Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001154.1

Orthogroup ID

OG0013433

Physical Location & Seq

Genomic Coordinates Forward (+)

12313 .. 15526

Gene Structure 3214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001154.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

atggtaaatgagataactattacatccgatagattcggcacagactcgtatggtaaacaagaaacgacatcgtcaacagcatttcaagtaaagcaaaattctgccccctcctcctgctactccttccggtccaaacccagaaagcaaactcggttccgattcgagttcgtcaagacggagttcgcaaagccacgtggcgcgatgagggggggctggatgaaccggcgaggggttcagaggttccggcaggcgctgatctcgaccgtcggatcggtgaagattaagctcgtgctcggattctgcatcggctttactctcatcgctctcgccggccgcgcttcggagtttatgggatggacgagtcacactgcttcgctggaacggttctccggttcggggaaaggatatgctattgtaatgaacacatggaagagatacgatcttttgaagcagtcaatttctcactattccaggtgtccacggcttgattcgatacatattgtgtggagtgagccaaatcctccatcagattctctgaaaaaatttctaaaccacattatagagttgaacactagagatggacgacaagttaaattgaaatttgatatcaataaggaagacagtttgaacaacagatttaaagaaattccagatttggaaacagatgctgtcttctctatcgatgatgatgtcatattcccttgctcttctgtagaatttgctttcgatgtttggcaaagtgcatcagatactatggttggctttgtgcctcgtatgcactgggttgatcccacgaatggtcatatggatcattacatatatggtggatggtggtcggtttggtggactggtacatacagtatggtactctctaaggcagccttcttccacaaaaagtacctaagaatctacacaaatgaaatgccagcatcaatcaaagactttataaccaagagcaggaactgtgaagacattgcaatgtcttttcttgtagcaaatgtgactggtgctccccctatatgggttaaaggtaagatatttgagattggatcaactggaatcagtagcatgggaggccatactgaaaaaagaacccactgcgttgatagattcgctgctgagtttgggcgaatgccattggtacctacttctgtgaaagctgttgacagtcgcaacatctggttttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008219 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010383 GO:0010393 GO:0010395 GO:0010400 GO:0010401 GO:0012505 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0030243 GO:0031410 GO:0031982 GO:0031984 GO:0032502 GO:0033993 GO:0035251 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0046527 GO:0048856 GO:0050896 GO:0051273 GO:0052541 GO:0052546 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097305 GO:0097708 GO:0098791 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

396

Amino Acids

45.2

Weight (kDa)

