Rh1AG349300

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004604
Physical Location & Seq
Forward (+)
58615882 .. 58620527
4646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG349300.1

Sequence Viewer

Length: 1209 bp
ATGAATGACGGCGGAGATGTGAATATGGAGGAGGGAGGGGGCGGAGAGAAGGTGGTGTTGATGTGGGGTTATCTTCCCGGAGCTCTGCCGCAAAGGTCGCCGCTTTTGTCGCCGACGGTTGTGCGGCCGGGTGGTGGTTACTCCTGGAGGGATGTGTTTGGCGGCGGTTGCGGCTTCGCCATGGCCATTTCTGAGTCTGGAAAGCTGATTACATGGGGTTCGACAGATGATCTGGGTCAAAGCTATGTGACATCTGGGAAGCATGGGGAAACACCGGAGCCTTTTCCTCTTCCAGCTGAAGTTTCTCTAGTTAAGGCAGCTGCAGGTTGGGCGCATTGTGTTGCAGTTACAGATACTGGAGGAGTTTACACATGGGGATGGAAAGAGTGTGTTCCCTCTGGGAAGGTCATTGCTGAACCATCTACGAGTGCAAACTTTGAAAAGGATGTATTGGAAAGGCAGAGTTCTTTCTTGACAGACCAAGATAGCCCTCGCTCTCAAGGCTCACGATCCACTGGCGGAATCATGTCTGCTACTGAAGCTAGAGGAGCTGGAGAAGAAAGTTCAAAGCGAAGAAGAGTATCTTCAGCAAAGCAAGCAGCTGAAAGTTCATCGTCTGGTGATGAAACTCTCTCAGCATTGCCATGTCTTGTGACTTTGAACCCAGGAGTTAGAATAGCCAATGTTGCTGCTGGAGGACGCCATACTCTAGCATTGTCAGATGCTGGAGCACTACTTACTTTTGGTTGGGGGCTTTATGGACAGTGTGGACAAGGAAGTACAGATGATGAGCTAACCCCAATATGTGTCTCTTCATTACTCGGTATCCGGATAGAGAGTGTTGCTGCAGGACTGTGGCATACTGTCTGCATATCAGCTGATGGTGATGTTTATGCATTTGGGGGGAATCAGTTTGGACAGTTGGGAACTGGAGCTGATCAAGCTGAGACTATTCCGAGACTTTTGGATGCTCCTATTCTGGAAAATGCGAACGCAAAAATTGTTTCCTGTGGAGCTCGTCATAGTTGCATTATCACTGCATTCACTTGCAAACCTAACACTGGTCATTTGTTGCAAATGATGAAGCTTGGCTTGGGTGATGTGATCGACCGCAACATTCCAGCGCAAGTCATAATCGATGGATGTGTCCCAAAAAACGTGGCATGTGGCTGGTGGCATACCTTGCTTCTGGCCGAACTACCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

402

Amino Acids

41.87

Weight (kDa)

