3 cut(s) 143, 664, 874
EcoT14I CCWWGG 1 cut(s) 180
EcoT22I ATGCAT 1 cut(s) 1108
EcoT38I GRGCYC 3 cut(s) 85, 779, 1228
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 8 cut(s) 184, 216, 266, 375, 529, 648, 847, 1374
FalI AAGNNNNNCTT 4 cut(s) 568, 600, 750, 782
FaqI GGGAC 2 cut(s) 741, 1340
FatI CATG 8 cut(s) 180, 212, 262, 371, 525, 644, 843, 1370
FbaI TGATCA 1 cut(s) 1147
FblI GTMKAC 1 cut(s) 910
FokI GGATG 9 cut(s) 164, 390, 458, 753, 792, 1190, 1265, 1287, 1362
FriOI GRGCYC 3 cut(s) 85, 779, 1228
FspBI CTAG 3 cut(s) 308, 543, 710
GlaI GCGC 2 cut(s) 333, 1332
GsaI CCCAGC 1 cut(s) 1273
GsuI CTGGAG 6 cut(s) 166, 378, 573, 714, 957, 1161
HaeIII GGCC 4 cut(s) 127, 185, 1290, 1400
HapII CCGG 4 cut(s) 78, 128, 275, 1039
HgaI GACGC 1 cut(s) 708
HhaI GCGC 2 cut(s) 334, 1333
Hin1I GRCGYC 1 cut(s) 700
Hin1II CATG 8 cut(s) 184, 216, 266, 375, 529, 648, 847, 1374
Hin6I GCGC 2 cut(s) 332, 1331
HinP1I GCGC 2 cut(s) 332, 1331
HincII GTYRAC 1 cut(s) 911
HindII GTYRAC 1 cut(s) 911
HinfI GANTC 3 cut(s) 194, 522, 1117
HpaII CCGG 4 cut(s) 78, 128, 275, 1039
HphI GGTGA 5 cut(s) 146, 632, 767, 1106, 1316
Hpy166II GTNNAC 3 cut(s) 798, 911, 980
Hpy188I TCNGA 5 cut(s) 193, 721, 853, 869, 1167
Hpy188III TCNNGA 7 cut(s) 198, 472, 507, 844, 1039, 1190, 1357
Hpy8I GTNNAC 3 cut(s) 798, 911, 980
Hpy99I CGWCG 1 cut(s) 118
HpyAV CCTTC 2 cut(s) 397, 752
HpyCH4III ACNGT 6 cut(s) 118, 863, 975, 1065, 1075, 1131
HpyCH4IV ACGT 2 cut(s) 787, 1365
HpyCH4V TGCA 9 cut(s) 323, 344, 431, 920, 1058, 1080, 1106, 1239, 1256
HpyF3I CTNAG 4 cut(s) 192, 634, 1155, 1248
HpySE526I ACGT 2 cut(s) 787, 1365
Hsp92I GRCGYC 1 cut(s) 700
Hsp92II CATG 8 cut(s) 184, 216, 266, 375, 529, 648, 847, 1374
HspAI GCGC 2 cut(s) 332, 1331
Kpn2I TCCGGA 1 cut(s) 1038
Ksp22I TGATCA 1 cut(s) 1147
Kzo9I GATC 5 cut(s) 229, 509, 840, 1147, 1311
LmnI GCTCC 7 cut(s) 80, 277, 548, 938, 1142, 1186, 1223
Lsp1109I GCAGC 6 cut(s) 307, 329, 611, 676, 775, 1042
LweI GCATC 3 cut(s) 922, 1168, 1243
MaeI CTAG 3 cut(s) 308, 543, 710
MaeII ACGT 2 cut(s) 787, 1365
MaeIII GTNAC 3 cut(s) 247, 346, 652
MalI GATC 5 cut(s) 231, 511, 842, 1149, 1313
MboI GATC 5 cut(s) 229, 509, 840, 1147, 1311
MboII GAAGA 8 cut(s) 65, 281, 569, 576, 585, 588, 822, 1014
MhlI GDGCHC 4 cut(s) 85, 779, 943, 1228
MlsI TGGCCA 2 cut(s) 185, 1290
MluCI AATT 2 cut(s) 847, 1209
MluNI TGGCCA 2 cut(s) 185, 1290
MlyI GAGTC 1 cut(s) 203
Mox20I TGGCCA 2 cut(s) 185, 1290
Mph1103I ATGCAT 1 cut(s) 1108
MroI TCCGGA 1 cut(s) 1038
MscI TGGCCA 2 cut(s) 185, 1290
