Rh1DG344100

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0004604
Physical Location & Seq
Forward (+)
56818303 .. 56823882
5580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG344100.1

Sequence Viewer

Length: 993 bp
ATGAATGACGGCGGGGATGTGAATATGGAGGAGAAAGGGGGCGGAGAGAAGCTGGTGTTGATGTGGGGTTATCTTCCCGGAGCTCTGCCGCAAAGGTCGCCGCTTTTGTCGCCGACGGTTGTGCGGCCGGGTGGTGATTACTCCTGGAGGGATGTGTTTGGCGGCGGTTGCGGCTTCGCCATGGCCATTTCTGAGTCTGGAAAGCTGATTACATGGGGTTCGACAGATGATCTGGGTCAAAGCTATGTGACATCTGGGAAGCATGGGGAAACACCGGAGCCTTTTCCTCTTCCAGCTGAAGTTTCTCTAGTTAAGGCAGCAGCAGGTTGGGCGCATTGTGTTGCAGTTACAGATATTGGAGGAGTTTACACATGGGGATGGAAAGAGTGTGTTCCCTCTGGGAAGGTCATTGCTGAAGCATCTACGAGTGCAAACTTTGAAAAGGATGTATTGGAAAGGCAGAGTTCTTTCTTGACAGACCAAGTTAGCCCTCGCTCTCAAGGCTCACGATCCACTGGTGGAACCATGTCTGCTACTGAAGCTAGAGGAGCTGGAGAAGAAAGTTCAAAGCGAAGAAGAGTATCTTCAGCAAAGCAAGCAGCTGAAAGTTCACCGTCTGGTGATGAAACTCTCTCAGCATTGCCATGTCTTGTGACTTTGAACCCAGGAGTTAGAATAGCCAATGTTGCAGCTGGAGGACGCCATACTCTAGCATTGTCAGATATGGGACAGGTGTGGGGATGGGGATATGGAGGTGAAGGGCAGCTTGGTCTGGGCTCACGGATACGTATGGTGTCCACCCCTCATCCTATACCTTGTATCAAGTCCTCTTCTTATGGGATCATGAATTCAGAGGAACACAGTTTCAGAGTACCTGGAAGTTATGTGAAAGGGATTGCCTGCGGAGGTCGACATAGTGCAGTGATAACAGATGCTGGAGCCCTACTTACTTTCGGTTGGGGGCTTTATGGACAGGGTGCTGATCTGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

330

Amino Acids

34.37

Weight (kDa)