5.07

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 35 - 130 3.2e-13 RCC1-like domain
WD40_RLD PF25390 212 - 397 1.1e-31 RCC1-like domain
RCC1 PF00415 243 - 291 1.5e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 278 - 307 6.3e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 294 - 345 2.8e-11 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 314
AccIII TCCGGA 1 cut(s) 828
AclWI GGATC 1 cut(s) 504
AcoI YGGCCR 3 cut(s) 125, 183, 1191
AcuI CTGAAG 3 cut(s) 318, 558, 570
AcyI GRCGYC 1 cut(s) 700
AfaI GTAC 1 cut(s) 781
AfiI CCNNNNNNNGG 2 cut(s) 134, 1061
AgsI TTSAA 3 cut(s) 440, 567, 661
AjnI CCWGG 2 cut(s) 143, 664
AjuI GAANNNNNNNTTGG 2 cut(s) 1076, 1108
Alw21I GWGCWC 3 cut(s) 85, 733, 1018
Alw26I GTCTC 3 cut(s) 814, 941, 952
AlwI GGATC 1 cut(s) 504
AlwNI CAGNNNCTG 2 cut(s) 356, 725
Aor13HI TCCGGA 1 cut(s) 828
AoxI GGCC 3 cut(s) 125, 183, 1191
ApeKI GCWGC 5 cut(s) 317, 320, 599, 689, 845
AspLEI GCGC 2 cut(s) 334, 1126
AsuC2I CCSGG 2 cut(s) 78, 129
AsuHPI GGTGA 3 cut(s) 632, 896, 1109
BalI TGGCCA 1 cut(s) 185
BanII GRGCYC 2 cut(s) 85, 1018
Bbv12I GWGCWC 3 cut(s) 85, 733, 1018
BbvI GCAGC 5 cut(s) 307, 329, 611, 676, 832
BccI CCATC 4 cut(s) 372, 427, 875, 1133
BceAI ACGGC 1 cut(s) 25
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 2 cut(s) 145, 666
BciVI GTATCC 1 cut(s) 836
BclI TGATCA 1 cut(s) 937
BcnI CCSGG 2 cut(s) 78, 129
BcoDI GTCTC 3 cut(s) 814, 941, 952
BfaI CTAG 3 cut(s) 308, 543, 710
BfmI CTRYAG 2 cut(s) 321, 846
BfuAI ACCTGC 1 cut(s) 314
BfuI GTATCC 1 cut(s) 836
Bme1390I CCNGG 4 cut(s) 78, 129, 145, 666
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 4 cut(s) 78, 129, 145, 666
BmsI GCATC 2 cut(s) 712, 958
BpmI CTGGAG 6 cut(s) 166, 378, 573, 714, 747, 951
BpuEI CTTGAG 1 cut(s) 483
BpuMI CCSGG 2 cut(s) 78, 129
Bsa29I ATCGAT 1 cut(s) 1137
BsaHI GRCGYC 1 cut(s) 700
BsaJI CCNNGG 2 cut(s) 180, 664
BsaWI WCCGGW 2 cut(s) 274, 828
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 1061
Bse1I ACTGG 4 cut(s) 361, 520, 934, 1066
Bse3DI GCAATG 2 cut(s) 408, 638
BseAI TCCGGA 1 cut(s) 828
BseBI CCWGG 2 cut(s) 145, 666
BseCI ATCGAT 1 cut(s) 1137
BseDI CCNNGG 2 cut(s) 180, 664
BseGI GGATG 5 cut(s) 157, 383, 451, 973, 1148
BseLI CCNNNNNNNGG 2 cut(s) 134, 1061
BseMI GCAATG 2 cut(s) 408, 638
BseMII CTCAG 3 cut(s) 183, 648, 936
BseNI ACTGG 4 cut(s) 361, 520, 934, 1066
BseRI GAGGAG 3 cut(s) 44, 375, 561
BseX3I CGGCCG 1 cut(s) 125
BseXI GCAGC 5 cut(s) 307, 329, 611, 676, 832
Bsh1285I CGRYCG 2 cut(s) 128, 1111
BshFI GGCC 3 cut(s) 127, 185, 1193
BshVI ATCGAT 1 cut(s) 1137
BsiEI CGRYCG 2 cut(s) 128, 1111
BsiHKAI GWGCWC 3 cut(s) 85, 733, 1018
BsiSI CCGG 4 cut(s) 78, 128, 275, 829
BslFI GGGAC 1 cut(s) 1133
BslI CCNNNNNNNGG 2 cut(s) 134, 1061
BsmAI GTCTC 3 cut(s) 814, 941, 952
BsmFI GGGAC 1 cut(s) 1133
BsmI GAATGC 1 cut(s) 1040
BsnI GGCC 3 cut(s) 127, 185, 1193
Bsp1286I GDGCHC 3 cut(s) 85, 733, 1018
Bsp13I TCCGGA 1 cut(s) 828
Bsp143I GATC 4 cut(s) 229, 509, 937, 1104
Bsp19I CCATGG 1 cut(s) 180
BspANI GGCC 3 cut(s) 127, 185, 1193
BspCNI CTCAG 3 cut(s) 184, 647, 937
BspDI ATCGAT 1 cut(s) 1137
BspEI TCCGGA 1 cut(s) 828
BspLI GGNNCC 1 cut(s) 279
BspMAI CTGCAG 2 cut(s) 325, 850
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 1 cut(s) 504