9.48

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55830
fragaria_vesca	FvH4_7g24130
malus_domestica	MD01G1148500.v1.1 MD07G1215500.v1.1
prunus_persica	Prupe.2G247400_v2.0.a1 Prupe.2G247400_v2.0.a1
pyrus_communis	pycom01g16710 pycom07g19780
rosa_chinensis	RchiOBHm_Chr1g0369551
rosa_laevigata	RLG00000027119
rosa_multiflora	Rmu_sc0001154.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287530
rosa_rugosa	Rorug01G0351100
rosa_samantha	Rh1AG359400 Rh1BG323100 Rh1CG336400 Rh1DG353900
rosa_wichuraiana	Rw1G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	947
Acc65I	GGTACC	1 cut(s)	1141
AccB1I	GGYRCC	1 cut(s)	1141
AccII	CGCG	2 cut(s)	200, 336
AciI	CCGC	1 cut(s)	334
AclWI	GGATC	4 cut(s)	277, 782, 816, 1057
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	5 cut(s)	97, 542, 599, 645, 716
AcvI	CACGTG	1 cut(s)	194
AfaI	GTAC	4 cut(s)	853, 867, 899, 1143
AfiI	CCNNNNNNNGG	7 cut(s)	229, 340, 396, 797, 957, 1020, 1021
AgsI	TTSAA	5 cut(s)	86, 448, 568, 598, 628
AjnI	CCWGG	1 cut(s)	470
AluBI	AGCT	2 cut(s)	286, 1160
AluI	AGCT	2 cut(s)	286, 1160
Alw21I	GWGCWC	2 cut(s)	294, 1012
AlwI	GGATC	4 cut(s)	277, 782, 816, 1057
AlwNI	CAGNNNCTG	3 cut(s)	253, 668, 963
AoxI	GGCC	2 cut(s)	331, 1075
ApeKI	GCWGC	2 cut(s)	878, 1115
ApoI	RAATTY	5 cut(s)	97, 542, 599, 645, 716
Asp718I	GGTACC	1 cut(s)	1141
AspLEI	GCGC	3 cut(s)	200, 253, 338
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	129
BaeI	ACNNNNGTAYC	2 cut(s)	741, 774
BanI	GGYRCC	1 cut(s)	1141
BauI	CACGAG	1 cut(s)	287
BbrPI	CACGTG	1 cut(s)	194
BbsI	GAAGAC	3 cut(s)	624, 664, 975
Bbv12I	GWGCWC	2 cut(s)	294, 1012
BbvI	GCAGC	2 cut(s)	890, 1102
BccI	CCATC	4 cut(s)	348, 532, 572, 822
BceAI	ACGGC	1 cut(s)	497
BciT130I	CCWGG	1 cut(s)	472
BfaI	CTAG	1 cut(s)	573
BfmI	CTRYAG	1 cut(s)	711
BfoI	RGCGCY	1 cut(s)	254
BisI	GCNGC	3 cut(s)	334, 879, 1116
BlsI	GCNGC	3 cut(s)	335, 880, 1117
Bme1390I	CCNGG	1 cut(s)	472
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	3 cut(s)	155, 242, 1143
BmrFI	CCNGG	1 cut(s)	472
BmrI	ACTGGG	1 cut(s)	790
BmsI	GCATC	4 cut(s)	312, 655, 752, 938
BmuI	ACTGGG	1 cut(s)	790
BpiI	GAAGAC	3 cut(s)	624, 664, 975
Bsa29I	ATCGAT	1 cut(s)	681
BsaAI	YACGTR	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	479
BsaWI	WCCGGW	2 cut(s)	126, 389
BsaXI	ACNNNNNCTCC	2 cut(s)	994, 1024
Bsc4I	CCNNNNNNNGG	7 cut(s)	229, 340, 396, 797, 957, 1020, 1021
Bse118I	RCCGGY	2 cut(s)	222, 329
Bse1I	ACTGG	4 cut(s)	785, 853, 1009, 1060
Bse3DI	GCAATG	2 cut(s)	972, 984
BseBI	CCWGG	1 cut(s)	472
BseCI	ATCGAT	1 cut(s)	681
BseDI	CCNNGG	1 cut(s)	479
BseGI	GGATG	4 cut(s)	23, 222, 359, 833
