Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013433

Physical Location & Seq

Genomic Coordinates Forward (+)

20714946 .. 20717443

Gene Structure 2498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGAGGAGGAGAAGTTAGTAAAGAGATGGGAGCTTGTTCATTAGCGTATCGTCGTGGAGATCAGAAATTACGCAAGTTCGTGACGGCGAGGAGTACTAAGTTTCTTCTATTTTGCTGCATCGCTTTCGTCTTGGTCACAATCGTTTGCCGATCTTCTCGTCCTTGGGTTAACAGTTCAATCGCCGTCGCAGATCGGATCTCCGGATCAAGGAAAGGTTATACACTTCTGATGAACACATGGAAGAGATATGATCTCTTAAAGAAGTCTGTTTCCCACTATGCATCATGTTCTAGGCTTGACTCTATCCACATTGTATGGAGTGAACCTAACCCTCCATCAGAGTCTCTGAAAGAGTATCTTCATAATGTTCTGAAGAAAAAGACTCGAGATGGGCATGAGGTTGAGCTGAGATTTGATATAAACAAAGAAGACAGTTTGAACAACAGATTTAAAGAGATTAAAGACTTGAAAACAGATGCTGTCTTCTCAATAGATGATGATATCATATTTCCTTGTCACACGGTAGATTTTGCATTCAACGTTTGGGAAAGTGCTCCGGATACAATGGTGGGGTTTGTGCCCCGTGTGCATTGGCCTGAAAAATCGAATGATAAAGCCAATTACTACACCTACAGTGGATGGTGGTCTGTTTGGTGGAGTGGTACATATAGCATGGTACTCTCAAAGGCAGCCTTCTTCCACAAAAAATACCTCAGCCTTTACACAAATAGCATGCCAGCATCAATCAGGGAATTCACAACAAAGAACAGGAACTGTGAAGATATTGCAATGTCATTCCTCATCGCAAATGCTACAAACGCTCCTGCTATATGGGTTAAAGGTAAAATATATGAAATCGGTTCAACTGGAATTAGTAGCATAGGAGGGCACACAGAAAAAAGAACACACTGCGTAAACCGGTTTGTGGCAGAATTTGGGAAAATGCCACTTGTATACACTTCCATGAAAGCCGTGGATAGCCGCAATTTATGGTTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008219 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010383 GO:0010393 GO:0010395 GO:0010400 GO:0010401 GO:0012505 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0030243 GO:0031410 GO:0031982 GO:0031984 GO:0032502 GO:0033993 GO:0035251 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0046527 GO:0048856 GO:0050896 GO:0051273 GO:0052541 GO:0052546 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097305 GO:0097708 GO:0098791 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

334

Amino Acids

38.3

Weight (kDa)

