Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0013433

Physical Location & Seq

Genomic Coordinates Forward (+)

29268741 .. 29271995

Gene Structure 3255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1215500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGAGGGAGCGTGTGGAACCGTAGGACGGTACAGAGGCTGCGGCAGCTGCTGATCTCGACCGTTGGATCGGTGAAGGTCAAGCTTCTGCTGTGCTGTTGCATCGGATTCACGCTCATCGTGCTCGCCAGTCGAGCTTCGGATTTTATGGGATGGACGAGTCACACTGCGGTTCTGGAACGGTCCTCGGATTCACGGAAAGGATATTCTATTGTAATGAACACATGGAAGAGATATGATCTTCTGAAGCAGTCTATTTCTCACTATTCTCGATGCCCTCGGCTTGATTCAATACATATTGTGTGGAGTGAGCCAAGTCCTCCGTCCGATTCTCTGACAAAATTTCTGGATCACATTGTACATCTGAACACGAGAGATGGGCGACAAGTTGAATTGAAATATGATATCAACAAGGAGGACAGTTTGAATAACAGATTTAAAGAAATTAAGGTTTTGAGAACAGATGCTGTTTTTTCAATTGACGATGATGTTATATTCCCTTGTTCTTCAGTAGAATTTGCTTTTGATGTTTGGCAAAGTGCATCGGATACAATGGTTGGATTTGTGCCTCGGATGCACTGGGTTGATCCGAAAGGTGATAAGAATCACTACATATATGGTGGATGGTGGTCAGTTTGGTGGACGGGTACATACAGTATGGTACTGTCTAAGGCAGCCTTTTTCCACAAAAAGTACCTGAGTTTATACACAAACGAAATGCCAGCTTCAATCAAAGAATTTATTACCAAGAACAGGAATTGTGAAGACATTGCAATGTCCTTTCTTGTAGCAAATGTAACTAATGCTCCCCCTATATGGGTGAAAGGTAAAATATTCGAGATTGGTTCAACTGGTATCAGTACCTTAGGAGGTCATACTGAAAAAAGAACCAACTGTGTCGATAGATTTGTTGCCGAGTTTGGACGAATGCCACTGGTACCCACATCTGTGAAGGCTGTTGACAGTCGAAACATCTGGTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008219 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010383 GO:0010393 GO:0010395 GO:0010400 GO:0010401 GO:0012505 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0030243 GO:0031410 GO:0031982 GO:0031984 GO:0032502 GO:0033993 GO:0035251 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0046527 GO:0048856 GO:0050896 GO:0051273 GO:0052541 GO:0052546 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097305 GO:0097708 GO:0098791 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

329

Amino Acids

37.69

Weight (kDa)