BsrDI GCAATG 2 cut(s) 408, 638
BsrI ACTGG 4 cut(s) 361, 520, 934, 1066
BssECI CCNNGG 2 cut(s) 180, 664
BssMI GATC 4 cut(s) 229, 509, 937, 1104
BssNI GRCGYC 1 cut(s) 700
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 2 cut(s) 145, 666
Bst4CI ACNGT 5 cut(s) 118, 765, 855, 865, 921
Bst6I CTCTTC 3 cut(s) 294, 571, 817
BstACI GRCGYC 1 cut(s) 700
BstAPI GCANNNNNTGC 1 cut(s) 1183
BstC8I GCNNGC 1 cut(s) 597
BstDEI CTNAG 3 cut(s) 192, 634, 945
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 5 cut(s) 157, 383, 451, 973, 1148
BstHHI GCGC 2 cut(s) 334, 1126
BstKTI GATC 4 cut(s) 232, 512, 940, 1107
BstMAI GTCTC 3 cut(s) 814, 941, 952
BstMBI GATC 4 cut(s) 229, 509, 937, 1104
BstMCI CGRYCG 2 cut(s) 128, 1111
BstNI CCWGG 2 cut(s) 145, 666
BstNSI RCATGY 1 cut(s) 1167
BstSCI CCNGG 4 cut(s) 76, 127, 143, 664
BstSFI CTRYAG 2 cut(s) 321, 846
BstV1I GCAGC 5 cut(s) 307, 329, 611, 676, 832
BstZI CGGCCG 1 cut(s) 125
Bsu15I ATCGAT 1 cut(s) 1137
BsuI GTATCC 1 cut(s) 836
BsuRI GGCC 3 cut(s) 127, 185, 1193
BsuTUI ATCGAT 1 cut(s) 1137
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 5 cut(s) 157, 383, 451, 973, 1148
BtsI GCAGTG 1 cut(s) 1035
BtsIMutI CAGTG 4 cut(s) 513, 770, 1035, 1059
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 1 cut(s) 597
CaiI CAGNNNCTG 2 cut(s) 356, 725
CfoI GCGC 2 cut(s) 334, 1126
ClaI ATCGAT 1 cut(s) 1137
CseI GACGC 1 cut(s) 708
Csp6I GTAC 1 cut(s) 780
CspCI CAANNNNNGTGG 2 cut(s) 1140, 1175
CviAII CATG 7 cut(s) 181, 213, 263, 372, 526, 645, 1164
CviQI GTAC 1 cut(s) 780
DdeI CTNAG 3 cut(s) 192, 634, 945
DpnI GATC 4 cut(s) 231, 511, 939, 1106
DpnII GATC 4 cut(s) 229, 509, 937, 1104
EaeI YGGCCR 3 cut(s) 125, 183, 1191
EagI CGGCCG 1 cut(s) 125
Eam1104I CTCTTC 3 cut(s) 294, 571, 817
EarI CTCTTC 3 cut(s) 294, 571, 817
EciI GGCGGA 3 cut(s) 27, 57, 534
Ecl136II GAGCTC 2 cut(s) 83, 1016
EclXI CGGCCG 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 180
Eco24I GRGCYC 2 cut(s) 85, 1018
Eco52I CGGCCG 1 cut(s) 125
Eco53kI GAGCTC 2 cut(s) 83, 1016
Eco57I CTGAAG 3 cut(s) 318, 558, 570
EcoICRI GAGCTC 2 cut(s) 83, 1016
EcoRII CCWGG 2 cut(s) 143, 664
EcoT14I CCWWGG 1 cut(s) 180
EcoT22I ATGCAT 1 cut(s) 898
EcoT38I GRGCYC 2 cut(s) 85, 1018
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 7 cut(s) 184, 216, 266, 375, 529, 648, 1167
FalI AAGNNNNNCTT 4 cut(s) 568, 600, 1076, 1108
FaqI GGGAC 1 cut(s) 1133
FatI CATG 7 cut(s) 180, 212, 262, 371, 525, 644, 1163
FbaI TGATCA 1 cut(s) 937
FokI GGATG 5 cut(s) 164, 390, 458, 980, 1155
FriOI GRGCYC 2 cut(s) 85, 1018
FspBI CTAG 3 cut(s) 308, 543, 710
GlaI GCGC 2 cut(s) 333, 1125
GsuI CTGGAG 6 cut(s) 166, 378, 573, 714, 747, 951
HaeIII GGCC 3 cut(s) 127, 185, 1193
HapII CCGG 4 cut(s) 78, 128, 275, 829
HgaI GACGC 1 cut(s) 708
HhaI GCGC 2 cut(s) 334, 1126
Hin1I GRCGYC 1 cut(s) 700
Hin1II CATG 7 cut(s) 184, 216, 266, 375, 529, 648, 1167
Hin6I GCGC 2 cut(s) 332, 1124
HinP1I GCGC 2 cut(s) 332, 1124
HindIII AAGCTT 1 cut(s) 1085
HinfI GANTC 3 cut(s) 194, 522, 907
HpaII CCGG 4 cut(s) 78, 128, 275, 829
HphI GGTGA 3 cut(s) 632, 896, 1109
Hpy166II GTNNAC 2 cut(s) 367, 770
Hpy188I TCNGA 3 cut(s) 193, 721, 957
Hpy188III TCNNGA 5 cut(s) 198, 472, 507, 829, 980
Hpy8I GTNNAC 2 cut(s) 367, 770