9.3

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_64	PF09258	74 - 328	1.1e-82	Glycosyl transferase family 64 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55830
fragaria_vesca	FvH4_7g24130
malus_domestica	MD01G1148500.v1.1 MD07G1215500.v1.1
prunus_persica	Prupe.2G247400_v2.0.a1 Prupe.2G247400_v2.0.a1
pyrus_communis	pycom01g16710 pycom07g19780
rosa_chinensis	RchiOBHm_Chr1g0369551
rosa_laevigata	RLG00000027119
rosa_multiflora	Rmu_sc0001154.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287530
rosa_rugosa	Rorug01G0351100
rosa_samantha	Rh1AG359400 Rh1BG323100 Rh1CG336400 Rh1DG353900
rosa_wichuraiana	Rw1G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	957
AccIII	TCCGGA	2 cut(s)	203, 559
AciI	CCGC	1 cut(s)	985
AclI	AACGTT	1 cut(s)	543
AclWI	GGATC	2 cut(s)	206, 214
AcsI	RAATTY	2 cut(s)	755, 935
AcuI	CTGAAG	1 cut(s)	395
AfaI	GTAC	3 cut(s)	97, 667, 681
AfiI	CCNNNNNNNGG	2 cut(s)	210, 928
AgeI	ACCGGT	1 cut(s)	921
AgsI	TTSAA	5 cut(s)	180, 442, 472, 541, 867
AluBI	AGCT	2 cut(s)	35, 409
AluI	AGCT	2 cut(s)	35, 409
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	1 cut(s)	351
AlwI	GGATC	2 cut(s)	206, 214
AlwNI	CAGNNNCTG	2 cut(s)	482, 777
Ama87I	CYCGRG	1 cut(s)	387
Aor13HI	TCCGGA	2 cut(s)	203, 559
AoxI	GGCC	1 cut(s)	596
ApeKI	GCWGC	2 cut(s)	117, 692
ApoI	RAATTY	2 cut(s)	755, 935
AsiGI	ACCGGT	1 cut(s)	921
AvaI	CYCGRG	1 cut(s)	387
BaeGI	GKGCMC	2 cut(s)	585, 894
BaeI	ACNNNNGTAYC	2 cut(s)	555, 588
BbsI	GAAGAC	2 cut(s)	438, 478
Bbv12I	GWGCWC	1 cut(s)	559
BbvCI	CCTCAGC	1 cut(s)	716
BbvI	GCAGC	2 cut(s)	104, 704
BccI	CCATC	4 cut(s)	22, 346, 386, 636
BceAI	ACGGC	3 cut(s)	102, 170, 959
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciVI	GTATCC	1 cut(s)	556
BcoDI	GTCTC	1 cut(s)	351
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	634
BfuI	GTATCC	1 cut(s)	556
BisI	GCNGC	3 cut(s)	118, 693, 985
BlsI	GCNGC	3 cut(s)	119, 694, 986
BmcAI	AGTACT	1 cut(s)	97
BmeT110I	CYCGRG	1 cut(s)	387
BmsI	GCATC	4 cut(s)	129, 293, 469, 752
BpiI	GAAGAC	2 cut(s)	438, 478
Bpu10I	CCTNAGC	1 cut(s)	716
BsaJI	CCNNGG	2 cut(s)	164, 975
BsaWI	WCCGGW	3 cut(s)	203, 559, 921
BsaXI	ACNNNNNCTCC	3 cut(s)	30, 808, 838
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 928
Bse118I	RCCGGY	1 cut(s)	921
Bse1I	ACTGG	1 cut(s)	874
Bse3DI	GCAATG	1 cut(s)	798
BseAI	TCCGGA	2 cut(s)	203, 559
BseDI	CCNNGG	2 cut(s)	164, 975
BseGI	GGATG	1 cut(s)	647
BseLI	CCNNNNNNNGG	2 cut(s)	210, 928
BseMI	GCAATG	1 cut(s)	798
BseMII	CTCAG	2 cut(s)	401, 730
BseNI	ACTGG	1 cut(s)	874
BseRI	GAGGAG	3 cut(s)	21, 24, 106
BseSI	GKGCMC	2 cut(s)	585, 894
BseXI	GCAGC	2 cut(s)	104, 704
BshFI	GGCC	1 cut(s)	598
BshTI	ACCGGT	1 cut(s)	921
BsiHKAI	GWGCWC	1 cut(s)	559
BsiHKCI	CYCGRG	1 cut(s)	387
BsiSI	CCGG	3 cut(s)	204, 560, 922
BslI	CCNNNNNNNGG	2 cut(s)	210, 928
BsmAI	GTCTC	1 cut(s)	351
BsmI	GAATGC	1 cut(s)	536
BsnI	GGCC	1 cut(s)	598
BsoBI	CYCGRG	1 cut(s)	387
Bsp1286I	GDGCHC	3 cut(s)	559, 585, 894
Bsp13I	TCCGGA	2 cut(s)	203, 559
Bsp143I	GATC	6 cut(s)	61, 152, 193, 198, 206, 253
BspACI	CCGC	1 cut(s)	985