BseLI	CCNNNNNNNGG	7 cut(s)	229, 340, 396, 797, 957, 1020, 1021
BseMI	GCAATG	2 cut(s)	972, 984
BseMII	CTCAG	1 cut(s)	1110
BseNI	ACTGG	4 cut(s)	785, 853, 1009, 1060
BseRI	GAGGAG	1 cut(s)	100
BseX3I	CGGCCG	1 cut(s)	331
BseXI	GCAGC	2 cut(s)	890, 1102
Bsh1236I	CGCG	2 cut(s)	200, 336
Bsh1285I	CGRYCG	2 cut(s)	264, 334
BshFI	GGCC	2 cut(s)	333, 1077
BshNI	GGYRCC	1 cut(s)	1141
BshVI	ATCGAT	1 cut(s)	681
BsiEI	CGRYCG	2 cut(s)	264, 334
BsiHKAI	GWGCWC	2 cut(s)	294, 1012
BsiSI	CCGG	5 cut(s)	127, 223, 244, 330, 390
BslI	CCNNNNNNNGG	7 cut(s)	229, 340, 396, 797, 957, 1020, 1021
BsmI	GAATGC	1 cut(s)	1137
BsnI	GGCC	2 cut(s)	333, 1077
Bsp1286I	GDGCHC	2 cut(s)	294, 1012
Bsp143I	GATC	6 cut(s)	255, 269, 439, 787, 808, 1049
BspACI	CCGC	1 cut(s)	334
BspANI	GGCC	2 cut(s)	333, 1077
BspCNI	CTCAG	1 cut(s)	1111
BspDI	ATCGAT	1 cut(s)	681
BspFNI	CGCG	2 cut(s)	200, 336
BspLI	GGNNCC	3 cut(s)	155, 242, 1143
BspPI	GGATC	4 cut(s)	277, 782, 816, 1057
BspQI	GCTCTTC	1 cut(s)	712
BspT107I	GGYRCC	1 cut(s)	1141
BsrDI	GCAATG	2 cut(s)	972, 984
BsrFI	RCCGGY	2 cut(s)	222, 329
BsrI	ACTGG	4 cut(s)	785, 853, 1009, 1060
BssAI	RCCGGY	2 cut(s)	222, 329
BssECI	CCNNGG	1 cut(s)	479
BssMI	GATC	6 cut(s)	255, 269, 439, 787, 808, 1049
BssSI	CACGAG	1 cut(s)	287
Bst2BI	CACGAG	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	472
Bst4CI	ACNGT	6 cut(s)	265, 384, 623, 860, 965, 1169
Bst6I	CTCTTC	2 cut(s)	425, 712
BstBAI	YACGTR	1 cut(s)	194
BstC8I	GCNNGC	3 cut(s)	249, 331, 927
BstDEI	CTNAG	3 cut(s)	873, 902, 1119
BstDSI	CCRYGG	1 cut(s)	479
BstF5I	GGATG	4 cut(s)	23, 222, 359, 833
BstFNI	CGCG	2 cut(s)	200, 336
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	3 cut(s)	200, 253, 338
BstKTI	GATC	6 cut(s)	258, 272, 442, 790, 811, 1052
BstMBI	GATC	6 cut(s)	255, 269, 439, 787, 808, 1049
BstMCI	CGRYCG	2 cut(s)	264, 334
BstMWI	GCNNNNNNNGC	3 cut(s)	335, 775, 1074
BstNI	CCWGG	1 cut(s)	472
BstSCI	CCNGG	1 cut(s)	470
BstSFI	CTRYAG	1 cut(s)	711
BstUI	CGCG	2 cut(s)	200, 336
BstV1I	GCAGC	2 cut(s)	890, 1102
BstV2I	GAAGAC	3 cut(s)	624, 664, 975
BstZI	CGGCCG	1 cut(s)	331
Bsu15I	ATCGAT	1 cut(s)	681
BsuRI	GGCC	2 cut(s)	333, 1077
BsuTUI	ATCGAT	1 cut(s)	681
BtgI	CCRYGG	1 cut(s)	479
BtgZI	GCGATG	2 cut(s)	215, 304
BtsCI	GGATG	4 cut(s)	23, 222, 359, 833
BtsI	GCAGTG	2 cut(s)	366, 1096
BtsIMutI	CAGTG	3 cut(s)	366, 778, 1096
Cac8I	GCNNGC	3 cut(s)	249, 331, 927
CaiI	CAGNNNCTG	3 cut(s)	253, 668, 963
CfoI	GCGC	3 cut(s)	200, 253, 338
Cfr10I	RCCGGY	2 cut(s)	222, 329
Cfr13I	GGNCC	1 cut(s)	129
ClaI	ATCGAT	1 cut(s)	681
Csp6I	GTAC	4 cut(s)	852, 866, 898, 1142
CviAII	CATG	2 cut(s)	426, 1069