Hpy99I CGWCG 1 cut(s) 118
HpyAV CCTTC 2 cut(s) 43, 397
HpyCH4III ACNGT 5 cut(s) 118, 765, 855, 865, 921
HpyCH4IV ACGT 1 cut(s) 1158
HpyF3I CTNAG 3 cut(s) 192, 634, 945
HpySE526I ACGT 1 cut(s) 1158
Hsp92I GRCGYC 1 cut(s) 700
Hsp92II CATG 7 cut(s) 184, 216, 266, 375, 529, 648, 1167
HspAI GCGC 2 cut(s) 332, 1124
Kpn2I TCCGGA 1 cut(s) 828
Ksp22I TGATCA 1 cut(s) 937
Kzo9I GATC 4 cut(s) 229, 509, 937, 1104
LmnI GCTCC 7 cut(s) 80, 277, 548, 728, 932, 976, 1013
Lsp1109I GCAGC 5 cut(s) 307, 329, 611, 676, 832
LweI GCATC 2 cut(s) 712, 958
MaeI CTAG 3 cut(s) 308, 543, 710
MaeII ACGT 1 cut(s) 1158
MaeIII GTNAC 4 cut(s) 137, 247, 346, 652
MalI GATC 4 cut(s) 231, 511, 939, 1106
MboI GATC 4 cut(s) 229, 509, 937, 1104
MboII GAAGA 7 cut(s) 65, 281, 569, 576, 585, 588, 804
MhlI GDGCHC 3 cut(s) 85, 733, 1018
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 1 cut(s) 999
MluNI TGGCCA 1 cut(s) 185
MlyI GAGTC 1 cut(s) 203
Mox20I TGGCCA 1 cut(s) 185
Mph1103I ATGCAT 1 cut(s) 898
MroI TCCGGA 1 cut(s) 828
MscI TGGCCA 1 cut(s) 185
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 2 cut(s) 376, 643
Msp20I TGGCCA 1 cut(s) 185
MspA1I CMGCKG 4 cut(s) 296, 320, 602, 878
MspI CCGG 4 cut(s) 78, 128, 275, 829
MspR9I CCNGG 4 cut(s) 78, 129, 145, 666
Mva1269I GAATGC 1 cut(s) 1040
MvaI CCWGG 2 cut(s) 145, 666
NciI CCSGG 2 cut(s) 78, 129
NcoI CCATGG 1 cut(s) 180
NdeII GATC 4 cut(s) 229, 509, 937, 1104
NlaIII CATG 7 cut(s) 184, 216, 266, 375, 529, 648, 1167
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 2 cut(s) 247, 652
NsiI ATGCAT 1 cut(s) 898
NspI RCATGY 1 cut(s) 1167
PctI GAATGC 1 cut(s) 1040
PfeI GAWTC 2 cut(s) 522, 907
PfoI TCCNGGA 2 cut(s) 76, 143
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Psp124BI GAGCTC 2 cut(s) 85, 1018
Psp6I CCWGG 2 cut(s) 143, 664
PspGI CCWGG 2 cut(s) 143, 664
PspN4I GGNNCC 1 cut(s) 279
PstI CTGCAG 2 cut(s) 325, 850
PstNI CAGNNNCTG 2 cut(s) 356, 725
PvuII CAGCTG 4 cut(s) 296, 320, 602, 878
RsaI GTAC 1 cut(s) 781
RsaNI GTAC 1 cut(s) 780
RseI CAYNNNNRTG 2 cut(s) 376, 643
SacI GAGCTC 2 cut(s) 85, 1018
SaqAI TTAA 1 cut(s) 312
Sau3AI GATC 4 cut(s) 229, 509, 937, 1104
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 4 cut(s) 78, 129, 145, 666
SduI GDGCHC 3 cut(s) 85, 733, 1018
SfaNI GCATC 2 cut(s) 712, 958
SfcI CTRYAG 2 cut(s) 321, 846
SmiMI CAYNNNNRTG 2 cut(s) 376, 643
SmlI CTYRAG 1 cut(s) 498
SmoI CTYRAG 1 cut(s) 498
Sse9I AATT 1 cut(s) 999
SspMI CTAG 3 cut(s) 308, 543, 710
SstI GAGCTC 2 cut(s) 85, 1018
StyD4I CCNGG 4 cut(s) 76, 127, 143, 664
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 5 cut(s) 118, 765, 855, 865, 921
TaiI ACGT 1 cut(s) 1161
TaqI TCGA 3 cut(s) 221, 1107, 1137
TasI AATT 1 cut(s) 999
TatI WGTACW 1 cut(s) 779
TauI GCSGC 5 cut(s) 91, 103, 127, 165, 174
TfiI GAWTC 2 cut(s) 522, 907
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 4 cut(s) 520, 770, 1042, 1066
TseFI GTSAC 2 cut(s) 247, 652
TseI GCWGC 5 cut(s) 317, 320, 599, 689, 845
Tsp45I GTSAC 2 cut(s) 247, 652
TspDTI ATGAA 5 cut(s) 17, 600, 639, 804, 1097
TspRI CASTG 4 cut(s) 520, 770, 1042, 1066
XceI RCATGY 1 cut(s) 1167
XspI CTAG 3 cut(s) 308, 543, 710
Zsp2I ATGCAT 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.