5.91

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 36 - 130 9.1e-13 RCC1-like domain
WD40_RLD PF25390 212 - 325 5.5e-19 RCC1-like domain
RCC1_2 PF13540 226 - 255 1.4e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 243 - 309 6.5e-07 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 314
AccI GTMKAC 1 cut(s) 910
AciI CCGC 9 cut(s) 12, 42, 89, 101, 124, 162, 165, 171, 903
AclWI GGATC 2 cut(s) 504, 848
AcoI YGGCCR 2 cut(s) 125, 183
AcsI RAATTY 1 cut(s) 847
AcuI CTGAAG 4 cut(s) 318, 435, 558, 570
AcyI GRCGYC 1 cut(s) 700
AfaI GTAC 1 cut(s) 873
AgsI TTSAA 3 cut(s) 440, 567, 661
AjnI CCWGG 3 cut(s) 143, 664, 874
AjuI GAANNNNNNNTTGG 2 cut(s) 750, 782
Alw21I GWGCWC 1 cut(s) 85
AlwI GGATC 2 cut(s) 504, 848
AlwNI CAGNNNCTG 1 cut(s) 935
AoxI GGCC 2 cut(s) 125, 183
ApeKI GCWGC 5 cut(s) 317, 320, 599, 689, 763
ApoI RAATTY 1 cut(s) 847
AspLEI GCGC 1 cut(s) 334
AsuC2I CCSGG 2 cut(s) 78, 129
AsuHPI GGTGA 4 cut(s) 146, 603, 632, 767
BalI TGGCCA 1 cut(s) 185
BanII GRGCYC 3 cut(s) 85, 779, 943
Bbv12I GWGCWC 1 cut(s) 85
BbvI GCAGC 5 cut(s) 329, 332, 611, 701, 775
BccI CCATC 2 cut(s) 372, 735
BceAI ACGGC 1 cut(s) 25
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 3 cut(s) 145, 666, 876
BciVI GTATCC 1 cut(s) 777
BcnI CCSGG 2 cut(s) 78, 129
BfaI CTAG 3 cut(s) 308, 543, 710
BfuAI ACCTGC 1 cut(s) 314
BfuI GTATCC 1 cut(s) 777
Bme1390I CCNGG 5 cut(s) 78, 129, 145, 666, 876
BmiI GGNNCC 3 cut(s) 279, 523, 940
BmrFI CCNGG 5 cut(s) 78, 129, 145, 666, 876
BmsI GCATC 2 cut(s) 428, 922
BpmI CTGGAG 4 cut(s) 166, 573, 714, 957
BpuEI CTTGAG 1 cut(s) 483
BpuMI CCSGG 2 cut(s) 78, 129
BsaAI YACGTR 1 cut(s) 788
BsaHI GRCGYC 1 cut(s) 700
BsaJI CCNNGG 2 cut(s) 180, 664
BsaWI WCCGGW 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 520
Bse3DI GCAATG 2 cut(s) 408, 638
BseBI CCWGG 3 cut(s) 145, 666, 876
BseDI CCNNGG 2 cut(s) 180, 664
BseGI GGATG 6 cut(s) 22, 157, 383, 451, 746, 805
BseMI GCAATG 2 cut(s) 408, 638
BseMII CTCAG 2 cut(s) 183, 648
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 3 cut(s) 44, 375, 561
BseX3I CGGCCG 1 cut(s) 125
BseXI GCAGC 5 cut(s) 329, 332, 611, 701, 775
BsgI GTGCAG 1 cut(s) 939
Bsh1285I CGRYCG 1 cut(s) 128
BshFI GGCC 2 cut(s) 127, 185
BsiEI CGRYCG 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 85
BsiSI CCGG 3 cut(s) 78, 128, 275
BslFI GGGAC 1 cut(s) 741
BsmFI GGGAC 1 cut(s) 741
BsnI GGCC 2 cut(s) 127, 185
Bsp1286I GDGCHC 3 cut(s) 85, 779, 943
Bsp143I GATC 4 cut(s) 229, 509, 840, 982
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 9 cut(s) 12, 42, 89, 101, 124, 162, 165, 171, 903
BspANI GGCC 2 cut(s) 127, 185
BspCNI CTCAG 2 cut(s) 184, 647
BspHI TCATGA 1 cut(s) 843
BspLI GGNNCC 3 cut(s) 279, 523, 940
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 2 cut(s) 504, 848
BsrDI GCAATG 2 cut(s) 408, 638
BsrI ACTGG 1 cut(s) 520
BssECI CCNNGG 2 cut(s) 180, 664
BssMI GATC 4 cut(s) 229, 509, 840, 982
BssNI GRCGYC 1 cut(s) 700