9.25

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_64	PF09258	69 - 321	6.1e-79	Glycosyl transferase family 64 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55830
fragaria_vesca	FvH4_7g24130
malus_domestica	MD01G1148500.v1.1 MD07G1215500.v1.1
prunus_persica	Prupe.2G247400_v2.0.a1 Prupe.2G247400_v2.0.a1
pyrus_communis	pycom01g16710 pycom07g19780
rosa_chinensis	RchiOBHm_Chr1g0369551
rosa_laevigata	RLG00000027119
rosa_multiflora	Rmu_sc0001154.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287530
rosa_rugosa	Rorug01G0351100
rosa_samantha	Rh1AG359400 Rh1BG323100 Rh1CG336400 Rh1DG353900
rosa_wichuraiana	Rw1G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	937
AccB1I	GGYRCC	1 cut(s)	937
AciI	CCGC	2 cut(s)	43, 170
AclWI	GGATC	3 cut(s)	76, 357, 581
AcsI	RAATTY	3 cut(s)	341, 515, 737
AcuI	CTGAAG	2 cut(s)	266, 492
AfaI	GTAC	7 cut(s)	33, 360, 649, 663, 695, 862, 939
AfiI	CCNNNNNNNGG	4 cut(s)	28, 753, 816, 817
AgsI	TTSAA	7 cut(s)	291, 392, 397, 427, 477, 729, 849
AleI	CACNNNNGTG	1 cut(s)	947
AluBI	AGCT	4 cut(s)	49, 85, 137, 725
AluI	AGCT	4 cut(s)	49, 85, 137, 725
Alw21I	GWGCWC	1 cut(s)	126
AlwI	GGATC	3 cut(s)	76, 357, 581
AlwNI	CAGNNNCTG	3 cut(s)	40, 52, 467
ApeKI	GCWGC	4 cut(s)	40, 46, 49, 674
ApoI	RAATTY	3 cut(s)	341, 515, 737
Asp718I	GGTACC	1 cut(s)	937
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	3 cut(s)	85, 608, 832
AvaII	GGWCC	1 cut(s)	183
AxyI	CCTNAGG	1 cut(s)	865
BaeI	ACNNNNGTAYC	2 cut(s)	540, 573
BanI	GGYRCC	1 cut(s)	937
BauI	CACGAG	1 cut(s)	370
BbsI	GAAGAC	1 cut(s)	771
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	4 cut(s)	27, 36, 58, 686
BccI	CCATC	3 cut(s)	147, 371, 618
BciVI	GTATCC	1 cut(s)	541
BfuI	GTATCC	1 cut(s)	541
BisI	GCNGC	5 cut(s)	41, 44, 47, 50, 675
BlsI	GCNGC	5 cut(s)	42, 45, 48, 51, 676
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	2 cut(s)	20, 939
BmrI	ACTGGG	1 cut(s)	589
BmsI	GCATC	5 cut(s)	111, 263, 454, 551, 564
BmuI	ACTGGG	1 cut(s)	589
BpiI	GAAGAC	1 cut(s)	771
BsaBI	GATNNNNATC	1 cut(s)	603
BsaJI	CCNNGG	3 cut(s)	186, 278, 569
BsaXI	ACNNNNNCTCC	2 cut(s)	790, 820
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 753, 816, 817
Bse1I	ACTGG	4 cut(s)	129, 584, 856, 939
Bse21I	CCTNAGG	1 cut(s)	865
Bse3DI	GCAATG	2 cut(s)	768, 780
Bse8I	GATNNNNATC	1 cut(s)	603
BseDI	CCNNGG	3 cut(s)	186, 278, 569
BseGI	GGATG	3 cut(s)	158, 579, 629
BseJI	GATNNNNATC	1 cut(s)	603
BseLI	CCNNNNNNNGG	4 cut(s)	28, 753, 816, 817
BseMI	GCAATG	2 cut(s)	768, 780
BseMII	CTCAG	1 cut(s)	689
BseNI	ACTGG	4 cut(s)	129, 584, 856, 939
BseXI	GCAGC	4 cut(s)	27, 36, 58, 686
Bsh1285I	CGRYCG	1 cut(s)	63
BshNI	GGYRCC	1 cut(s)	937
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	126
BslI	CCNNNNNNNGG	4 cut(s)	28, 753, 816, 817
BsmI	GAATGC	1 cut(s)	933
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp1407I	TGTACA	1 cut(s)	358
Bsp143I	GATC	5 cut(s)	54, 68, 238, 349, 586
BspACI	CCGC	2 cut(s)	43, 170
BspCNI	CTCAG	1 cut(s)	690
BspLI	GGNNCC	2 cut(s)	20, 939
BspPI	GGATC	3 cut(s)	76, 357, 581
BspT107I	GGYRCC	1 cut(s)	937
BsrDI	GCAATG	2 cut(s)	768, 780
BsrGI	TGTACA	1 cut(s)	358
BsrI	ACTGG	4 cut(s)	129, 584, 856, 939
BssECI	CCNNGG	3 cut(s)	186, 278, 569
BssMI	GATC	5 cut(s)	54, 68, 238, 349, 586
BssSI	CACGAG	1 cut(s)	370
Bst2BI	CACGAG	1 cut(s)	370
Bst4CI	ACNGT	9 cut(s)	23, 31, 64, 183, 422, 656, 666, 896, 965
Bst6I	CTCTTC	1 cut(s)	224
BstAUI	TGTACA	1 cut(s)	358
BstC8I	GCNNGC	2 cut(s)	126, 723
BstDEI	CTNAG	3 cut(s)	669, 698, 865
BstF5I	GGATG	3 cut(s)	158, 579, 629
BstKTI	GATC	5 cut(s)	57, 71, 241, 352, 589
BstMBI	GATC	5 cut(s)	54, 68, 238, 349, 586
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 49, 121, 134, 574
BstV1I	GCAGC	4 cut(s)	27, 36, 58, 686
BstV2I	GAAGAC	1 cut(s)	771
Bsu36I	CCTNAGG	1 cut(s)	865
BsuI	GTATCC	1 cut(s)	541
BtsCI	GGATG	3 cut(s)	158, 579, 629
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	3 cut(s)	165, 577, 932
Cac8I	GCNNGC	2 cut(s)	126, 723