BspANI	GGCC	1 cut(s)	598
BspCNI	CTCAG	2 cut(s)	402, 729
BspEI	TCCGGA	2 cut(s)	203, 559
BspPI	GGATC	2 cut(s)	206, 214
BsrDI	GCAATG	1 cut(s)	798
BsrFI	RCCGGY	1 cut(s)	921
BsrI	ACTGG	1 cut(s)	874
BssAI	RCCGGY	1 cut(s)	921
BssECI	CCNNGG	2 cut(s)	164, 975
BssMI	GATC	6 cut(s)	61, 152, 193, 198, 206, 253
BssNAI	GTATAC	1 cut(s)	958
BssT1I	CCWWGG	1 cut(s)	164
Bst1107I	GTATAC	1 cut(s)	958
Bst4CI	ACNGT	5 cut(s)	176, 437, 526, 638, 779
Bst6I	CTCTTC	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	737, 741
BstDEI	CTNAG	3 cut(s)	99, 410, 716
BstDSI	CCRYGG	1 cut(s)	975
BstF5I	GGATG	1 cut(s)	647
BstKTI	GATC	6 cut(s)	64, 155, 196, 201, 209, 256
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	6 cut(s)	61, 152, 193, 198, 206, 253
BstMWI	GCNNNNNNNGC	2 cut(s)	589, 821
BstNSI	RCATGY	1 cut(s)	739
BstSFI	CTRYAG	1 cut(s)	634
BstSLI	GKGCMC	2 cut(s)	585, 894
BstV1I	GCAGC	2 cut(s)	104, 704
BstV2I	GAAGAC	2 cut(s)	438, 478
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BstZ17I	GTATAC	1 cut(s)	958
BsuI	GTATCC	1 cut(s)	556
BsuRI	GGCC	1 cut(s)	598
BtgI	CCRYGG	1 cut(s)	975
BtgZI	GCGATG	2 cut(s)	106, 790
BtsCI	GGATG	1 cut(s)	647
BtsI	GCAGTG	1 cut(s)	910
BtsIMutI	CAGTG	2 cut(s)	643, 910
Cac8I	GCNNGC	2 cut(s)	737, 741
CaiI	CAGNNNCTG	2 cut(s)	482, 777
Cfr10I	RCCGGY	1 cut(s)	921
Csp6I	GTAC	3 cut(s)	96, 666, 680
CspAI	ACCGGT	1 cut(s)	921
CviAII	CATG	6 cut(s)	240, 288, 398, 676, 736, 967
CviJI	RGCY	9 cut(s)	35, 298, 409, 598, 620, 695, 720, 974, 984
CviKI_1	RGCY	9 cut(s)	35, 298, 409, 598, 620, 695, 720, 974, 984
CviQI	GTAC	3 cut(s)	96, 666, 680
DdeI	CTNAG	3 cut(s)	99, 410, 716
DpnI	GATC	6 cut(s)	63, 154, 195, 200, 208, 255
DpnII	GATC	6 cut(s)	61, 152, 193, 198, 206, 253
DraI	TTTAAA	1 cut(s)	454
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco130I	CCWWGG	1 cut(s)	164
Eco32I	GATATC	1 cut(s)	505
Eco57I	CTGAAG	1 cut(s)	395
Eco88I	CYCGRG	1 cut(s)	387
EcoRI	GAATTC	1 cut(s)	755
EcoRV	GATATC	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	164
EcoT22I	ATGCAT	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	6 cut(s)	243, 291, 401, 679, 739, 970
FalI	AAGNNNNNCTT	4 cut(s)	345, 377, 680, 712
FatI	CATG	6 cut(s)	239, 287, 397, 675, 735, 966
FblI	GTMKAC	1 cut(s)	957
Fnu4HI	GCNGC	3 cut(s)	118, 693, 985
FokI	GGATG	1 cut(s)	654
Fsp4HI	GCNGC	3 cut(s)	118, 693, 985
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	3 cut(s)	118, 693, 985
HaeIII	GGCC	1 cut(s)	598
HapII	CCGG	3 cut(s)	204, 560, 922
Hin1II	CATG	6 cut(s)	243, 291, 401, 679, 739, 970
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	3 cut(s)	302, 344, 385
HpaI	GTTAAC	1 cut(s)	172
HpaII	CCGG	3 cut(s)	204, 560, 922
Hpy166II	GTNNAC	4 cut(s)	172, 326, 919, 958
Hpy188I	TCNGA	6 cut(s)	66, 198, 231, 343, 351, 375
Hpy188III	TCNNGA	4 cut(s)	82, 204, 389, 560
Hpy8I	GTNNAC	4 cut(s)	172, 326, 919, 958
Hpy99I	CGWCG	2 cut(s)	57, 191
HpyAV	CCTTC	1 cut(s)	706
HpyCH4III	ACNGT	5 cut(s)	176, 437, 526, 638, 779
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	5 cut(s)	120, 284, 536, 592, 791