CviQI	GTAC	4 cut(s)	852, 866, 898, 1142
DdeI	CTNAG	3 cut(s)	873, 902, 1119
DpnI	GATC	6 cut(s)	257, 271, 441, 789, 810, 1051
DpnII	GATC	6 cut(s)	255, 269, 439, 787, 808, 1049
DraI	TTTAAA	1 cut(s)	640
EaeI	YGGCCR	1 cut(s)	331
EagI	CGGCCG	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	425, 712
EarI	CTCTTC	2 cut(s)	425, 712
EclXI	CGGCCG	1 cut(s)	331
Eco32I	GATATC	1 cut(s)	607
Eco47I	GGWCC	1 cut(s)	129
Eco52I	CGGCCG	1 cut(s)	331
Eco72I	CACGTG	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	470
EcoRV	GATATC	1 cut(s)	607
FaeI	CATG	2 cut(s)	429, 1072
FalI	AAGNNNNNCTT	2 cut(s)	866, 898
FatI	CATG	2 cut(s)	425, 1068
FauNDI	CATATG	1 cut(s)	804
Fnu4HI	GCNGC	3 cut(s)	334, 879, 1116
FokI	GGATG	4 cut(s)	10, 229, 366, 840
Fsp4HI	GCNGC	3 cut(s)	334, 879, 1116
FspBI	CTAG	1 cut(s)	573
GlaI	GCGC	3 cut(s)	199, 252, 337
GluI	GCNGC	3 cut(s)	334, 879, 1116
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	2 cut(s)	333, 1077
HapII	CCGG	5 cut(s)	127, 223, 244, 330, 390
HhaI	GCGC	3 cut(s)	200, 253, 338
Hin1II	CATG	2 cut(s)	429, 1072
Hin6I	GCGC	3 cut(s)	198, 251, 336
HinP1I	GCGC	3 cut(s)	198, 251, 336
HincII	GTYRAC	2 cut(s)	75, 1165
HindII	GTYRAC	2 cut(s)	75, 1165
HpaII	CCGG	5 cut(s)	127, 223, 244, 330, 390
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	5 cut(s)	56, 75, 479, 846, 1165
Hpy188I	TCNGA	9 cut(s)	28, 158, 237, 269, 296, 343, 529, 537, 748
Hpy188III	TCNNGA	3 cut(s)	172, 259, 650
Hpy8I	GTNNAC	5 cut(s)	56, 75, 479, 846, 1165
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	133, 892
HpyCH4III	ACNGT	6 cut(s)	265, 384, 623, 860, 965, 1169
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	4 cut(s)	303, 743, 778, 977
HpyF10VI	GCNNNNNNNGC	3 cut(s)	335, 775, 1074
HpyF3I	CTNAG	3 cut(s)	873, 902, 1119
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	2 cut(s)	429, 1072
HspAI	GCGC	3 cut(s)	198, 251, 336
KpnI	GGTACC	1 cut(s)	1145
KroI	GCCGGC	1 cut(s)	329
KroNI	GCCGGC	1 cut(s)	331
Kzo9I	GATC	6 cut(s)	255, 269, 439, 787, 808, 1049
LguI	GCTCTTC	1 cut(s)	712
LmnI	GCTCC	1 cut(s)	1015
Lsp1109I	GCAGC	2 cut(s)	890, 1102
LweI	GCATC	4 cut(s)	312, 655, 752, 938
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	2 cut(s)	362, 1000
MalI	GATC	6 cut(s)	257, 271, 441, 789, 810, 1051
MboI	GATC	6 cut(s)	255, 269, 439, 787, 808, 1049
MboII	GAAGA	7 cut(s)	289, 442, 629, 664, 699, 877, 980
MhlI	GDGCHC	2 cut(s)	294, 1012
MluCI	AATT	7 cut(s)	97, 456, 542, 593, 599, 645, 716
MlyI	GAGTC	2 cut(s)	38, 370
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	8 cut(s)	118, 121, 198, 221, 231, 531, 780, 1067
MroNI	GCCGGC	1 cut(s)	329