CaiI	CAGNNNCTG	3 cut(s)	40, 52, 467
Cfr13I	GGNCC	1 cut(s)	183
Csp6I	GTAC	7 cut(s)	32, 359, 648, 662, 694, 861, 938
CviAII	CATG	1 cut(s)	225
CviJI	RGCY	9 cut(s)	40, 49, 85, 137, 283, 313, 677, 725, 956
CviKI_1	RGCY	9 cut(s)	40, 49, 85, 137, 283, 313, 677, 725, 956
CviQI	GTAC	7 cut(s)	32, 359, 648, 662, 694, 861, 938
DdeI	CTNAG	3 cut(s)	669, 698, 865
DpnI	GATC	5 cut(s)	56, 70, 240, 351, 588
DpnII	GATC	5 cut(s)	54, 68, 238, 349, 586
DraI	TTTAAA	1 cut(s)	439
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	183
Eco57I	CTGAAG	2 cut(s)	266, 492
Eco81I	CCTNAGG	1 cut(s)	865
EcoRV	GATATC	1 cut(s)	406
FaeI	CATG	1 cut(s)	228
FalI	AAGNNNNNCTT	2 cut(s)	662, 694
FatI	CATG	1 cut(s)	224
Fnu4HI	GCNGC	5 cut(s)	41, 44, 47, 50, 675
FokI	GGATG	3 cut(s)	165, 586, 636
Fsp4HI	GCNGC	5 cut(s)	41, 44, 47, 50, 675
GluI	GCNGC	5 cut(s)	41, 44, 47, 50, 675
Hin1II	CATG	1 cut(s)	228
HincII	GTYRAC	1 cut(s)	961
HindII	GTYRAC	1 cut(s)	961
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	6 cut(s)	108, 160, 191, 287, 329, 604
HphI	GGTGA	3 cut(s)	85, 608, 832
Hpy166II	GTNNAC	2 cut(s)	642, 961
Hpy188III	TCNNGA	5 cut(s)	58, 176, 270, 347, 838
Hpy8I	GTNNAC	2 cut(s)	642, 961
HpyAV	CCTTC	2 cut(s)	70, 946
HpyCH4III	ACNGT	9 cut(s)	23, 31, 64, 183, 422, 656, 666, 896, 965
HpyCH4V	TGCA	4 cut(s)	102, 542, 577, 773
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 49, 121, 134, 574
HpyF3I	CTNAG	3 cut(s)	669, 698, 865
Hsp92II	CATG	1 cut(s)	228
KpnI	GGTACC	1 cut(s)	941
Kzo9I	GATC	5 cut(s)	54, 68, 238, 349, 586
LmnI	GCTCC	2 cut(s)	9, 811
Lsp1109I	GCAGC	4 cut(s)	27, 36, 58, 686
LweI	GCATC	5 cut(s)	111, 263, 454, 551, 564
MaeIII	GTNAC	2 cut(s)	161, 796
MalI	GATC	5 cut(s)	56, 70, 240, 351, 588
MboI	GATC	5 cut(s)	54, 68, 238, 349, 586
MboII	GAAGA	4 cut(s)	233, 241, 498, 776
MfeI	CAATTG	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	7 cut(s)	341, 392, 444, 477, 515, 737, 757
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	2 cut(s)	46, 538
MnlI	CCTC	7 cut(s)	30, 196, 288, 330, 409, 579, 863
MseI	TTAA	2 cut(s)	438, 447
MslI	CAYNNNNRTG	2 cut(s)	773, 947
MspA1I	CMGCKG	1 cut(s)	49
MunI	CAATTG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	933
MwoI	GCNNNNNNNGC	5 cut(s)	46, 49, 121, 134, 574
NdeII	GATC	5 cut(s)	54, 68, 238, 349, 586
NlaIII	CATG	1 cut(s)	228
NlaIV	GGNNCC	2 cut(s)	20, 939
NmeAIII	GCCGAG	2 cut(s)	259, 940
NmuCI	GTSAC	1 cut(s)	161
OliI	CACNNNNGTG	1 cut(s)	947
PctI	GAATGC	1 cut(s)	933
PfeI	GAWTC	5 cut(s)	108, 191, 287, 329, 604
PkrI	GCNGC	5 cut(s)	42, 45, 48, 51, 676
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
PspN4I	GGNNCC	2 cut(s)	20, 939
PspPI	GGNCC	1 cut(s)	183
PstNI	CAGNNNCTG	3 cut(s)	40, 52, 467
PvuII	CAGCTG	1 cut(s)	49
RsaI	GTAC	7 cut(s)	33, 360, 649, 663, 695, 862, 939
RsaNI	GTAC	7 cut(s)	32, 359, 648, 662, 694, 861, 938
RseI	CAYNNNNRTG	2 cut(s)	773, 947
SaqAI	TTAA	2 cut(s)	438, 447
SatI	GCNGC	5 cut(s)	41, 44, 47, 50, 675
Sau3AI	GATC	5 cut(s)	54, 68, 238, 349, 586
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	126
SfaNI	GCATC	5 cut(s)	111, 263, 454, 551, 564
SinI	GGWCC	1 cut(s)	183
SmiMI	CAYNNNNRTG	2 cut(s)	773, 947
Sse9I	AATT	7 cut(s)	341, 392, 444, 477, 515, 737, 757
SsiI	CCGC	2 cut(s)	43, 170
SspI	AATATT	1 cut(s)	834
TaaI	ACNGT	9 cut(s)	23, 31, 64, 183, 422, 656, 666, 896, 965
TaqI	TCGA	6 cut(s)	59, 133, 271, 837, 900, 967
TasI	AATT	7 cut(s)	341, 392, 444, 477, 515, 737, 757
TatI	WGTACW	1 cut(s)	358
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	5 cut(s)	108, 191, 287, 329, 604
Tru1I	TTAA	2 cut(s)	438, 447
Tru9I	TTAA	2 cut(s)	438, 447
TscAI	CASTG	3 cut(s)	172, 584, 939
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	4 cut(s)	40, 46, 49, 674
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	233
TspGWI	ACGGA	2 cut(s)	211, 312
TspRI	CASTG	3 cut(s)	172, 584, 939
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	3 cut(s)	341, 515, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.