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 2 cut(s) 376, 643
Msp20I TGGCCA 2 cut(s) 185, 1290
MspA1I CMGCKG 4 cut(s) 296, 320, 602, 1088
MspI CCGG 4 cut(s) 78, 128, 275, 1039
MspR9I CCNGG 5 cut(s) 78, 129, 145, 666, 876
MvaI CCWGG 3 cut(s) 145, 666, 876
NciI CCSGG 2 cut(s) 78, 129
NcoI CCATGG 1 cut(s) 180
NdeII GATC 5 cut(s) 229, 509, 840, 1147, 1311
NlaIII CATG 8 cut(s) 184, 216, 266, 375, 529, 648, 847, 1374
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 2 cut(s) 247, 652
NsiI ATGCAT 1 cut(s) 1108
NspI RCATGY 1 cut(s) 1374
PagI TCATGA 1 cut(s) 843
PfeI GAWTC 2 cut(s) 522, 1117
PfoI TCCNGGA 2 cut(s) 76, 143
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Ppu21I YACGTR 1 cut(s) 788
Psp124BI GAGCTC 2 cut(s) 85, 1228
Psp6I CCWGG 3 cut(s) 143, 664, 874
PspFI CCCAGC 1 cut(s) 1269
PspGI CCWGG 3 cut(s) 143, 664, 874
PspN4I GGNNCC 1 cut(s) 279
PstI CTGCAG 2 cut(s) 325, 1060
PstNI CAGNNNCTG 2 cut(s) 356, 935
PvuII CAGCTG 4 cut(s) 296, 320, 602, 1088
RsaI GTAC 2 cut(s) 873, 991
RsaNI GTAC 2 cut(s) 872, 990
RseI CAYNNNNRTG 2 cut(s) 376, 643
SacI GAGCTC 2 cut(s) 85, 1228
SalI GTCGAC 1 cut(s) 909
SaqAI TTAA 1 cut(s) 312
Sau3AI GATC 5 cut(s) 229, 509, 840, 1147, 1311
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 5 cut(s) 78, 129, 145, 666, 876
SduI GDGCHC 4 cut(s) 85, 779, 943, 1228
SfaNI GCATC 3 cut(s) 922, 1168, 1243
SfcI CTRYAG 2 cut(s) 321, 1056
SmiMI CAYNNNNRTG 2 cut(s) 376, 643
SmlI CTYRAG 1 cut(s) 498
SmoI CTYRAG 1 cut(s) 498
SnaBI TACGTA 1 cut(s) 788
Sse9I AATT 2 cut(s) 847, 1209
SsiI CCGC 9 cut(s) 12, 101, 124, 162, 165, 171, 519, 903, 1318
SspMI CTAG 3 cut(s) 308, 543, 710
SstI GAGCTC 2 cut(s) 85, 1228
StyD4I CCNGG 5 cut(s) 76, 127, 143, 664, 874
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 6 cut(s) 118, 863, 975, 1065, 1075, 1131
TaiI ACGT 2 cut(s) 790, 1368
TaqI TCGA 4 cut(s) 221, 910, 1314, 1344
TasI AATT 2 cut(s) 847, 1209
TatI WGTACW 1 cut(s) 989
TauI GCSGC 4 cut(s) 103, 127, 165, 174
TfiI GAWTC 2 cut(s) 522, 1117
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 4 cut(s) 520, 927, 980, 1252
TseFI GTSAC 2 cut(s) 247, 652
TseI GCWGC 6 cut(s) 317, 320, 599, 689, 763, 1055
Tsp45I GTSAC 2 cut(s) 247, 652
TspDTI ATGAA 5 cut(s) 17, 600, 639, 860, 1014
TspGWI ACGGA 1 cut(s) 796
TspRI CASTG 4 cut(s) 520, 927, 980, 1252
XapI RAATTY 1 cut(s) 847
XceI RCATGY 1 cut(s) 1374
XmiI GTMKAC 1 cut(s) 910
XspI CTAG 3 cut(s) 308, 543, 710
Zsp2I ATGCAT 1 cut(s) 1108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.