MseI	TTAA	4 cut(s)	282, 591, 639, 1026
MslI	CAYNNNNRTG	1 cut(s)	977
MspI	CCGG	5 cut(s)	127, 223, 244, 330, 390
MspR9I	CCNGG	1 cut(s)	472
Mva1269I	GAATGC	1 cut(s)	1137
MvaI	CCWGG	1 cut(s)	472
MvnI	CGCG	2 cut(s)	200, 336
MwoI	GCNNNNNNNGC	3 cut(s)	335, 775, 1074
NaeI	GCCGGC	1 cut(s)	331
NdeI	CATATG	1 cut(s)	804
NdeII	GATC	6 cut(s)	255, 269, 439, 787, 808, 1049
NgoMIV	GCCGGC	1 cut(s)	329
NlaIII	CATG	2 cut(s)	429, 1072
NlaIV	GGNNCC	3 cut(s)	155, 242, 1143
NmuCI	GTSAC	2 cut(s)	362, 1000
PciSI	GCTCTTC	1 cut(s)	712
PctI	GAATGC	1 cut(s)	1137
PdiI	GCCGGC	1 cut(s)	331
PfeI	GAWTC	8 cut(s)	33, 159, 297, 488, 530, 906, 1059, 1110
PflFI	GACNNNGTC	1 cut(s)	70
PkrI	GCNGC	3 cut(s)	335, 880, 1117
PleI	GAGTC	2 cut(s)	38, 369
PmaCI	CACGTG	1 cut(s)	194
PmlI	CACGTG	1 cut(s)	194
PpsI	GAGTC	2 cut(s)	38, 369
Ppu21I	YACGTR	1 cut(s)	194
PsiI	TTATAA	1 cut(s)	947
Psp6I	CCWGG	1 cut(s)	470
PspCI	CACGTG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	470
PspN4I	GGNNCC	3 cut(s)	155, 242, 1143
PspPI	GGNCC	1 cut(s)	129
PstNI	CAGNNNCTG	3 cut(s)	253, 668, 963
PsyI	GACNNNGTC	1 cut(s)	70
RsaI	GTAC	4 cut(s)	853, 867, 899, 1143
RsaNI	GTAC	4 cut(s)	852, 866, 898, 1142
RseI	CAYNNNNRTG	1 cut(s)	977
SapI	GCTCTTC	1 cut(s)	712
SaqAI	TTAA	4 cut(s)	282, 591, 639, 1026
SatI	GCNGC	3 cut(s)	334, 879, 1116
Sau3AI	GATC	6 cut(s)	255, 269, 439, 787, 808, 1049
Sau96I	GGNCC	1 cut(s)	129
SchI	GAGTC	2 cut(s)	38, 370
ScrFI	CCNGG	1 cut(s)	472
SduI	GDGCHC	2 cut(s)	294, 1012
SetI	ASST	8 cut(s)	196, 242, 288, 476, 903, 1033, 1147, 1162
SfaNI	GCATC	4 cut(s)	312, 655, 752, 938
SfcI	CTRYAG	1 cut(s)	711
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	977
Sse9I	AATT	7 cut(s)	97, 456, 542, 593, 599, 645, 716
SsiI	CCGC	1 cut(s)	334
SspMI	CTAG	1 cut(s)	573
StyD4I	CCNGG	1 cut(s)	470
TaaI	ACNGT	6 cut(s)	265, 384, 623, 860, 965, 1169
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	5 cut(s)	162, 260, 491, 681, 726
TasI	AATT	7 cut(s)	97, 456, 542, 593, 599, 645, 716
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	8 cut(s)	33, 159, 297, 488, 530, 906, 1059, 1110
Tru1I	TTAA	4 cut(s)	282, 591, 639, 1026
Tru9I	TTAA	4 cut(s)	282, 591, 639, 1026
TscAI	CASTG	3 cut(s)	373, 785, 1103
TseFI	GTSAC	2 cut(s)	362, 1000
TseI	GCWGC	2 cut(s)	878, 1115
Tsp45I	GTSAC	2 cut(s)	362, 1000
TspDTI	ATGAA	3 cut(s)	233, 434, 933
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	3 cut(s)	373, 785, 1103
Tth111I	GACNNNGTC	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	129
XapI	RAATTY	5 cut(s)	97, 542, 599, 645, 716
XspI	CTAG	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.