HpyF10VI	GCNNNNNNNGC	2 cut(s)	589, 821
HpyF3I	CTNAG	3 cut(s)	99, 410, 716
HpySE526I	ACGT	1 cut(s)	543
Hsp92II	CATG	6 cut(s)	243, 291, 401, 679, 739, 970
Kpn2I	TCCGGA	2 cut(s)	203, 559
KspAI	GTTAAC	1 cut(s)	172
Kzo9I	GATC	6 cut(s)	61, 152, 193, 198, 206, 253
LmnI	GCTCC	3 cut(s)	32, 562, 829
Lsp1109I	GCAGC	2 cut(s)	104, 704
LweI	GCATC	4 cut(s)	129, 293, 469, 752
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	543
MaeIII	GTNAC	3 cut(s)	82, 136, 518
MalI	GATC	6 cut(s)	63, 154, 195, 200, 208, 255
MboI	GATC	6 cut(s)	61, 152, 193, 198, 206, 253
MboII	GAAGA	9 cut(s)	98, 147, 256, 353, 388, 443, 478, 691, 794
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	3 cut(s)	559, 585, 894
MluCI	AATT	6 cut(s)	68, 622, 755, 873, 935, 988
MlyI	GAGTC	3 cut(s)	296, 353, 379
MnlI	CCTC	6 cut(s)	84, 345, 394, 725, 812, 881
Mph1103I	ATGCAT	1 cut(s)	286
MroI	TCCGGA	2 cut(s)	203, 559
MseI	TTAA	5 cut(s)	171, 260, 453, 462, 840
MslI	CAYNNNNRTG	1 cut(s)	965
MspI	CCGG	3 cut(s)	204, 560, 922
Mva1269I	GAATGC	1 cut(s)	536
MwoI	GCNNNNNNNGC	2 cut(s)	589, 821
NdeII	GATC	6 cut(s)	61, 152, 193, 198, 206, 253
NlaIII	CATG	6 cut(s)	243, 291, 401, 679, 739, 970
NmuCI	GTSAC	3 cut(s)	82, 136, 518
NsiI	ATGCAT	1 cut(s)	286
NspI	RCATGY	1 cut(s)	739
PaeI	GCATGC	1 cut(s)	739
PaeR7I	CTCGAG	1 cut(s)	387
PctI	GAATGC	1 cut(s)	536
PinAI	ACCGGT	1 cut(s)	921
PkrI	GCNGC	3 cut(s)	119, 694, 986
PleI	GAGTC	3 cut(s)	296, 352, 379
PpsI	GAGTC	3 cut(s)	296, 352, 379
Psp1406I	AACGTT	1 cut(s)	543
PstNI	CAGNNNCTG	2 cut(s)	482, 777
PsuI	RGATCY	1 cut(s)	198
RsaI	GTAC	3 cut(s)	97, 667, 681
RsaNI	GTAC	3 cut(s)	96, 666, 680
RseI	CAYNNNNRTG	1 cut(s)	965
SaqAI	TTAA	5 cut(s)	171, 260, 453, 462, 840
SatI	GCNGC	3 cut(s)	118, 693, 985
Sau3AI	GATC	6 cut(s)	61, 152, 193, 198, 206, 253
ScaI	AGTACT	1 cut(s)	97
SchI	GAGTC	3 cut(s)	296, 353, 379
SduI	GDGCHC	3 cut(s)	559, 585, 894
SetI	ASST	9 cut(s)	37, 220, 331, 405, 411, 546, 635, 717, 847
SfaNI	GCATC	4 cut(s)	129, 293, 469, 752
SfcI	CTRYAG	1 cut(s)	634
Sfr274I	CTCGAG	1 cut(s)	387
SlaI	CTCGAG	1 cut(s)	387
SmiMI	CAYNNNNRTG	1 cut(s)	965
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
SphI	GCATGC	1 cut(s)	739
Sse9I	AATT	6 cut(s)	68, 622, 755, 873, 935, 988
SsiI	CCGC	1 cut(s)	985
SspMI	CTAG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	5 cut(s)	176, 437, 526, 638, 779
TaiI	ACGT	1 cut(s)	546
TaqI	TCGA	2 cut(s)	388, 608
TasI	AATT	6 cut(s)	68, 622, 755, 873, 935, 988
TatI	WGTACW	1 cut(s)	95
TauI	GCSGC	1 cut(s)	987
Tru1I	TTAA	5 cut(s)	171, 260, 453, 462, 840
Tru9I	TTAA	5 cut(s)	171, 260, 453, 462, 840
TscAI	CASTG	2 cut(s)	643, 917
TseFI	GTSAC	3 cut(s)	82, 136, 518
TseI	GCWGC	2 cut(s)	117, 692
Tsp45I	GTSAC	3 cut(s)	82, 136, 518
TspDTI	ATGAA	5 cut(s)	30, 248, 353, 870, 983
TspRI	CASTG	2 cut(s)	643, 917
XapI	RAATTY	2 cut(s)	755, 935
XceI	RCATGY	1 cut(s)	739
XcmI	CCANNNNNNNNNTGG	1 cut(s)	973
XhoI	CTCGAG	1 cut(s)	387
XmiI	GTMKAC	1 cut(s)	957
XspI	CTAG	1 cut(s)	294
ZrmI	AGTACT	1 cut(s)	97
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.