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 3 cut(s) 145, 666, 876
Bst4CI ACNGT 3 cut(s) 118, 615, 863
Bst6I CTCTTC 3 cut(s) 294, 571, 835
BstACI GRCGYC 1 cut(s) 700
BstBAI YACGTR 1 cut(s) 788
BstC8I GCNNGC 2 cut(s) 597, 901
BstDEI CTNAG 2 cut(s) 192, 634
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 6 cut(s) 22, 157, 383, 451, 746, 805
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 4 cut(s) 232, 512, 843, 985
BstMBI GATC 4 cut(s) 229, 509, 840, 982
BstMCI CGRYCG 1 cut(s) 128
BstNI CCWGG 3 cut(s) 145, 666, 876
BstSCI CCNGG 5 cut(s) 76, 127, 143, 664, 874
BstSNI TACGTA 1 cut(s) 788
BstV1I GCAGC 5 cut(s) 329, 332, 611, 701, 775
BstZI CGGCCG 1 cut(s) 125
BsuI GTATCC 1 cut(s) 777
BsuRI GGCC 2 cut(s) 127, 185
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 6 cut(s) 22, 157, 383, 451, 746, 805
BtsI GCAGTG 1 cut(s) 927
BtsIMutI CAGTG 2 cut(s) 513, 927
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 2 cut(s) 597, 901
CaiI CAGNNNCTG 1 cut(s) 935
CciI TCATGA 1 cut(s) 843
CfoI GCGC 1 cut(s) 334
CseI GACGC 1 cut(s) 708
Csp6I GTAC 1 cut(s) 872
CviAII CATG 7 cut(s) 181, 213, 263, 372, 526, 645, 844
CviQI GTAC 1 cut(s) 872
DdeI CTNAG 2 cut(s) 192, 634
DpnI GATC 4 cut(s) 231, 511, 842, 984
DpnII GATC 4 cut(s) 229, 509, 840, 982
EaeI YGGCCR 2 cut(s) 125, 183
EagI CGGCCG 1 cut(s) 125
Eam1104I CTCTTC 3 cut(s) 294, 571, 835
EarI CTCTTC 3 cut(s) 294, 571, 835
EciI GGCGGA 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 83
EclXI CGGCCG 1 cut(s) 125
Eco105I TACGTA 1 cut(s) 788
Eco130I CCWWGG 1 cut(s) 180
Eco24I GRGCYC 3 cut(s) 85, 779, 943
Eco52I CGGCCG 1 cut(s) 125
Eco53kI GAGCTC 1 cut(s) 83
Eco57I CTGAAG 4 cut(s) 318, 435, 558, 570
EcoICRI GAGCTC 1 cut(s) 83
EcoRI GAATTC 1 cut(s) 847
EcoRII CCWGG 3 cut(s) 143, 664, 874
EcoT14I CCWWGG 1 cut(s) 180
EcoT38I GRGCYC 3 cut(s) 85, 779, 943
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 7 cut(s) 184, 216, 266, 375, 529, 648, 847
FalI AAGNNNNNCTT 4 cut(s) 568, 600, 750, 782
FaqI GGGAC 1 cut(s) 741
FatI CATG 7 cut(s) 180, 212, 262, 371, 525, 644, 843
FauI CCCGC 1 cut(s) 5
FblI GTMKAC 1 cut(s) 910
FokI GGATG 6 cut(s) 29, 164, 390, 458, 753, 792
FriOI GRGCYC 3 cut(s) 85, 779, 943
FspBI CTAG 3 cut(s) 308, 543, 710
GlaI GCGC 1 cut(s) 333
GsuI CTGGAG 4 cut(s) 166, 573, 714, 957
HaeIII GGCC 2 cut(s) 127, 185
HapII CCGG 3 cut(s) 78, 128, 275
HgaI GACGC 1 cut(s) 708
HhaI GCGC 1 cut(s) 334
Hin1I GRCGYC 1 cut(s) 700
Hin1II CATG 7 cut(s) 184, 216, 266, 375, 529, 648, 847
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HincII GTYRAC 1 cut(s) 911
HindII GTYRAC 1 cut(s) 911
HinfI GANTC 1 cut(s) 194
HpaII CCGG 3 cut(s) 78, 128, 275
HphI GGTGA 4 cut(s) 146, 603, 632, 767
Hpy166II GTNNAC 4 cut(s) 367, 611, 798, 911
Hpy188I TCNGA 4 cut(s) 193, 721, 853, 869
Hpy188III TCNNGA 4 cut(s) 198, 472, 507, 844
Hpy8I GTNNAC 4 cut(s) 367, 611, 798, 911
Hpy99I CGWCG 1 cut(s) 118
HpyAV CCTTC 2 cut(s) 397, 752
HpyCH4III ACNGT 3 cut(s) 118, 615, 863
HpyCH4IV ACGT 1 cut(s) 787
HpyCH4V TGCA 4 cut(s) 344, 431, 689, 920
HpyF3I CTNAG 2 cut(s) 192, 634
HpySE526I ACGT 1 cut(s) 787
Hsp92I GRCGYC 1 cut(s) 700
Hsp92II CATG 7 cut(s) 184, 216, 266, 375, 529, 648, 847
HspAI GCGC 1 cut(s) 332
Kzo9I GATC 4 cut(s) 229, 509, 840, 982
LmnI GCTCC 4 cut(s) 80, 277, 548, 938
Lsp1109I GCAGC 5 cut(s) 329, 332, 611, 701, 775
LweI GCATC 2 cut(s) 428, 922
MaeI CTAG 3 cut(s) 308, 543, 710
MaeII ACGT 1 cut(s) 787
MaeIII GTNAC 3 cut(s) 247, 346, 652
MalI GATC 4 cut(s) 231, 511, 842, 984
MboI GATC 4 cut(s) 229, 509, 840, 982
MboII GAAGA 7 cut(s) 65, 281, 569, 576, 585, 588, 822
MhlI GDGCHC 3 cut(s) 85, 779, 943
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 1 cut(s) 847
MluNI TGGCCA 1 cut(s) 185
MlyI GAGTC 1 cut(s) 203
Mox20I TGGCCA 1 cut(s) 185
MscI TGGCCA 1 cut(s) 185
MseI TTAA 2 cut(s) 312, 991
MslI CAYNNNNRTG 2 cut(s) 376, 643
Msp20I TGGCCA 1 cut(s) 185
MspA1I CMGCKG 3 cut(s) 296, 602, 692
MspI CCGG 3 cut(s) 78, 128, 275
MspR9I CCNGG 5 cut(s) 78, 129, 145, 666, 876
MvaI CCWGG 3 cut(s) 145, 666, 876
NciI CCSGG 2 cut(s) 78, 129
NcoI CCATGG 1 cut(s) 180
NdeII GATC 4 cut(s) 229, 509, 840, 982
NlaIII CATG 7 cut(s) 184, 216, 266, 375, 529, 648, 847
NlaIV GGNNCC 3 cut(s) 279, 523, 940
NmuCI GTSAC 2 cut(s) 247, 652
PagI TCATGA 1 cut(s) 843
PfoI TCCNGGA 2 cut(s) 76, 143
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Ppu21I YACGTR 1 cut(s) 788
Psp124BI GAGCTC 1 cut(s) 85
Psp6I CCWGG 3 cut(s) 143, 664, 874
PspGI CCWGG 3 cut(s) 143, 664, 874
PspN4I GGNNCC 3 cut(s) 279, 523, 940
PstNI CAGNNNCTG 1 cut(s) 935
PvuII CAGCTG 3 cut(s) 296, 602, 692
RsaI GTAC 1 cut(s) 873
RsaNI GTAC 1 cut(s) 872
RseI CAYNNNNRTG 2 cut(s) 376, 643
SacI GAGCTC 1 cut(s) 85
SalI GTCGAC 1 cut(s) 909
SaqAI TTAA 2 cut(s) 312, 991
Sau3AI GATC 4 cut(s) 229, 509, 840, 982
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 5 cut(s) 78, 129, 145, 666, 876
SduI GDGCHC 3 cut(s) 85, 779, 943
SfaNI GCATC 2 cut(s) 428, 922
SmiMI CAYNNNNRTG 2 cut(s) 376, 643
SmlI CTYRAG 1 cut(s) 498
SmoI CTYRAG 1 cut(s) 498
SnaBI TACGTA 1 cut(s) 788
Sse9I AATT 1 cut(s) 847
SsiI CCGC 9 cut(s) 12, 42, 89, 101, 124, 162, 165, 171, 903
SspMI CTAG 3 cut(s) 308, 543, 710
SstI GAGCTC 1 cut(s) 85
StyD4I CCNGG 5 cut(s) 76, 127, 143, 664, 874
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 3 cut(s) 118, 615, 863
TaiI ACGT 1 cut(s) 790
TaqI TCGA 2 cut(s) 221, 910
TasI AATT 1 cut(s) 847
TauI GCSGC 5 cut(s) 91, 103, 127, 165, 174
Tru1I TTAA 2 cut(s) 312, 991
Tru9I TTAA 2 cut(s) 312, 991
TscAI CASTG 2 cut(s) 520, 927
TseFI GTSAC 2 cut(s) 247, 652
TseI GCWGC 5 cut(s) 317, 320, 599, 689, 763
Tsp45I GTSAC 2 cut(s) 247, 652
TspDTI ATGAA 3 cut(s) 17, 639, 860
TspGWI ACGGA 1 cut(s) 796
TspRI CASTG 2 cut(s) 520, 927
XapI RAATTY 1 cut(s) 847
XmiI GTMKAC 1 cut(s) 910
XspI CTAG 3 cut(s) 308, 543, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.